NO28G01530.1, NO28G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01530.1
Unique NameNO28G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1853
Alignment locationchr28:486778..490871 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:486778..490871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01530.1 vs.
Match: OQR85230.1 (hypothetical protein THRCLA_10731 [Thraustotheca clavata])

HSP 1 Score: 155.6 bits (392), Expect = 4.500e-34
Identity = 84/218 (38.53%), Postives = 128/218 (58.72%), Query Frame = 0 
Query:  317 FGPQLRSFFSKHAAEVTKETLQNEALQIQTRELSAAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEVVVDLARSLVPRVLQSQETLDQVAALLAKVIVEPPVKEAAVVLLTELVKDPEVYTAVVELSTRLVVDPRIQVAVNQLLLTSSHKVLEDPEVVDHSKTFVAEVVADDALQRTGGTAIWNSFQYSFQPKLVRVLWFG 535
            F P+L++  SK  AEV  ETLQNE LQIQT+EL++ +VQ +L DP VL +A  F++  +E+  TQ +LV L  +V ++P T+  V  L++ L+  +LQ   TL Q   LL   I +P  +E+ + LL +L++D      +  L +   V   ++ +V   L  S H V+ +P++ DH+K F+  VV D+ +Q   G AIWN+  Y F P+ V  LW G
Sbjct:   33 FAPELKNSMSKTTAEVASETLQNENLQIQTQELASQIVQTVLNDPKVLNQALQFIKNLSESEITQTALVNLTSNVLNNPQTMAQVTKLSKQLLLNLLQDPTTLRQFVNLLKNAIADPATRESVIALLEKLMQDENTKARLAHLMSHTFVQEPVKKSVTNTLTNSLHDVMSNPDIQDHAKVFIGGVVRDETVQTQSGEAIWNTMSYVFTPRWVSWLWQG 250
The following BLAST results are available for this feature:
BLAST of NO28G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR85230.14.500e-3438.53hypothetical protein THRCLA_10731 [Thraustotheca c... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01530NO28G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01530.1NO28G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01530.1.cds1NO28G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds2NO28G01530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds3NO28G01530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds4NO28G01530.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds5NO28G01530.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds6NO28G01530.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds7NO28G01530.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds8NO28G01530.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds9NO28G01530.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds10NO28G01530.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01530.1.cds11NO28G01530.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01530.1 ID=NO28G01530.1|Name=NO28G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp
