NO28G01210.1, NO28G01210.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G01210.1
Unique Name	NO28G01210.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1781
Alignment location	chr28:377188..379554 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:377188..379554 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO28G01210.1 vs.
Match: EWM20874.1 (Calycin [Nannochloropsis gaditana])

HSP 1 Score: 291.2 bits (744), Expect = 3.300e-75
Identity = 163/268 (60.82%), Postives = 208/268 (77.61%), Query Frame = 0

Query:    1 MEATATISLLLAHQSGLLNTAVDAIVPVYTLAVLCILVTVHRQRQDYGNSSSLPSSSSDEAYLVAFEKDLLRAAKAKEVQHKQQQQQQQQQQQQREQEKQNRRAEAKKGEEGGTEETKEERGKIEGPNFSGVWKSIPGKNSNYDEFLTVQGVPYLKRKIANSTVVTHTIQQDGDILKLEVQPLDMKTTFHIGGPPSTSYIGKTLFEDTMTYNDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVMKQCVKNLKDGKETHAEQTFEKAE 269
            M+A A I+LLL+HQSG LN AVD I+P+YT+ V+C+++T+HRQ   Y   +S   + +++AYLV FE++ L+AA+ KE QH+Q+QQ+       +E+E +N R     G+EGG      +    +  ++SGVWKS+P KN NY+EFL+VQGVPYLKRKIA STVVTH I+Q+GD L LEVQPLDMKTTF IGGPPSTSYIGK  F D MT ++EG+LVLVK NE+DGMEITA+RSL+EGGKVLVM+Q V+NLKDGKETHAEQTFEKA+
Sbjct:    1 MDAIAPIALLLSHQSGYLNHAVDTILPIYTMGVICLVLTLHRQ---YQPETSSAIAVAEDAYLVVFEREQLQAARFKEAQHRQEQQKA------KEKEGENGR-----GQEGGKGAVLPQGS--QSLDYSGVWKSVPSKNVNYEEFLSVQGVPYLKRKIATSTVVTHIIKQEGDTLHLEVQPLDMKTTFDIGGPPSTSYIGKKAFADRMTRDEEGSLVLVKTNEEDGMEITAVRSLKEGGKVLVMEQTVRNLKDGKETHAEQTFEKAD 252

The following BLAST results are available for this feature:

BLAST of NO28G01210.1 vs.

BLAST of NO28G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20874.1	3.300e-75	60.82	Calycin [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G01210	NO28G01210	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01210.1	NO28G01210.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01210.1.cds1	NO28G01210.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01210.1.cds2	NO28G01210.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01210.1.cds3	NO28G01210.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01210.1.cds4	NO28G01210.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01210.1.cds5	NO28G01210.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:377188..379554-
coding sequence from alignment at chr28:377188..379554-

mRNA sequence

>NO28G01210.1 ID=NO28G01210.1|Name=NO28G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp
AACGTTAATCTTGATTAAGCGGGACCAATTACATCTCAAGAGAGAATTTG
AGCTAATTCCTCTAGGATGAGCCGTAGAAATAGAGTGACCTGATATTGTT
CAAGCGCATAAGAAGTGAGCCCCCTGCCCATGGGGGTGTGATGCTTTGCA
CGGCCTTGTGTCCACCTGCTTCGGCATGTGCGATATAATATGTAAAATAT
CGTAGAGAGTGCGCACTCAAATGATGCAAGCCAAGTCAAGACAAGGTCTC
AGACAACTCGAATCACTGTGTTCCTGAGCTTCCGCTCCTTTTCCCCCTCC
CACATTGATTTAGTTGAGTTGAGGCTTGAATGAACGTTTTCATATATACG
GCATGACGCCCCAGGGGTCGCCTGTCAGATTGGCTAAGTTCACCGTGCCC
CGTTGGCCCCGAGCTCTTTGCCAAGCCTCACGCTCTGTCTCATCAGCATG
AAGCCTATATCATGGAGAGTTTCGGAAAAAAATAATCAACAACACCTGGT
TGCCTGGAGGGTCGTTTTTTGTACAACACAAAGTGATACCATCGATAAAC
TTTGCCTTCCCGTTGACGCCCCCTCACCCACCCTAACCCTACGTCTCTGC
ACACACATCAACACAGCGCAAGCCAACAAAGGGCCTGACGCCGGTTACCA
CGTGTCGGCGGCTGCTTGTGTTCCGGAGACACTACCGACGCCCACCACCA
CCACCACCACCACTAGAATCAGCATCAGCATCACCGTCGTCGTCATCCCC
AGCGACCCCTACTTCTCCTCCTCCTGAATATATAAATACAAACCATGGAA
GCCACTGCCACCATCTCCCTTCTTTTGGCGCACCAATCCGGCCTTCTCAA
CACTGCCGTCGATGCCATCGTCCCAGTGTATACTCTCGCCGTCCTCTGCA
TCCTCGTAACCGTTCACCGACAACGCCAGGACTACGGTAACTCATCCTCC
CTCCCATCATCGTCCTCAGACGAAGCCTATCTCGTAGCATTCGAAAAAGA
CCTATTACGTGCTGCCAAGGCCAAGGAAGTGCAACATAAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGAGAACAGGAAAAACAGAATCGA
AGAGCAGAGGCCAAGAAGGGGGAGGAAGGCGGGACGGAGGAAACGAAGGA
GGAAAGAGGGAAGATCGAAGGACCTAACTTCAGTGGGGTATGGAAATCGA
TTCCAGGCAAGAATTCCAATTACGACGAGTTTCTGACAGTCCAAGGGGTG
CCTTATCTCAAGCGGAAGATTGCAAACAGCACAGTGGTCACCCACACGAT
TCAACAGGATGGGGATATATTGAAATTGGAGGTGCAACCACTGGACATGA
AGACCACGTTCCACATCGGTGGCCCCCCTAGCACCTCCTACATCGGCAAG
ACTCTTTTCGAAGACACCATGACCTACAACGATGAAGGGGCTTTGGTTTT
AGTTAAAAAAAACGAGAAAGATGGGATGGAAATAACTGCTATCCGTTCCC
TCGAAGAAGGAGGGAAGGTGCTGGTGATGAAACAGTGCGTCAAGAATCTA
AAGGACGGGAAGGAGACACATGCGGAACAGACCTTCGAGAAGGCCGAATA
AGAGAGGGACATCGCACAGGTAGAAGCTGAAAGCAAGCGTCATTCAATAT
TGCTACTCCTTTGCATTGTCCCTTGATGGAAGGAGGGGGAGGGATGGAAG
AAGGAGGAATGGGGGGGGTTGTGCAGCAGGTCAAAGGGAATATAATGAAA
AGAAATCTGAACAAACTTTATGCATGCGGTA

