NO28G01210.2, NO28G01210.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01210.2
Unique NameNO28G01210.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1935
Alignment locationchr28:377188..379554 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:377188..379554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01210.2 vs.
Match: EWM20874.1 (Calycin [Nannochloropsis gaditana])

HSP 1 Score: 253.1 bits (645), Expect = 9.900e-64
Identity = 144/245 (58.78%), Postives = 186/245 (75.92%), Query Frame = 0 
Query:    1 MEATATISLLLAHQSGLLNTAVDAIVPVYTLAVLCILVTVHRQRQDYGNSSSLPSSSSDEAYLVAFEKDLLRAAKAKEVQHKQQQQQQQQQQQQREQEKQNRRAEAKKGEEGGTEETKEERGKIEGPNFSGVWKSIPGKNSNYDEFLTVQGVPYLKRKIANSTVVTHTIQQDGDILKLEVQPLDMKTTFHIGGPPSTSYIGKTLFEDTMTYNDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVM 246
            M+A A I+LLL+HQSG LN AVD I+P+YT+ V+C+++T+HRQ   Y   +S   + +++AYLV FE++ L+AA+ KE QH+Q+QQ+       +E+E +N R     G+EGG      +    +  ++SGVWKS+P KN NY+EFL+VQGVPYLKRKIA STVVTH I+Q+GD L LEVQPLDMKTTF IGGPPSTSYIGK  F D MT ++EG+LVLVK NE+DGMEITA+RSL+EGGKVLVM
Sbjct:    1 MDAIAPIALLLSHQSGYLNHAVDTILPIYTMGVICLVLTLHRQ---YQPETSSAIAVAEDAYLVVFEREQLQAARFKEAQHRQEQQKA------KEKEGENGR-----GQEGGKGAVLPQGS--QSLDYSGVWKSVPSKNVNYEEFLSVQGVPYLKRKIATSTVVTHIIKQEGDTLHLEVQPLDMKTTFDIGGPPSTSYIGKKAFADRMTRDEEGSLVLVKTNEEDGMEITAVRSLKEGGKVLVM 229
The following BLAST results are available for this feature:
BLAST of NO28G01210.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20874.19.900e-6458.78Calycin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01210NO28G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01210.2NO28G01210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01210.2.cds1NO28G01210.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01210.2.cds2NO28G01210.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01210.2.cds3NO28G01210.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01210.2.cds4NO28G01210.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01210.2 ID=NO28G01210.2|Name=NO28G01210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp
AACGTTAATCTTGATTAAGCGGGACCAATTACATCTCAAGAGAGAATTTG
AGCTAATTCCTCTAGGATGAGCCGTAGAAATAGAGTGACCTGATATTGTT
CAAGCGCATAAGAAGTGAGCCCCCTGCCCATGGGGGTGTGATGCTTTGCA
CGGCCTTGTGTCCACCTGCTTCGGCATGTGCGATATAATATGTAAAATAT
CGTAGAGAGTGCGCACTCAAATGATGCAAGCCAAGTCAAGACAAGGTCTC
AGACAACTCGAATCACTGTGTTCCTGAGCTTCCGCTCCTTTTCCCCCTCC
CACATTGATTTAGTTGAGTTGAGGCTTGAATGAACGTTTTCATATATACG
GCATGACGCCCCAGGGGTCGCCTGTCAGATTGGCTAAGTTCACCGTGCCC
CGTTGGCCCCGAGCTCTTTGCCAAGCCTCACGCTCTGTCTCATCAGCATG
AAGCCTATATCATGGAGAGTTTCGGAAAAAAATAATCAACAACACCTGGT
