NO28G01530.2, NO28G01530.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G01530.2
Unique Name	NO28G01530.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2040
Alignment location	chr28:486778..490871 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:486778..490871 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO28G01530.2 vs.
Match: XP_008617107.1 (hypothetical protein SDRG_12804 [Saprolegnia diclina VS20]; EQC29555.1 hypothetical protein SDRG_12804 [Saprolegnia diclina VS20])

HSP 1 Score: 104.4 bits (259), Expect = 1.100e-18
Identity = 59/161 (36.65%), Postives = 96/161 (59.63%), Query Frame = 0

Query:  297 NRFRIGFATTTLVTVWV----VATFGPQLRSFFSKHAAEVTKETLQNEALQIQTRELSAAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEVVVDLARSLVPRVLQSQETLDQVAALLAKVIVEPPVKEAAVVLLTELVKDPEVR 454
            +R +  F    LVT+ +    +  F P+L++  SK  AEV  ETLQNE LQIQT+EL++ +VQ +L DP VL +A  F++  +E   TQK+LV L  +V ++P T+  V  L++ L+  ++Q   T+ Q   L+   I++P  +E+ + LL  L++D   +
Sbjct:   38 SRHKASFNKWGLVTIGLGGLCLVAFAPELKNSMSKTTAEVASETLQNEMLQIQTQELASQIVQTVLNDPKVLHQASQFIKNLSETETTQKALVVLTSNVLNNPQTMAQVTKLSKQLLLNLMQDPGTMRQFVNLIKNAIIDPATRESVISLLETLMQDERTK 198

The following BLAST results are available for this feature:

BLAST of NO28G01530.2 vs.

BLAST of NO28G01530.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_008617107.1	1.100e-18	36.65	hypothetical protein SDRG_12804 [Saprolegnia dicli...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G01530	NO28G01530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01530.2	NO28G01530.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01530.2.cds1	NO28G01530.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01530.2.cds2	NO28G01530.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01530.2.cds3	NO28G01530.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01530.2.cds4	NO28G01530.2.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01530.2.cds5	NO28G01530.2.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01530.2.cds6	NO28G01530.2.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01530.2.cds7	NO28G01530.2.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01530.2.cds8	NO28G01530.2.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:486778..490871-
coding sequence from alignment at chr28:486778..490871-

