NO28G01530, NO28G01530 (gene) Nannochloropsis oceanica

Overview
NameNO28G01530
Unique NameNO28G01530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4094
Alignment locationchr28:486778..490871 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:486778..490871 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO28G01530 vs. NCBI_GenBank
Match: XP_024580029.1 (WD40 repeat-containing protein [Plasmopara halstedii] >CEG43660.1 WD40 repeat-containing protein [Plasmopara halstedii])

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-7
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 0 
Query:  314 VATFGPQLRSFFSKHAAEVTKETLQNEALQIQTRELSAAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEVVVDLAR 407
            +  FGP+L+   SKH AEV   +LQ++ L+  +REL++ +VQ +L D  VL +A  FL+   E   T++ L  L     ++P T   VVDL +
Sbjct:  730 LVAFGPELKLGMSKHTAEVASRSLQDKTLRDNSRELASQIVQTVLNDHQVLTQASQFLQRLVEMESTREGLRMLVIQTLNNPMTRTHVVDLTK 822
The following BLAST results are available for this feature:
BLAST of NO28G01530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024580029.13.400e-737.63WD40 repeat-containing protein [Plasmopara halsted... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR101ngnoR101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01530.4NO28G01530.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01530.3NO28G01530.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01530.2NO28G01530.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01530.1NO28G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609497gene_9885Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01530.4NO28G01530.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01530.3NO28G01530.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01530.2NO28G01530.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01530.1NO28G01530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01530 ID=NO28G01530|Name=NO28G01530|organism=Nannochloropsis oceanica|type=gene|length=4094bp
CAATCCAGGCTCGCAAGAGATAACAAGGCCACAACCATGTATCACGGTGG
GCGGGCTTTTAAAAGGTAGGGATAAATGACAAGAGGTGGGAGGGAGGGCA
GTCAGGGCCGGGAGCTTGGGAGGCAGTGCTCGCCGGCAACATCACGCACC
ATTCTATACTCTTCCATTTGTGAGATGGCTGTGGCTTATGTGGGACTGTA
TCAAGAGAGCGAATACGCGCAAAAAGGGGCGGGCGGTGAGGGGCTTGGAA
TAACGCGGCAAGGGAAGGGCTTAATGGAGGGTACGCCAGGCACCAGCGGA
ACGACCACCTACACCTCTCTTGACGCACCCTTAACAATATACCCACCACA
CAGTCATTGGCATGGTTGCTTATGGCAGCAACTGCAGCAGAGTCTGCCGG
CCGCCACGGCCACAACCGGTGCTGCTGCTCGCGTTAGCGTCGCAGCCGCT
CCCTCCTCCCCTTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCCC
CCCGTCTCCTTTACAATCACATACGGCAGGAGCATCGCCATCGAGTGCAG
GCATGTCACATGTTCGACTTTCATCGGCGTCGTCGCAACAACAACCATTA
ATGCAGCAGATGGGTCACCACAGTCGCGAGAAACTCCACTTGACGAGAGC
CTTGTGTCCGCCTTCTGCTCTGGAAAGAATTAAAATGGTGATTGGAGGCA
GAGGAAGAGGGACAGGAGGAGAAATGGTGGGAGGACCAAAAGGAGGAGGA
AGAGGAGGTATGTCTGTGCGTATGCTACACATGACATTACCGGGAAGACG
AGCATTGGGAGCAGGGGGAAGAGGAGAGAGAGGAGGGACAGGGAGCAACA
GCAGCAGCAACAGCAGCAGCAGCAGTAGCAGCAGCAATAGCAGCAGCCAC
AGTAGTGGTGCTCGAAGAGCTAGCAGTCATAACGGTAGTGGTCCAAATCC
TTCTTCTCCTCCCCCTTCATCGATGCCGCCACCGCCTGGTGGTGGTGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGCCTGCTCCTGGTGCG
GCTGAGGCTGCTGCCGGTGAAGGGGGAGGGGCGCACGGCACTACAGGCGC