protein sequence of NO28G01210.1

>NO28G01210.1-protein ID=NO28G01210.1-protein|Name=NO28G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MEATATISLLLAHQSGLLNTAVDAIVPVYTLAVLCILVTVHRQRQDYGNS
SSLPSSSSDEAYLVAFEKDLLRAAKAKEVQHKQQQQQQQQQQQQREQEKQ
NRRAEAKKGEEGGTEETKEERGKIEGPNFSGVWKSIPGKNSNYDEFLTVQ
GVPYLKRKIANSTVVTHTIQQDGDILKLEVQPLDMKTTFHIGGPPSTSYI
GKTLFEDTMTYNDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVMKQCVK
NLKDGKETHAEQTFEKAE*

mRNA from alignment at chr28:377188..379554-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G01210.1 ID=NO28G01210.1|Name=NO28G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp|location=Sequence derived from alignment at chr28:377188..379554- (Nannochloropsis oceanica)
AACGTTAATCTTGATTAAGCGGGACCAATTACATCTCAAGAGAGAATTTG
AGCTAATTCCTCTAGGATGAGCCGTAGAAATAGAGTGACCTGATATTGTT
CAAGCGCATAAGAAGTGAGCCCCCTGCCCATGGGGGTGTGATGCTTTGCA
CGGCCTTGTGTCCACCTGCTTCGGCATGTGCGATATAATATGTAAAATAT
CGTAGAGAGTGCGCACTCAAATGATGCAAGCCAAGTCAAGACAAGGTCTC
AGACAACTCGAATCACTGTGTTCCTGAGCTTCCGCTCCTTTTCCCCCTCC
CACATTGATTTAGTTGAGTTGAGGCTTGAATGAACGTTTTCATATATACG
GCATGACGCCCCAGGGGTCGCCTGTCAGATTGGCTAAGTTCACCGTGCCC
CGTTGGCCCCGAGCTCTTTGCCAAGCCTCACGCTCTGTCTCATCAGCATG
AAGCCTATATCATGGAGAGTTTCGGAAAAAAATAATCAACAACACCTGGT
TGCCTGGAGGGTCGTTTTTTGTACAACACAAAGTGATACCATCGATAAAC
TTTGCCTTCCCGTTGACGCCCCCTCACCCACCCTAACCCTACGTCTCTGC
ACACACATCAACACAGCGCAAGCCAACAAAGGGCCTGACGCCGGTTACCA
CGTGTCGGCGGCTGCTTGTGTTCCGGAGACACTACCGACGCCCACCACCA
CCACCACCACCACTAGAATCAGCATCAGCATCACCGTCGTCGTCATCCCC
AGCGACCCCTACTTCTCCTCCTCCTGAATATATAAATACAAACCATGGAA
GCCACTGCCACCATCTCCCTTCTTTTGGCGCACCAATCCGGCCTTCTCAA
CACTGCCGTCGATGCCATCGTCCCAGTAAGCCTCTCCCTCTCCCCCTCCC
TTCCCTCCCTACCTCCCTTCTCTCACCGCTCCCTTTCCTCGTTCCTAACT
CCATCCTTCCACAGGTGTATACTCTCGCCGTCCTCTGCATCCTCGTAACC
GTTCACCGACAACGCCAGGACTACGGTAACTCATCCTCCCTCCCATCATC
GTCCTCAGACGAAGCCTATCTCGTAGCATTCGAAAAAGACCTATTACGTG
CTGCCAAGGCCAAGGAAGTGCAACATAAACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGAGAACAGGAAAAACAGAATCGAAGAGCAGAGGC
CAAGAAGGGGGAGGAAGGCGGGACGGAGGAAACGAAGGAGGAAAGAGGGA
AGATCGAAGGACCTAACTTCAGTGGGGTATGGAAATCGATTCCAGGCAAG
AATTCCAATTACGACGAGTTTCTGACAGTCCAAGGGGTGCCTTATCTCAA
