NO28G01210, NO28G01210 (gene) Nannochloropsis oceanica

Overview
NameNO28G01210
Unique NameNO28G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2367
Alignment locationchr28:377188..379554 -

Link to JBrowse

Properties
Property NameValue
DescriptionCalycin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:377188..379554 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012674Calycin
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Homology
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BLAST of NO28G01210 vs. NCBI_GenBank
Match: EWM20874.1 (Calycin [Nannochloropsis gaditana])

HSP 1 Score: 275.4 bits (703), Expect = 1.900e-70
Identity = 169/268 (63.06%), Postives = 206/268 (76.87%), Query Frame = 0 
Query:    1 MEATATISLLLAHQSGLLNTAVDAIVPVYTLAVLCILVTVHRQRQDYGNSSSLPSSSSDEAYLVAFEKDLLRAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGKIEGPNFSGVWKSIPGKNSNYDEFLTVQGVPYLKRKIANSTVVTHTIQQDGDILKLEVQPLDMKTTFHIGGPPSTSYIGKTLFEDTMTYNDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVMKQCVKNLKDGKETHAEQTFEKAE 269
            M+A A I+LLL+HQSG LN AVD I+P+YT+ V+C+++T+HRQ   Y   +S   + +++AYLV FE++ L+AA+    XXXXXXXXXXXXXXXXXXXXX                        +  ++SGVWKS+P KN NY+EFL+VQGVPYLKRKIA STVVTH I+Q+GD L LEVQPLDMKTTF IGGPPSTSYIGK  F D MT ++EG+LVLVK NE+DGMEITA+RSL+EGGKVLVM+Q V+NLKDGKETHAEQTFEKA+
Sbjct:    1 MDAIAPIALLLSHQSGYLNHAVDTILPIYTMGVICLVLTLHRQ---YQPETSSAIAVAEDAYLVVFEREQLQAARFKEAXXXXXXXXXXXXXXXXXXXXXGGKGAVLPQGS-------------QSLDYSGVWKSVPSKNVNYEEFLSVQGVPYLKRKIATSTVVTHIIKQEGDTLHLEVQPLDMKTTFDIGGPPSTSYIGKKAFADRMTRDEEGSLVLVKTNEEDGMEITAVRSLKEGGKVLVMEQTVRNLKDGKETHAEQTFEKAD 252
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BLAST of NO28G01210 vs. NCBI_GenBank
Match: CBJ27927.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.5 bits (171), Expect = 9.100e-9
Identity = 49/148 (33.11%), Postives = 67/148 (45.27%), Query Frame = 0 
Query:  127 PNFSGVWKSIPGKNSNYDEFLTVQGVPYLKRKIANSTVVTHTIQQDGDILKLEVQP--LDMKTTFHIGGPPSTSYIGKTLFEDTMT------YNDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVMKQCVKNLKDGKETHAEQTFEK 267
            P F GVWK     +  Y+E L   GVP     +A      H I  DG   +L V+     +  TF IG  P    IGK  +E +M       +  E  L L     + G E+ AIRSL EGG  +V+ Q V+   +G E  A+  F++
Sbjct:  258 PAFYGVWKRT--SSEGYEELLLSSGVPKRAVAMAMKKHPVHIIDHDGSYFRLIVKNGLSKVDNTFFIGDEPKQDIIGKQSYEVSMNWAHLSGHGREDELALTSICHQAGEEVIAIRSLHEGGDQMVLTQIVRRPAEGYEVRAKHFFKR 403
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BLAST of NO28G01210 vs. NCBI_GenBank
Match: XP_002182714.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46001.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-7
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = 0 
Query:  128 NFSGVWKSIPGKNSNYDEFLTVQGVPYLKRKIANSTVVTHTIQQDGDILKLEVQP-LDMKTTFHIGGPPSTSYIGKTLFEDTMTY--NDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVMKQCVKNLKDGKETHAEQTFEKAE 269
            + +GV+K I   N N+D FL VQG+P+  R+ AN+    H I   G  L ++++  ++ +TT+ I GPP  + +   +F D +TY  ND G +V+ K    +  ++T  R L    + +VM        +       Q F++ E
Sbjct:  121 DLTGVYKLI--SNDNFDGFLEVQGIPWALRRAANAARPVHRITHRGSHLTIKIEGIIESQTTYIINGPPVETNVRGRIFRDQVTYLENDRG-IVVRKTAVTENYDVTVQRELSTDAQHIVMTSTAMFRDERVPVQCIQHFDRLE 261
[Close]
BLAST of NO28G01210 vs. NCBI_GenBank
Match: GAX19456.1 (hypothetical protein FisN_19Hh028 [Fistulifera solaris])