mRNA sequence

>NO28G01530.2 ID=NO28G01530.2|Name=NO28G01530.2|organism=Nannochloropsis oceanica|type=mRNA|length=2040bp
CAATCCAGGCTCGCAAGAGATAACAAGGCCACAACCATGTATCACGGTGG
GCGGGCTTTTAAAAGTCATTGGCATGGTTGCTTATGGCAGCAACTGCAGC
AGAGTCTGCCGGCCGCCACGGCCACAACCGGTGCTGCTGCTCGCGTTAGC
GTCGCAGCCGCTCCCTCCTCCCCTTCCTCCTCCCTCTCCTCCTCCTCCTC
CTCCTCCTCCCCCCCGTCTCCTTTACAATCACATACGGCAGGAGCATCGC
CATCGAGTGCAGGCATGTCACATGTTCGACTTTCATCGGCGTCGTCGCAA
CAACAACCATTAATGCAGCAGATGGGTCACCACAGTCGCGAGAAACTCCA
CTTGACGAGAGCCTTGTGTCCGCCTTCTGCTCTGGAAAGAATTAAAATGG
TGATTGGAGGCAGAGGAAGAGGGACAGGAGGAGAAATGGTGGGAGGACCA
AAAGGAGGAGGAAGAGGAGGTATGTCTGTGCGTATGCTACACATGACATT
ACCGGGAAGACGAGCATTGGGAGCAGGGGGAAGAGGAGAGAGAGGAGGGA
CAGGGAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGTAGCAGCAGCAAT
AGCAGCAGCCACAGTAGTGGTGCTCGAAGAGCTAGCAGTCATAACGGTAG
TGGTCCAAATCCTTCTTCTCCTCCCCCTTCATCGATGCCGCCACCGCCTG
GTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGCCT
GCTCCTGGTGCGGCTGAGGCTGCTGCCGGTGAAGGGGGAGGGGCGCACGG
CACTACAGGCGCTGCTGGGGAGAAGGGGGTGGGAGGAAAAGCAACGAAGA
TCCTGCATCAAGGGAGCGTGATGTACGAGGACTTGGAGCGGGTCGTCATG
AAGCAGATCCGAGCTACCAACCAAAACCGTTTCCGCATCGGTTTCGCCAC
TACCACGCTCGTAACGGTCTGGGTGGTGGCTACCTTTGGCCCCCAACTCC
GCTCGTTCTTCTCCAAGCACGCGGCGGAGGTGACCAAAGAAACCCTACAA
AACGAGGCCCTTCAGATCCAAACCCGCGAGCTCTCCGCCGCCGTCGTTCA
GTACATCCTAACTGATCCCGACGTCCTCTTCCGAGCTCAAAATTTTCTTC
GGGAAGCGGCTGAGAATGTCGAGACTCAAAAGTCTCTTGTGGAGCTGGCG
AGGCACGTGTTCTCCCATCCCTCCACCCTGGAGGTGGTGGTTGATCTGGC
CAGGAGCCTCGTCCCTCGTGTTTTGCAATCCCAAGAAACCCTTGATCAGG
TCGCCGCTCTCCTCGCCAAAGTGATCGTCGAGCCGCCCGTTAAGGAAGCA
GCCGTCGTCCTCCTCACCGAGCTGGTCAAAGACCCGGAGGTACGCCCTCC
TTCCGTTCCCTCCCTCCCTCCTTACCCCCTTTCCTTCTACCGGTGTCCTT
CCGACATCGCCATCTTTGTCCACCCCAGCAATCCCAGTGCACCATTGCCT
TCTCGCGCTCATCTGGAGAGGAGACAAAATAATCCTCTCTCCTCTCTTCC
TTTCCCTCCTTTCCGTCCCTCCATAGGTCTACACTGCCGTCGTTGAGCTC
TCCACTCGCCTGGTGGTTGATCCGCGGATCCAGGTTGCGGTAAATCAACT
CTTACTCACCTCGTCTCATAAGGTACTGGAAGACCCGGAAGTCGTCGATC
ATTCCAAGACATTCGTCGCCGAGGTGGTTGCCGATGACGCCTTACAACGG
ACAGGTGGCACGGCCATATGGAACTCGTTCCAATACTCCTTTCAACCGAA
GCTCGTGCGTGTGTTGTGGTTTGGGCTTTTGTGCGGGGTAGTGGCTTTCA
TGAGAAGCAATGGCAGAGACGACGCCGTGGGGGGAGGGGCGTTTGGCTAG
AGAGGGAAAGAGTGGACGAGTCTCAAACTCTTCATACGAAAGAAAAGATA
TCTATCGGAGTGTAATTATTGGAATTTGAGTTTCTTTTTCAAAGGCGATG
CAGGGCGTCAAAGAAGAAAGAACGGAGGGTAATTTAAGTT

protein sequence of NO28G01530.2

>NO28G01530.2-protein ID=NO28G01530.2-protein|Name=NO28G01530.2|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MYHGGRAFKSHWHGCLWQQLQQSLPAATATTGAAARVSVAAAPSSPSSSL
SSSSSSSSPPSPLQSHTAGASPSSAGMSHVRLSSASSQQQPLMQQMGHHS
REKLHLTRALCPPSALERIKMVIGGRGRGTGGEMVGGPKGGGRGGMSVRM
LHMTLPGRRALGAGGRGERGGTGSNSSSNSSSSSSSSNSSSHSSGARRAS
SHNGSGPNPSSPPPSSMPPPPGGGGGGGGGGGGGGRRPAPGAAEAAAGEG
GGAHGTTGAAGEKGVGGKATKILHQGSVMYEDLERVVMKQIRATNQNRFR
IGFATTTLVTVWVVATFGPQLRSFFSKHAAEVTKETLQNEALQIQTRELS
AAVVQYILTDPDVLFRAQNFLREAAENVETQKSLVELARHVFSHPSTLEV
VVDLARSLVPRVLQSQETLDQVAALLAKVIVEPPVKEAAVVLLTELVKDP
EVRPPSVPSLPPYPLSFYRCPSDIAIFVHPSNPSAPLPSRAHLERRQNNP
LSSLPFPPFRPSIGLHCRR*