CAATCCAGGCTCGCAAGAGATAACAAGGCCACAACCATGTATCACGGTGG
GCGGGCTTTTAAAAGTCATTGGCATGGTTGCTTATGGCAGCAACTGCAGC
AGAGTCTGCCGGCCGCCACGGCCACAACCGGTGCTGCTGCTCGCGTTAGC
GTCGCAGCCGCTCCCTCCTCCCCTTCCTCCTCCCTCTCCTCCTCCTCCTC
CTCCTCCTCCCCCCCGTCTCCTTTACAATCACATACGGCAGGAGCATCGC
CATCGAGTGCAGGCATGTCACATGTTCGACTTTCATCGGCGTCGTCGCAA
CAACAACCATTAATGCAGCAGATGGGTCACCACAGTCGCGAGAAACTCCA
CTTGACGAGAGCCTTGTGTCCGCCTTCTGCTCTGGAAAGAATTAAAATGG
TGATTGGAGGCAGAGGAAGAGGGACAGGAGGAGAAATGGTGGGAGGACCA
AAAGGAGGAGGAAGAGGAGGTATGTCTGTGCGTATGCTACACATGACATT
ACCGGGAAGACGAGCATTGGGAGCAGGGGGAAGAGGAGAGAGAGGAGGGA
CAGGGAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGTAGCAGCAGCAAT
AGCAGCAGCCACAGTAGTGGTGCTCGAAGAGCTAGCAGTCATAACGGTAG
TGGTCCAAATCCTTCTTCTCCTCCCCCTTCATCGATGCCGCCACCGCCTG
GTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGCCT
GCTCCTGGTGCGGCTGAGGCTGCTGCCGGTGAAGGGGGAGGGGCGCACGG
CACTACAGGCGCTGCTGGGGAGAAGGGGGTGGGAGGAAAAGCAACGAAGA
TCCTGCATCAAGGGAGCGTGATGTACGAGGACTTGGAGCGGGTCGTCATG
AAGCAGATCCGAGCTACCAACCAAAACCGTTTCCGCATCGGTTTCGCCAC
TACCACGCTCGTAACGGTCTGGGTGGTGGCTACCTTTGGCCCCCAACTCC
GCTCGTTCTTCTCCAAGCACGCGGCGGAGGTGACCAAAGAAACCCTACAA
AACGAGGCCCTTCAGATCCAAACCCGCGAGCTCTCCGCCGCCGTCGTTCA
GTACATCCTAACTGATCCCGACGTCCTCTTCCGAGCTCAAAATTTTCTTC
GGGAAGCGGCTGAGAATGTCGAGACTCAAAAGTCTCTTGTGGAGCTGGCG
AGGCACGTGTTCTCCCATCCCTCCACCCTGGAGGTGGTGGTTGATCTGGC
CAGGAGCCTCGTCCCTCGTGTTTTGCAATCCCAAGAAACCCTTGATCAGG
TCGCCGCTCTCCTCGCCAAAGTGATCGTCGAGCCGCCCGTTAAGGAAGCA
GCCGTCGTCCTCCTCACCGAGCTGGTCAAAGACCCGGAGGTCTACACTGC
CGTCGTTGAGCTCTCCACTCGCCTGGTGGTTGATCCGCGGATCCAGGTTG
CGGTAAATCAACTCTTACTCACCTCGTCTCATAAGGTACTGGAAGACCCG
GAAGTCGTCGATCATTCCAAGACATTCGTCGCCGAGGTGGTTGCCGATGA
CGCCTTACAACGGACAGGTGGCACGGCCATATGGAACTCGTTCCAATACT
CCTTTCAACCGAAGCTCGTGCGTGTGTTGTGGTTTGGGCTTTTGTGCGGG
GTAGTGGCTTTCATGAGAAGCAATGGCAGAGACGACGCCGTGGGGGGAGG
GGCGTTTGGCTAGAGAGGGAAAGAGTGGACGAGTCTCAAACTCTTCATAC
GAAAGAAAAGATATCTATCGGAGTGTAATTATTGGAATTTGAGTTTCTTT
TTCAAAGGCGATGCAGGGCGTCAAAGAAGAAAGAACGGAGGGTAATTTAA
GTT
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protein sequence of NO28G01530.1

>NO28G01530.1-protein ID=NO28G01530.1-protein|Name=NO28G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MYHGGRAFKSHWHGCLWQQLQQSLPAATATTGAAARVSVAAAPSSPSSSL
SSSSSSSSPPSPLQSHTAGASPSSAGMSHVRLSSASSQQQPLMQQMGHHS
REKLHLTRALCPPSALERIKMVIGGRGRGTGGEMVGGPKGGGRGGMSVRM