HSP 1 Score: 63.9 bits (154), Expect = 8.600e-7
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 0 
Query:  140 NSNYDEFLTVQGVPYLKRKIANSTVVTHTIQQDGDILKLEVQP-LDMKTTFHIGGPPSTSYIGKTLFEDTMTYNDEGALVLVKKNE-KDGMEITAIRSLEEGGKVLVM 246
            N  ++EFL VQGVP+  R+ AN+    H I Q    L +++Q  ++ +TT+ I GPP  + +   +FED + Y ++   + V+K    +  ++T  R L E  + +V+
Sbjct:  130 NQGFEEFLAVQGVPWALRRAANAARPIHRITQTAQQLTIQIQGIIESETTYIINGPPVETNVRGRIFEDVVEYMEDNRGIRVRKKALTEDYDVTVERVLSEDKQEIVL 237
The following BLAST results are available for this feature:
BLAST of NO28G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM20874.11.900e-7063.06Calycin [Nannochloropsis gaditana][more]
CBJ27927.19.100e-933.11expressed unknown protein [Ectocarpus siliculosus][more]
XP_002182714.11.000e-729.86predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX19456.18.600e-731.48hypothetical protein FisN_19Hh028 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004930NSK004930Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01210.2NO28G01210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01210.1NO28G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|314184gene_9850Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100700g3gene9544Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01210.2NO28G01210.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01210.1NO28G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01210 ID=NO28G01210|Name=NO28G01210|organism=Nannochloropsis oceanica|type=gene|length=2367bp
AACGTTAATCTTGATTAAGCGGGACCAATTACATCTCAAGAGAGAATTTG
AGCTAATTCCTCTAGGATGAGCCGTAGAAATAGAGTGACCTGATATTGTT
CAAGCGCATAAGAAGTGAGCCCCCTGCCCATGGGGGTGTGATGCTTTGCA
CGGCCTTGTGTCCACCTGCTTCGGCATGTGCGATATAATATGTAAAATAT
CGTAGAGAGTGCGCACTCAAATGATGCAAGCCAAGTCAAGACAAGGTCTC
AGACAACTCGAATCACTGTGTTCCTGAGCTTCCGCTCCTTTTCCCCCTCC
CACATTGATTTAGTTGAGTTGAGGCTTGAATGAACGTTTTCATATATACG
GCATGACGCCCCAGGGGTCGCCTGTCAGATTGGCTAAGTTCACCGTGCCC
CGTTGGCCCCGAGCTCTTTGCCAAGCCTCACGCTCTGTCTCATCAGCATG
AAGCCTATATCATGGAGAGTTTCGGAAAAAAATAATCAACAACACCTGGT
TGCCTGGAGGGTCGTTTTTTGTACAACACAAAGTGATACCATCGATAAAC
TTTGCCTTCCCGTTGACGCCCCCTCACCCACCCTAACCCTACGTCTCTGC
ACACACATCAACACAGCGCAAGCCAACAAAGGGCCTGACGCCGGTTACCA
CGTGTCGGCGGCTGCTTGTGTTCCGGAGACACTACCGACGCCCACCACCA
CCACCACCACCACTAGAATCAGCATCAGCATCACCGTCGTCGTCATCCCC
AGCGACCCCTACTTCTCCTCCTCCTGAATATATAAATACAAACCATGGAA
GCCACTGCCACCATCTCCCTTCTTTTGGCGCACCAATCCGGCCTTCTCAA
CACTGCCGTCGATGCCATCGTCCCAgtaagcctctccctctccccctccc
ttccctccctacctcccttctctcaccgctccctttcctcgttcctaact
ccatccttccacagGTGTATACTCTCGCCGTCCTCTGCATCCTCGTAACC
GTTCACCGACAACGCCAGGACTACGGTAACTCATCCTCCCTCCCATCATC
GTCCTCAGACGAAGCCTATCTCGTAGCATTCGAAAAAGACCTATTACGTG
CTGCCAAGGCCAAGGAAGTGCAACATAAACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGAGAACAGGAAAAACAGAATCGAAGAGCAGAGGC
CAAGAAGGGGGAGGAAGGCGGGACGGAGGAAACGAAGGAGGAAAGAGGGA
AGATCGAAGGACCTAACTTCAGTGGGGTATGGAAATCGATTCCAGGCAAG
AATTCCAATTACGACGAGTTTCTGACAGTCCAAGGGGTGCCTTATCTCAA
GCGGAAGATTGCAAACAGCACAGTGGTCACCCACACGATTCAACAGGATG
GGGATATATTGAAATTGGAGgtatgtatgcagactccttccttcccttcc
tccctccttccctcctttcctgcttccctcctttctgcctcctctctttt
caagcggaagagagcatgaataagtatgatgacaatgatgatgactatga
ttatgagtttctgacggcgtaaggggcacctcccatccctccctccctcc
ctccctcccttccaagGTGCAACCACTGGACATGAAGACCACGTTCCACA
TCGGTGGCCCCCCTAGgtatgtataaagatccctcccttcctccctcacc
tccctccctctctatttccctcgcttcatcgttcatattccttgtttttt
ctctatatgtctccttcctccatgctcctaatctctctctctctcctttc
ctcccttcctcagCACCTCCTACATCGGCAAGACTCTTTTCGAAGACACC
ATGACCTACAACGATGAAGGGGCTTTGGTTTTAGTTAAAAAAAACGAGAA
AGATGGGATGGAAATAACTGCTATCCGTTCCCTCGAAGAAGGAGGGAAGG
TGCTGGTGATGGTAAGTGGGAGGGGAGGAGGAAGAGAGGGAGGGAGGCAA
GGATATCGACAAGGACATCGACAAGATTGAGATACCCAGATTAATGCTCA
TACAATCATAAACGCACAATTCTTACATTATTACAATTATTGCTGTTATA
AAACCATTTAAATAGAAACAGTGCGTCAAGAATCTAAAGGACGGGAAGGA
GACACATGCGGAACAGACCTTCGAGAAGGCCGAATAAGAGAGGGACATCG
CACAGGTAGAAGCTGAAAGCAAGCGTCATTCAATATTGCTACTCCTTTGC
ATTGTCCCTTGATGGAAGGAGGGGGAGGGATGGAAGAAGGAGGAATGGGG
GGGGTTGTGCAGCAGGTCAAAGGGAATATAATGAAAAGAAATCTGAACAA
ACTTTATGCATGCGGTA
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protein sequence of NO28G01210.2