mRNA from alignment at chr28:486778..490871-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G01530.2 ID=NO28G01530.2|Name=NO28G01530.2|organism=Nannochloropsis oceanica|type=mRNA|length=4094bp|location=Sequence derived from alignment at chr28:486778..490871- (Nannochloropsis oceanica)
CAATCCAGGCTCGCAAGAGATAACAAGGCCACAACCATGTATCACGGTGG
GCGGGCTTTTAAAAGGTAGGGATAAATGACAAGAGGTGGGAGGGAGGGCA
GTCAGGGCCGGGAGCTTGGGAGGCAGTGCTCGCCGGCAACATCACGCACC
ATTCTATACTCTTCCATTTGTGAGATGGCTGTGGCTTATGTGGGACTGTA
TCAAGAGAGCGAATACGCGCAAAAAGGGGCGGGCGGTGAGGGGCTTGGAA
TAACGCGGCAAGGGAAGGGCTTAATGGAGGGTACGCCAGGCACCAGCGGA
ACGACCACCTACACCTCTCTTGACGCACCCTTAACAATATACCCACCACA
CAGTCATTGGCATGGTTGCTTATGGCAGCAACTGCAGCAGAGTCTGCCGG
CCGCCACGGCCACAACCGGTGCTGCTGCTCGCGTTAGCGTCGCAGCCGCT
CCCTCCTCCCCTTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCCC
CCCGTCTCCTTTACAATCACATACGGCAGGAGCATCGCCATCGAGTGCAG
GCATGTCACATGTTCGACTTTCATCGGCGTCGTCGCAACAACAACCATTA
ATGCAGCAGATGGGTCACCACAGTCGCGAGAAACTCCACTTGACGAGAGC
CTTGTGTCCGCCTTCTGCTCTGGAAAGAATTAAAATGGTGATTGGAGGCA
GAGGAAGAGGGACAGGAGGAGAAATGGTGGGAGGACCAAAAGGAGGAGGA
AGAGGAGGTATGTCTGTGCGTATGCTACACATGACATTACCGGGAAGACG
AGCATTGGGAGCAGGGGGAAGAGGAGAGAGAGGAGGGACAGGGAGCAACA
GCAGCAGCAACAGCAGCAGCAGCAGTAGCAGCAGCAATAGCAGCAGCCAC
AGTAGTGGTGCTCGAAGAGCTAGCAGTCATAACGGTAGTGGTCCAAATCC
TTCTTCTCCTCCCCCTTCATCGATGCCGCCACCGCCTGGTGGTGGTGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGGAGGCCTGCTCCTGGTGCG
GCTGAGGCTGCTGCCGGTGAAGGGGGAGGGGCGCACGGCACTACAGGCGC
TGCTGGGGAGAAGGGGGTGGGAGGAAAAGCAACGAAGATCCTGCATCAAG
GTATGCGAAGGGGGGGGAGGAGAGAGGGAGGGAGGGGAGGGAGGAGAATG
ACAGAGGGGGACGTGGTGGTGGAGGGAAGGGAGGGAGAGATAAGCTCTAC
TCTACTCTCCTCACTGAATGCTCCTCTGGTTCCAAATTAAATCAAATTAA
ATGGCTTTTGAACAGGGAGCGTGATGTACGAGGACTTGGAGCGGGTCGTC
ATGAAGCAGGTACGGAGGGAGGGAGGGAGGGAGAGGGAAGGAGGGAGGGA
AGGAGGGAAGGAGGGAGGACAGGCATAGCCATAGATTGTACGTCAAAAGA
ATGATTTCCACCTGCCGTCCTAATCCTCCCTCCCTCCCTCCCTCCCTTCC
TCCCTCCCTCCCTCGCTCCCTCCCTCCCGTCTTCCCTTAGATCCGAGCTA
CCAACCAAAACCGTTTCCGCATCGGTTTCGCCACTACCACGCTCGTAACG
GTCTGGGTGGTGGCTACCTTTGGCCCCCAACTCCGGTGGGTCCTCTCTCC
CTCCCTCCCTCCTTCCTTCCCTTCTTCCCTCGGCTCCCTGTCCCCAAAGT
ACACGGCAGAGGTCATCCTAGAAACGTTCTACCTCCCTCCTCTCCCTCCC
TCTCTCCCTCCTTCCCTCTCCCTCCCTCCCTCCCTCCGTACCTGCTTCAT
GACGACCCGCTCCAAGTCCTCGTACATCACGCTCCCTGTTCAAAAGCCAA
TTAATTTAATTTAATTTGGAAACAGAGGAGCATTCAGTGAGGAGAGTAGA