LHMTLPGRRALGAGGRGERGGTGSNSSSNSSSSSSSSNSSSHSSGARRAS
SHNGSGPNPSSPPPSSMPPPPGGGGGGGGGGGGGGRRPAPGAAEAAAGEG
GGAHGTTGAAGEKGVGGKATKILHQGSVMYEDLERVVMKQIRATNQNRFR
IGFATTTLVTVWVVATFGPQLRSFFSKHAAEVTKETLQNEALQIQTRELS
AAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEV
VVDLARSLVPRVLQSQETLDQVAALLAKVIVEPPVKEAAVVLLTELVKDP
EVYTAVVELSTRLVVDPRIQVAVNQLLLTSSHKVLEDPEVVDHSKTFVAE
VVADDALQRTGGTAIWNSFQYSFQPKLVRVLWFGLLCGVVAFMRSNGRDD
AVGGGAFG*
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mRNA from alignment at chr28:486778..490871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01530.1 ID=NO28G01530.1|Name=NO28G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=4094bp|location=Sequence derived from alignment at chr28:486778..490871- (Nannochloropsis oceanica)
CAATCCAGGCTCGCAAGAGATAACAAGGCCACAACCATGTATCACGGTGG
GCGGGCTTTTAAAAGGTAGGGATAAATGACAAGAGGTGGGAGGGAGGGCA
GTCAGGGCCGGGAGCTTGGGAGGCAGTGCTCGCCGGCAACATCACGCACC
ATTCTATACTCTTCCATTTGTGAGATGGCTGTGGCTTATGTGGGACTGTA
TCAAGAGAGCGAATACGCGCAAAAAGGGGCGGGCGGTGAGGGGCTTGGAA
TAACGCGGCAAGGGAAGGGCTTAATGGAGGGTACGCCAGGCACCAGCGGA
ACGACCACCTACACCTCTCTTGACGCACCCTTAACAATATACCCACCACA
CAGTCATTGGCATGGTTGCTTATGGCAGCAACTGCAGCAGAGTCTGCCGG
CCGCCACGGCCACAACCGGTGCTGCTGCTCGCGTTAGCGTCGCAGCCGCT
CCCTCCTCCCCTTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCCC
CCCGTCTCCTTTACAATCACATACGGCAGGAGCATCGCCATCGAGTGCAG
GCATGTCACATGTTCGACTTTCATCGGCGTCGTCGCAACAACAACCATTA
ATGCAGCAGATGGGTCACCACAGTCGCGAGAAACTCCACTTGACGAGAGC
CTTGTGTCCGCCTTCTGCTCTGGAAAGAATTAAAATGGTGATTGGAGGCA
GAGGAAGAGGGACAGGAGGAGAAATGGTGGGAGGACCAAAAGGAGGAGGA
AGAGGAGGTATGTCTGTGCGTATGCTACACATGACATTACCGGGAAGACG
AGCATTGGGAGCAGGGGGAAGAGGAGAGAGAGGAGGGACAGGGAGCAACA
GCAGCAGCAACAGCAGCAGCAGCAGTAGCAGCAGCAATAGCAGCAGCCAC
AGTAGTGGTGCTCGAAGAGCTAGCAGTCATAACGGTAGTGGTCCAAATCC
TTCTTCTCCTCCCCCTTCATCGATGCCGCCACCGCCTGGTGGTGGTGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGCCTGCTCCTGGTGCG
GCTGAGGCTGCTGCCGGTGAAGGGGGAGGGGCGCACGGCACTACAGGCGC
TGCTGGGGAGAAGGGGGTGGGAGGAAAAGCAACGAAGATCCTGCATCAAG
GTATGCGAAGGGGGGGGAGGAGAGAGGGAGGGAGGGGAGGGAGGAGAATG
ACAGAGGGGGACGTGGTGGTGGAGGGAAGGGAGGGAGAGATAAGCTCTAC
TCTACTCTCCTCACTGAATGCTCCTCTGGTTCCAAATTAAATCAAATTAA
ATGGCTTTTGAACAGGGAGCGTGATGTACGAGGACTTGGAGCGGGTCGTC
ATGAAGCAGGTACGGAGGGAGGGAGGGAGGGAGAGGGAAGGAGGGAGGGA
AGGAGGGAAGGAGGGAGGACAGGCATAGCCATAGATTGTACGTCAAAAGA
ATGATTTCCACCTGCCGTCCTAATCCTCCCTCCCTCCCTCCCTCCCTTCC
TCCCTCCCTCCCTCGCTCCCTCCCTCCCGTCTTCCCTTAGATCCGAGCTA