>NO28G01210.2-protein ID=NO28G01210.2-protein|Name=NO28G01210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MEATATISLLLAHQSGLLNTAVDAIVPVYTLAVLCILVTVHRQRQDYGNS
SSLPSSSSDEAYLVAFEKDLLRAAKAKEVQHKQQQQQQQQQQQQREQEKQ
NRRAEAKKGEEGGTEETKEERGKIEGPNFSGVWKSIPGKNSNYDEFLTVQ
GVPYLKRKIANSTVVTHTIQQDGDILKLEVQPLDMKTTFHIGGPPSTSYI
GKTLFEDTMTYNDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVMVSGRG
GGREGGRQGYRQGHRQD*
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protein sequence of NO28G01210.1

>NO28G01210.1-protein ID=NO28G01210.1-protein|Name=NO28G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MEATATISLLLAHQSGLLNTAVDAIVPVYTLAVLCILVTVHRQRQDYGNS
SSLPSSSSDEAYLVAFEKDLLRAAKAKEVQHKQQQQQQQQQQQQREQEKQ
NRRAEAKKGEEGGTEETKEERGKIEGPNFSGVWKSIPGKNSNYDEFLTVQ
GVPYLKRKIANSTVVTHTIQQDGDILKLEVQPLDMKTTFHIGGPPSTSYI
GKTLFEDTMTYNDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVMKQCVK
NLKDGKETHAEQTFEKAE*
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Synonyms
Publications