GTAGAGCTTACCTCTCCCTCCCTCCCGCCTTCCCTCCCTCTCTCCCGCCC
TCCCTCCCGCCCTCCATCAGCTCGTTCTTCTCCAAGCACGCGGCGGAGGT
GACCAAAGAAACCCTACAAAACGAGGCCCTTCAGATCCAAACCCGCGAGC
TCTCCGCCGCCGTCGTTCAGTACATCCTAACTGGTAGGTAGGTAGGTGGG
TCGATAGGTGTGTACGTATGGATGTATGCATGGAGGTACGTGCGTGTGTG
TGTATGTGATTGTGTGAGCTGGCTGCTCTGCTGCTTCCCTCCGTTCATCT
TCCCTCCTTTCCTCCTCCCTTTCCTTCTCTCCCCCTCTCCCCCTCTGCCT
TCCCTCCTTTCCTCCTCCCTTTCCTTCTCTCCCCCTCTCCCCCTCTGCCT
TCCCTCCTTTCCCTCTTTTCCTCCCTTTGGCCTACGGGAGTCGGAGACTC
TCACTGTTGAAAACATGTTTGTTAATATAGCTCAAATTAGAAAGGCAAGG
ATGTTAATATAGCTCAGATTAAGAAGGCAAGGATATTGATGTGGCTCAGA
TTAGAAAGACAAGGACGTTAATATATCTCGGATTTAAAATGCCTGGAGAT
AAAACCCACGCACCCGCCCCCTCCTTCCCTCCCTACCTAGATCCCGACGT
CCTCTTCCGAGCTCAAAATTTTCTTCGGGAAGCGGCTGAGAATGTCGAGA
CTCAAAAGTCTCTTGTGGAGCTGGCGAGGCACGTGTTCTCCCATCCCTCC
ACCCTGGAGGTGGTGGTTGATCTGGCCAGGTAGGGAGGGAGGGAAAGAGG
GAGGGAGGGAGGAGACATGGGGTTGGCCCAGCCGGTCACGTGTTAAGGAG
GGAGGGAGGGAGGGAGAGAGGGAGTGTGGTGTTGTGGTGTCCTCTTGCCC
CGGGAGTGGTGAAGGGCCTGGACAGAAATAGAAGGAGGGAGTGAGGGAGG
GAGCGAGGAAGAGCACACTACGCCCTTCTTACATGGCCCTCTCTTTTCCT
CATCCGACAGGAGCCTCGTCCCTCGTGTTTTGCAATCCCAAGAAACCCTT
GATCAGGTGGGCGTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTCCCCT
AATCCCTCCCCCCCTTCCTCAAATACCTCAAGGTCGCCGCTCTCCTCGCC
AAAGTGATCGTCGAGCCGCCCGTTAAGGAAGCAGCCGTCGTCCTCCTCAC
CGAGCTGGTCAAAGACCCGGAGGTACGCCCTCCTTCCGTTCCCTCCCTCC
CTCCTTACCCCCTTTCCTTCTACCGGTGTCCTTCCGACATCGCCATCTTT
GTCCACCCCAGCAATCCCAGTGCACCATTGCCTTCTCGCGCTCATCTGGA
GAGGAGACAAAATAATCCTCTCTCCTCTCTTCCTTTCCCTCCTTTCCGTC
CCTCCATAGGTCTACACTGCCGTCGTTGAGCTCTCCACTCGCCTGGTGGT
TGATCCGCGGATCCAGGTTGCGGTAAATCAACTCTTACTCACCTCGTCTC
ATAAGGTACATTATTTCGCCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTACAGGGATAAGGCGGTAAGGGAGACGGAGCGAGTTCTCGCTC
TCTCTTATCTTGCCTCATTCACCTCCCCGTTCCCTCCTTCCTTCACTCCC
TCCCTTTCTCCCTCCCCAGGTACTGGAAGACCCGGAAGTCGTCGATCATT
CCAAGACATTCGTCGCCGAGGTGGTTGCCGATGACGCCTTACAACGGACA
GGTAGGCAGGGAAGGAGGGAGGGGGAATGGGAAGGAGGGAAGGCATGTTT
CATCATGGGCATCTATTTTCGCAAGAGGAAGGATGGAATTTTGCCGTGAA
CTTCTTGAAGAAATGCCACTCAGTCATTCCGCCCTTTCTCCCCCTCTCTC
TTCTGCAGGTGGCACGGCCATATGGAACTCGTTCCAATACTCCTTTCAAC
CGAAGCTCGTGCGTGTGTTGTGGTTTGGGCTTTTGTGCGGGGTAGTGGCT
TTCATGAGAAGCAATGGCAGAGACGACGCCGTGGGGGGAGGGGCGTTTGG
CTAGAGAGGGAAAGAGTGGACGAGTCTCAAACTCTTCATACGAAAGAAAA
GATATCTATCGGAGTGTAATTATTGGAATTTGAGTTTCTTTTTCAAAGGC
GATGCAGGGCGTCAAAGAAGAAAGAACGGAGGGTAATTTAAGTT