TGCTGGGGAGAAGGGGGTGGGAGGAAAAGCAACGAAGATCCTGCATCAAG
gtatgcgaaggggggggaggagagagggagggaggggagggaggagaatg
acagagggggacgtggtggtggagggaagggagggagagataagctctac
tctactctcctcactgaatgctcctctggttccaaattaaatcaaattaa
atggcttttgaacagGGAGCGTGATGTACGAGGACTTGGAGCGGGTCGTC
ATGAAGCAGgtacggagggagggagggagggagagggaaggagggaggga
aggagggaaggagggaggacaggcatagccatagattgtacgtcaaaaga
atgatttccacctgccgtcctaatcctccctccctccctccctcccttcc
tccctccctccctcgctccctccctcccgtcttcccttagATCCGAGCTA
CCAACCAAAACCGTTTCCGCATCGGTTTCGCCACTACCACGCTCGTAACG
GTCTGGGTGGTGGCTACCTTTGGCCCCCAACTCCGgtgggtcctctctcc
ctccctccctccttccttcccttcttccctcggctccctgtccccaaagt
acacggcagaggtcatcctagaaacgttctacctccctcctctccctccc
tctctccctccttccctctccctccctccctccctccgtacctgcttcat
gacgacccgctccaagtcctcgtacatcacgctccctgttcaaaagccaa
ttaatttaatttaatttggaaacagaggagcattcagtgaggagagtaga
gtagagcttacctctccctccctcccgccttccctccctctctcccgccc
tccctcccgccctccatcagCTCGTTCTTCTCCAAGCACGCGGCGGAGGT
GACCAAAGAAACCCTACAAAACGAGGCCCTTCAGATCCAAACCCGCGAGC
TCTCCGCCGCCGTCGTTCAGTACATCCTAACTGgtaggtaggtaggtggg
tcgataggtgtgtacgtatggatgtatgcatggaggtacgtgcgtgtgtg
tgtatgtgattgtgtgagctggctgctctgctgcttccctccgttcatct
tccctcctttcctcctccctttccttctctccccctctccccctctgcct
tccctcctttcctcctccctttccttctctccccctctccccctctgcct
tccctcctttccctcttttcctccctttggcctacgggagtcggagactc
tcactgttgaaaacatgtttgttaatatagctcaaattagaaaggcaagg
atgttaatatagctcagattaagaaggcaaggatattgatgtggctcaga
ttagaaagacaaggacgttaatatatctcggatttaaaatgcctggagat
aaaacccacgcacccgccccctccttccctccctacctagATCCCGACGT
CCTCTTCCGAGCTCAAAATTTTCTTCGGGAAGCGGCTGAGAATGTCGAGA
CTCAAAAGTCTCTTGTGGAGCTGGCGAGGCACGTGTTCTCCCATCCCTCC
ACCCTGGAGGTGGTGGTTGATCTGGCCAGGTAGGGAGGGAGGGAAAGAGG
GAGGGAGGGAGGAGACATGGGGTTGGCCCAGCCGGTCACGTGTTAAGGAG
GGAGGGAGGGAGGGAGAGAGGGAGTGTGGTGTTGTGGTGTCCTCTTGCCC
CGGGAGTGGTGAAGGGCCTGGACAGAAATAGAAGGAGGGAGTGAGGGAGG
GAGCGAGGAAGAGCACACTACGCCCTTCTTACATGGCCCTCTCTTTTCCT
CATCCGACAGGAGCCTCGTCCCTCGTGTTTTGCAATCCCAAGAAACCCTT
GATCAGGTGGGCGTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTCCCCT
AATCCCTCCCCCCCTTCCTCAAATACCTCAAGGTCGCCGCTCTCCTCGCC
AAAGTGATCGTCGAGCCGCCCGTTAAGGAAGCAGCCGTCGTCCTCCTCAC
CGAGCTGGTCAAAGACCCGGAGGTACGCCCTCCTTCCGTTCCCTCCCTCC
CTCCTTACCCCCTTTCCTTCTACCGGTGTCCTTCCGACATCGCCATCTTT
GTCCACCCCAGCAATCCCAGTGCACCATTGCCTTCTCGCGCTCATCTGGA
GAGGAGACAAAATAATCCTCTCTCCTCTCTTCCTTTCCCTCCTTTCCGTC
CCTCCATAGGTCTACACTGCCGTCGTTGAGCTCTCCACTCGCCTGGTGGT
TGATCCGCGGATCCAGGTTGCGGTAAATCAACTCTTACTCACCTCGTCTC
ATAAGGTACATTATTTCGCCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTACAGGGATAAGGCGGTAAGGGAGACGGAGCGAGTTCTCGCTC
TCTCTTATCTTGCCTCATTCACCTCCCCGTTCCCTCCTTCCTTCACTCCC
TCCCTTTCTCCCTCCCCAGGTACTGGAAGACCCGGAAGTCGTCGATCATT
CCAAGACATTCGTCGCCGAGGTGGTTGCCGATGACGCCTTACAACGGACA
GGTAGGCAGGGAAGGAGGGAGGGGGAATGGGAAGGAGGGAAGGCATGTTT
CATCATGGGCATCTATTTTCGCAAGAGGAAGGATGGAATTTTGCCGTGAA
CTTCTTGAAGAAATGCCACTCAGTCATTCCGCCCTTTCTCCCCCTCTCTC
TTCTGCAGGTGGCACGGCCATATGGAACTCGTTCCAATACTCCTTTCAAC
CGAAGCTCGTGCGTGTGTTGTGGTTTGGGCTTTTGTGCGGGGTAGTGGCT
TTCATGAGAAGCAATGGCAGAGACGACGCCGTGGGGGGAGGGGCGTTTGG
CTAGAGAGGGAAAGAGTGGACGAGTCTCAAACTCTTCATACGAAAGAAAA
GATATCTATCGGAGTGTAATTATTGGAATTTGAGTTTCTTTTTCAAAGGC
GATGCAGGGCGTCAAAGAAGAAAGAACGGAGGGTAATTTAAGTT
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protein sequence of NO28G01530.4