GCGGAAGATTGCAAACAGCACAGTGGTCACCCACACGATTCAACAGGATG
GGGATATATTGAAATTGGAGGTATGTATGCAGACTCCTTCCTTCCCTTCC
TCCCTCCTTCCCTCCTTTCCTGCTTCCCTCCTTTCTGCCTCCTCTCTTTT
CAAGCGGAAGAGAGCATGAATAAGTATGATGACAATGATGATGACTATGA
TTATGAGTTTCTGACGGCGTAAGGGGCACCTCCCATCCCTCCCTCCCTCC
CTCCCTCCCTTCCAAGGTGCAACCACTGGACATGAAGACCACGTTCCACA
TCGGTGGCCCCCCTAGGTATGTATAAAGATCCCTCCCTTCCTCCCTCACC
TCCCTCCCTCTCTATTTCCCTCGCTTCATCGTTCATATTCCTTGTTTTTT
CTCTATATGTCTCCTTCCTCCATGCTCCTAATCTCTCTCTCTCTCCTTTC
CTCCCTTCCTCAGCACCTCCTACATCGGCAAGACTCTTTTCGAAGACACC
ATGACCTACAACGATGAAGGGGCTTTGGTTTTAGTTAAAAAAAACGAGAA
AGATGGGATGGAAATAACTGCTATCCGTTCCCTCGAAGAAGGAGGGAAGG
TGCTGGTGATGGTAAGTGGGAGGGGAGGAGGAAGAGAGGGAGGGAGGCAA
GGATATCGACAAGGACATCGACAAGATTGAGATACCCAGATTAATGCTCA
TACAATCATAAACGCACAATTCTTACATTATTACAATTATTGCTGTTATA
AAACCATTTAAATAGAAACAGTGCGTCAAGAATCTAAAGGACGGGAAGGA
GACACATGCGGAACAGACCTTCGAGAAGGCCGAATAAGAGAGGGACATCG
CACAGGTAGAAGCTGAAAGCAAGCGTCATTCAATATTGCTACTCCTTTGC
ATTGTCCCTTGATGGAAGGAGGGGGAGGGATGGAAGAAGGAGGAATGGGG
GGGGTTGTGCAGCAGGTCAAAGGGAATATAATGAAAAGAAATCTGAACAA
ACTTTATGCATGCGGTA

Coding sequence (CDS) from alignment at chr28:377188..379554-

>NO28G01210.1 ID=NO28G01210.1|Name=NO28G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=807bp|location=Sequence derived from alignment at chr28:377188..379554- (Nannochloropsis oceanica)
ATGGAAGCCACTGCCACCATCTCCCTTCTTTTGGCGCACCAATCCGGCCT
TCTCAACACTGCCGTCGATGCCATCGTCCCAGTGTATACTCTCGCCGTCC
TCTGCATCCTCGTAACCGTTCACCGACAACGCCAGGACTACGGTAACTCA
TCCTCCCTCCCATCATCGTCCTCAGACGAAGCCTATCTCGTAGCATTCGA
AAAAGACCTATTACGTGCTGCCAAGGCCAAGGAAGTGCAACATAAACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGAACAGGAAAAACAG
AATCGAAGAGCAGAGGCCAAGAAGGGGGAGGAAGGCGGGACGGAGGAAAC
GAAGGAGGAAAGAGGGAAGATCGAAGGACCTAACTTCAGTGGGGTATGGA
AATCGATTCCAGGCAAGAATTCCAATTACGACGAGTTTCTGACAGTCCAA
GGGGTGCCTTATCTCAAGCGGAAGATTGCAAACAGCACAGTGGTCACCCA
CACGATTCAACAGGATGGGGATATATTGAAATTGGAGGTGCAACCACTGG
ACATGAAGACCACGTTCCACATCGGTGGCCCCCCTAGCACCTCCTACATC
GGCAAGACTCTTTTCGAAGACACCATGACCTACAACGATGAAGGGGCTTT
GGTTTTAGTTAAAAAAAACGAGAAAGATGGGATGGAAATAACTGCTATCC
GTTCCCTCGAAGAAGGAGGGAAGGTGCTGGTGATGAAACAGTGCGTCAAG
AATCTAAAGGACGGGAAGGAGACACATGCGGAACAGACCTTCGAGAAGGC
CGAATAA

Synonyms

Publications