CCAACCAAAACCGTTTCCGCATCGGTTTCGCCACTACCACGCTCGTAACG
GTCTGGGTGGTGGCTACCTTTGGCCCCCAACTCCGGTGGGTCCTCTCTCC
CTCCCTCCCTCCTTCCTTCCCTTCTTCCCTCGGCTCCCTGTCCCCAAAGT
ACACGGCAGAGGTCATCCTAGAAACGTTCTACCTCCCTCCTCTCCCTCCC
TCTCTCCCTCCTTCCCTCTCCCTCCCTCCCTCCCTCCGTACCTGCTTCAT
GACGACCCGCTCCAAGTCCTCGTACATCACGCTCCCTGTTCAAAAGCCAA
TTAATTTAATTTAATTTGGAAACAGAGGAGCATTCAGTGAGGAGAGTAGA
GTAGAGCTTACCTCTCCCTCCCTCCCGCCTTCCCTCCCTCTCTCCCGCCC
TCCCTCCCGCCCTCCATCAGCTCGTTCTTCTCCAAGCACGCGGCGGAGGT
GACCAAAGAAACCCTACAAAACGAGGCCCTTCAGATCCAAACCCGCGAGC
TCTCCGCCGCCGTCGTTCAGTACATCCTAACTGGTAGGTAGGTAGGTGGG
TCGATAGGTGTGTACGTATGGATGTATGCATGGAGGTACGTGCGTGTGTG
TGTATGTGATTGTGTGAGCTGGCTGCTCTGCTGCTTCCCTCCGTTCATCT
TCCCTCCTTTCCTCCTCCCTTTCCTTCTCTCCCCCTCTCCCCCTCTGCCT
TCCCTCCTTTCCTCCTCCCTTTCCTTCTCTCCCCCTCTCCCCCTCTGCCT
TCCCTCCTTTCCCTCTTTTCCTCCCTTTGGCCTACGGGAGTCGGAGACTC
TCACTGTTGAAAACATGTTTGTTAATATAGCTCAAATTAGAAAGGCAAGG
ATGTTAATATAGCTCAGATTAAGAAGGCAAGGATATTGATGTGGCTCAGA
TTAGAAAGACAAGGACGTTAATATATCTCGGATTTAAAATGCCTGGAGAT
AAAACCCACGCACCCGCCCCCTCCTTCCCTCCCTACCTAGATCCCGACGT
CCTCTTCCGAGCTCAAAATTTTCTTCGGGAAGCGGCTGAGAATGTCGAGA
CTCAAAAGTCTCTTGTGGAGCTGGCGAGGCACGTGTTCTCCCATCCCTCC
ACCCTGGAGGTGGTGGTTGATCTGGCCAGGTAGGGAGGGAGGGAAAGAGG
GAGGGAGGGAGGAGACATGGGGTTGGCCCAGCCGGTCACGTGTTAAGGAG
GGAGGGAGGGAGGGAGAGAGGGAGTGTGGTGTTGTGGTGTCCTCTTGCCC
CGGGAGTGGTGAAGGGCCTGGACAGAAATAGAAGGAGGGAGTGAGGGAGG
GAGCGAGGAAGAGCACACTACGCCCTTCTTACATGGCCCTCTCTTTTCCT
CATCCGACAGGAGCCTCGTCCCTCGTGTTTTGCAATCCCAAGAAACCCTT
GATCAGGTGGGCGTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTCCCCT
AATCCCTCCCCCCCTTCCTCAAATACCTCAAGGTCGCCGCTCTCCTCGCC
AAAGTGATCGTCGAGCCGCCCGTTAAGGAAGCAGCCGTCGTCCTCCTCAC
CGAGCTGGTCAAAGACCCGGAGGTACGCCCTCCTTCCGTTCCCTCCCTCC
CTCCTTACCCCCTTTCCTTCTACCGGTGTCCTTCCGACATCGCCATCTTT
GTCCACCCCAGCAATCCCAGTGCACCATTGCCTTCTCGCGCTCATCTGGA
GAGGAGACAAAATAATCCTCTCTCCTCTCTTCCTTTCCCTCCTTTCCGTC
CCTCCATAGGTCTACACTGCCGTCGTTGAGCTCTCCACTCGCCTGGTGGT
TGATCCGCGGATCCAGGTTGCGGTAAATCAACTCTTACTCACCTCGTCTC
ATAAGGTACATTATTTCGCCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTACAGGGATAAGGCGGTAAGGGAGACGGAGCGAGTTCTCGCTC
TCTCTTATCTTGCCTCATTCACCTCCCCGTTCCCTCCTTCCTTCACTCCC
TCCCTTTCTCCCTCCCCAGGTACTGGAAGACCCGGAAGTCGTCGATCATT
CCAAGACATTCGTCGCCGAGGTGGTTGCCGATGACGCCTTACAACGGACA
GGTAGGCAGGGAAGGAGGGAGGGGGAATGGGAAGGAGGGAAGGCATGTTT
CATCATGGGCATCTATTTTCGCAAGAGGAAGGATGGAATTTTGCCGTGAA
CTTCTTGAAGAAATGCCACTCAGTCATTCCGCCCTTTCTCCCCCTCTCTC
TTCTGCAGGTGGCACGGCCATATGGAACTCGTTCCAATACTCCTTTCAAC