>NO28G01530.4-protein ID=NO28G01530.4-protein|Name=NO28G01530.4|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MTRGGREGSQGRELGRQCSPATSRTILYSSICEMAVAYVGLYQESEYAQK
GAGGEGLGITRQGKGLMEGTPGTSGTTTYTSLDAPLTIYPPHSHWHGCLW
QQLQQSLPAATATTGAAARVSVAAAPSSPSSSLSSSSSSSSPPSPLQSHT
AGASPSSAGMSHVRLSSASSQQQPLMQQMGHHSREKLHLTRALCPPSALE
RIKMVIGGRGRGTGGEMVGGPKGGGRGGMSVRMLHMTLPGRRALGAGGRG
ERGGTGSNSSSNSSSSSSSSNSSSHSSGARRASSHNGSGPNPSSPPPSSM
PPPPGGGGGGGGGGGGGGRRPAPGAAEAAAGEGGGAHGTTGAAGEKGVGG
KATKILHQGSVMYEDLERVVMKQIRATNQNRFRIGFATTTLVTVWVVATF
GPQLRSFFSKHAAEVTKETLQNEALQIQTRELSAAVVQYILTDPDVLFRA
QNFLREAAENVETQKSLVELARHVFSHPSTLEVVVDLAR*
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protein sequence of NO28G01530.3

>NO28G01530.3-protein ID=NO28G01530.3-protein|Name=NO28G01530.3|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MYHGGRAFKSHWHGCLWQQLQQSLPAATATTGAAARVSVAAAPSSPSSSL
SSSSSSSSPPSPLQSHTAGASPSSAGMSHVRLSSASSQQQPLMQQMGHHS
REKLHLTRALCPPSALERIKMVIGGRGRGTGGEMVGGPKGGGRGGMSVRM
LHMTLPGRRALGAGGRGERGGTGSNSSSNSSSSSSSSNSSSHSSGARRAS
SHNGSGPNPSSPPPSSMPPPPGGGGGGGGGGGGGGRRPAPGAAEAAAGEG
GGAHGTTGAAGEKGVGGKATKILHQGSVMYEDLERVVMKQIRATNQNRFR
IGFATTTLVTVWVVATFGPQLRSFFSKHAAEVTKETLQNEALQIQTRELS
AAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEV
VVDLAR*
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protein sequence of NO28G01530.2

>NO28G01530.2-protein ID=NO28G01530.2-protein|Name=NO28G01530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MYHGGRAFKSHWHGCLWQQLQQSLPAATATTGAAARVSVAAAPSSPSSSL
SSSSSSSSPPSPLQSHTAGASPSSAGMSHVRLSSASSQQQPLMQQMGHHS
REKLHLTRALCPPSALERIKMVIGGRGRGTGGEMVGGPKGGGRGGMSVRM
LHMTLPGRRALGAGGRGERGGTGSNSSSNSSSSSSSSNSSSHSSGARRAS
SHNGSGPNPSSPPPSSMPPPPGGGGGGGGGGGGGGRRPAPGAAEAAAGEG
GGAHGTTGAAGEKGVGGKATKILHQGSVMYEDLERVVMKQIRATNQNRFR
IGFATTTLVTVWVVATFGPQLRSFFSKHAAEVTKETLQNEALQIQTRELS
AAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEV
VVDLARSLVPRVLQSQETLDQVAALLAKVIVEPPVKEAAVVLLTELVKDP
EVRPPSVPSLPPYPLSFYRCPSDIAIFVHPSNPSAPLPSRAHLERRQNNP
LSSLPFPPFRPSIGLHCRR*
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protein sequence of NO28G01530.1

>NO28G01530.1-protein ID=NO28G01530.1-protein|Name=NO28G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MYHGGRAFKSHWHGCLWQQLQQSLPAATATTGAAARVSVAAAPSSPSSSL
SSSSSSSSPPSPLQSHTAGASPSSAGMSHVRLSSASSQQQPLMQQMGHHS
REKLHLTRALCPPSALERIKMVIGGRGRGTGGEMVGGPKGGGRGGMSVRM
LHMTLPGRRALGAGGRGERGGTGSNSSSNSSSSSSSSNSSSHSSGARRAS
SHNGSGPNPSSPPPSSMPPPPGGGGGGGGGGGGGGRRPAPGAAEAAAGEG
GGAHGTTGAAGEKGVGGKATKILHQGSVMYEDLERVVMKQIRATNQNRFR
IGFATTTLVTVWVVATFGPQLRSFFSKHAAEVTKETLQNEALQIQTRELS
AAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEV
VVDLARSLVPRVLQSQETLDQVAALLAKVIVEPPVKEAAVVLLTELVKDP
EVYTAVVELSTRLVVDPRIQVAVNQLLLTSSHKVLEDPEVVDHSKTFVAE
VVADDALQRTGGTAIWNSFQYSFQPKLVRVLWFGLLCGVVAFMRSNGRDD
AVGGGAFG*
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Synonyms
Publications