Coding sequence (CDS) from alignment at chr28:486778..490871-

>NO28G01530.2 ID=NO28G01530.2|Name=NO28G01530.2|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at chr28:486778..490871- (Nannochloropsis oceanica)
ATGTATCACGGTGGGCGGGCTTTTAAAAGTCATTGGCATGGTTGCTTATG
GCAGCAACTGCAGCAGAGTCTGCCGGCCGCCACGGCCACAACCGGTGCTG
CTGCTCGCGTTAGCGTCGCAGCCGCTCCCTCCTCCCCTTCCTCCTCCCTC
TCCTCCTCCTCCTCCTCCTCCTCCCCCCCGTCTCCTTTACAATCACATAC
GGCAGGAGCATCGCCATCGAGTGCAGGCATGTCACATGTTCGACTTTCAT
CGGCGTCGTCGCAACAACAACCATTAATGCAGCAGATGGGTCACCACAGT
CGCGAGAAACTCCACTTGACGAGAGCCTTGTGTCCGCCTTCTGCTCTGGA
AAGAATTAAAATGGTGATTGGAGGCAGAGGAAGAGGGACAGGAGGAGAAA
TGGTGGGAGGACCAAAAGGAGGAGGAAGAGGAGGTATGTCTGTGCGTATG
CTACACATGACATTACCGGGAAGACGAGCATTGGGAGCAGGGGGAAGAGG
AGAGAGAGGAGGGACAGGGAGCAACAGCAGCAGCAACAGCAGCAGCAGCA
GTAGCAGCAGCAATAGCAGCAGCCACAGTAGTGGTGCTCGAAGAGCTAGC
AGTCATAACGGTAGTGGTCCAAATCCTTCTTCTCCTCCCCCTTCATCGAT
GCCGCCACCGCCTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGGAGGAGGCCTGCTCCTGGTGCGGCTGAGGCTGCTGCCGGTGAAGGG
GGAGGGGCGCACGGCACTACAGGCGCTGCTGGGGAGAAGGGGGTGGGAGG
AAAAGCAACGAAGATCCTGCATCAAGGGAGCGTGATGTACGAGGACTTGG
AGCGGGTCGTCATGAAGCAGATCCGAGCTACCAACCAAAACCGTTTCCGC
ATCGGTTTCGCCACTACCACGCTCGTAACGGTCTGGGTGGTGGCTACCTT
TGGCCCCCAACTCCGCTCGTTCTTCTCCAAGCACGCGGCGGAGGTGACCA
AAGAAACCCTACAAAACGAGGCCCTTCAGATCCAAACCCGCGAGCTCTCC
GCCGCCGTCGTTCAGTACATCCTAACTGATCCCGACGTCCTCTTCCGAGC
TCAAAATTTTCTTCGGGAAGCGGCTGAGAATGTCGAGACTCAAAAGTCTC
TTGTGGAGCTGGCGAGGCACGTGTTCTCCCATCCCTCCACCCTGGAGGTG
GTGGTTGATCTGGCCAGGAGCCTCGTCCCTCGTGTTTTGCAATCCCAAGA
AACCCTTGATCAGGTCGCCGCTCTCCTCGCCAAAGTGATCGTCGAGCCGC
CCGTTAAGGAAGCAGCCGTCGTCCTCCTCACCGAGCTGGTCAAAGACCCG
GAGGTACGCCCTCCTTCCGTTCCCTCCCTCCCTCCTTACCCCCTTTCCTT
CTACCGGTGTCCTTCCGACATCGCCATCTTTGTCCACCCCAGCAATCCCA
GTGCACCATTGCCTTCTCGCGCTCATCTGGAGAGGAGACAAAATAATCCT
CTCTCCTCTCTTCCTTTCCCTCCTTTCCGTCCCTCCATAGGTCTACACTG
CCGTCGTTGA

Synonyms

Publications