CGAAGCTCGTGCGTGTGTTGTGGTTTGGGCTTTTGTGCGGGGTAGTGGCT
TTCATGAGAAGCAATGGCAGAGACGACGCCGTGGGGGGAGGGGCGTTTGG
CTAGAGAGGGAAAGAGTGGACGAGTCTCAAACTCTTCATACGAAAGAAAA
GATATCTATCGGAGTGTAATTATTGGAATTTGAGTTTCTTTTTCAAAGGC
GATGCAGGGCGTCAAAGAAGAAAGAACGGAGGGTAATTTAAGTT
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Coding sequence (CDS) from alignment at chr28:486778..490871-

>NO28G01530.1 ID=NO28G01530.1|Name=NO28G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1677bp|location=Sequence derived from alignment at chr28:486778..490871- (Nannochloropsis oceanica)
ATGTATCACGGTGGGCGGGCTTTTAAAAGTCATTGGCATGGTTGCTTATG
GCAGCAACTGCAGCAGAGTCTGCCGGCCGCCACGGCCACAACCGGTGCTG
CTGCTCGCGTTAGCGTCGCAGCCGCTCCCTCCTCCCCTTCCTCCTCCCTC
TCCTCCTCCTCCTCCTCCTCCTCCCCCCCGTCTCCTTTACAATCACATAC
GGCAGGAGCATCGCCATCGAGTGCAGGCATGTCACATGTTCGACTTTCAT
CGGCGTCGTCGCAACAACAACCATTAATGCAGCAGATGGGTCACCACAGT
CGCGAGAAACTCCACTTGACGAGAGCCTTGTGTCCGCCTTCTGCTCTGGA
AAGAATTAAAATGGTGATTGGAGGCAGAGGAAGAGGGACAGGAGGAGAAA
TGGTGGGAGGACCAAAAGGAGGAGGAAGAGGAGGTATGTCTGTGCGTATG
CTACACATGACATTACCGGGAAGACGAGCATTGGGAGCAGGGGGAAGAGG
AGAGAGAGGAGGGACAGGGAGCAACAGCAGCAGCAACAGCAGCAGCAGCA
GTAGCAGCAGCAATAGCAGCAGCCACAGTAGTGGTGCTCGAAGAGCTAGC
AGTCATAACGGTAGTGGTCCAAATCCTTCTTCTCCTCCCCCTTCATCGAT
GCCGCCACCGCCTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGAGGAGGCCTGCTCCTGGTGCGGCTGAGGCTGCTGCCGGTGAAGGG
GGAGGGGCGCACGGCACTACAGGCGCTGCTGGGGAGAAGGGGGTGGGAGG
AAAAGCAACGAAGATCCTGCATCAAGGGAGCGTGATGTACGAGGACTTGG
AGCGGGTCGTCATGAAGCAGATCCGAGCTACCAACCAAAACCGTTTCCGC
ATCGGTTTCGCCACTACCACGCTCGTAACGGTCTGGGTGGTGGCTACCTT
TGGCCCCCAACTCCGCTCGTTCTTCTCCAAGCACGCGGCGGAGGTGACCA
AAGAAACCCTACAAAACGAGGCCCTTCAGATCCAAACCCGCGAGCTCTCC
GCCGCCGTCGTTCAGTACATCCTAACTGATCCCGACGTCCTCTTCCGAGC
TCAAAATTTTCTTCGGGAAGCGGCTGAGAATGTCGAGACTCAAAAGTCTC
TTGTGGAGCTGGCGAGGCACGTGTTCTCCCATCCCTCCACCCTGGAGGTG
GTGGTTGATCTGGCCAGGAGCCTCGTCCCTCGTGTTTTGCAATCCCAAGA
AACCCTTGATCAGGTCGCCGCTCTCCTCGCCAAAGTGATCGTCGAGCCGC
CCGTTAAGGAAGCAGCCGTCGTCCTCCTCACCGAGCTGGTCAAAGACCCG
GAGGTCTACACTGCCGTCGTTGAGCTCTCCACTCGCCTGGTGGTTGATCC
GCGGATCCAGGTTGCGGTAAATCAACTCTTACTCACCTCGTCTCATAAGG
TACTGGAAGACCCGGAAGTCGTCGATCATTCCAAGACATTCGTCGCCGAG
GTGGTTGCCGATGACGCCTTACAACGGACAGGTGGCACGGCCATATGGAA
CTCGTTCCAATACTCCTTTCAACCGAAGCTCGTGCGTGTGTTGTGGTTTG
GGCTTTTGTGCGGGGTAGTGGCTTTCATGAGAAGCAATGGCAGAGACGAC
GCCGTGGGGGGAGGGGCGTTTGGCTAG
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Synonyms
Publications