TGCCTGGAGGGTCGTTTTTTGTACAACACAAAGTGATACCATCGATAAAC
TTTGCCTTCCCGTTGACGCCCCCTCACCCACCCTAACCCTACGTCTCTGC
ACACACATCAACACAGCGCAAGCCAACAAAGGGCCTGACGCCGGTTACCA
CGTGTCGGCGGCTGCTTGTGTTCCGGAGACACTACCGACGCCCACCACCA
CCACCACCACCACTAGAATCAGCATCAGCATCACCGTCGTCGTCATCCCC
AGCGACCCCTACTTCTCCTCCTCCTGAATATATAAATACAAACCATGGAA
GCCACTGCCACCATCTCCCTTCTTTTGGCGCACCAATCCGGCCTTCTCAA
CACTGCCGTCGATGCCATCGTCCCAGTGTATACTCTCGCCGTCCTCTGCA
TCCTCGTAACCGTTCACCGACAACGCCAGGACTACGGTAACTCATCCTCC
CTCCCATCATCGTCCTCAGACGAAGCCTATCTCGTAGCATTCGAAAAAGA
CCTATTACGTGCTGCCAAGGCCAAGGAAGTGCAACATAAACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGAGAACAGGAAAAACAGAATCGA
AGAGCAGAGGCCAAGAAGGGGGAGGAAGGCGGGACGGAGGAAACGAAGGA
GGAAAGAGGGAAGATCGAAGGACCTAACTTCAGTGGGGTATGGAAATCGA
TTCCAGGCAAGAATTCCAATTACGACGAGTTTCTGACAGTCCAAGGGGTG
CCTTATCTCAAGCGGAAGATTGCAAACAGCACAGTGGTCACCCACACGAT
TCAACAGGATGGGGATATATTGAAATTGGAGGTGCAACCACTGGACATGA
AGACCACGTTCCACATCGGTGGCCCCCCTAGCACCTCCTACATCGGCAAG
ACTCTTTTCGAAGACACCATGACCTACAACGATGAAGGGGCTTTGGTTTT
AGTTAAAAAAAACGAGAAAGATGGGATGGAAATAACTGCTATCCGTTCCC
TCGAAGAAGGAGGGAAGGTGCTGGTGATGGTAAGTGGGAGGGGAGGAGGA
AGAGAGGGAGGGAGGCAAGGATATCGACAAGGACATCGACAAGATTGAGA
TACCCAGATTAATGCTCATACAATCATAAACGCACAATTCTTACATTATT
ACAATTATTGCTGTTATAAAACCATTTAAATAGAAACAGTGCGTCAAGAA
TCTAAAGGACGGGAAGGAGACACATGCGGAACAGACCTTCGAGAAGGCCG
AATAAGAGAGGGACATCGCACAGGTAGAAGCTGAAAGCAAGCGTCATTCA
ATATTGCTACTCCTTTGCATTGTCCCTTGATGGAAGGAGGGGGAGGGATG
GAAGAAGGAGGAATGGGGGGGGTTGTGCAGCAGGTCAAAGGGAATATAAT
GAAAAGAAATCTGAACAAACTTTATGCATGCGGTA
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protein sequence of NO28G01210.2

>NO28G01210.2-protein ID=NO28G01210.2-protein|Name=NO28G01210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MEATATISLLLAHQSGLLNTAVDAIVPVYTLAVLCILVTVHRQRQDYGNS
SSLPSSSSDEAYLVAFEKDLLRAAKAKEVQHKQQQQQQQQQQQQREQEKQ
NRRAEAKKGEEGGTEETKEERGKIEGPNFSGVWKSIPGKNSNYDEFLTVQ
GVPYLKRKIANSTVVTHTIQQDGDILKLEVQPLDMKTTFHIGGPPSTSYI
GKTLFEDTMTYNDEGALVLVKKNEKDGMEITAIRSLEEGGKVLVMVSGRG
GGREGGRQGYRQGHRQD*
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mRNA from alignment at chr28:377188..379554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01210.2 ID=NO28G01210.2|Name=NO28G01210.2|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp|location=Sequence derived from alignment at chr28:377188..379554- (Nannochloropsis oceanica)
AACGTTAATCTTGATTAAGCGGGACCAATTACATCTCAAGAGAGAATTTG
AGCTAATTCCTCTAGGATGAGCCGTAGAAATAGAGTGACCTGATATTGTT
CAAGCGCATAAGAAGTGAGCCCCCTGCCCATGGGGGTGTGATGCTTTGCA
CGGCCTTGTGTCCACCTGCTTCGGCATGTGCGATATAATATGTAAAATAT
CGTAGAGAGTGCGCACTCAAATGATGCAAGCCAAGTCAAGACAAGGTCTC
AGACAACTCGAATCACTGTGTTCCTGAGCTTCCGCTCCTTTTCCCCCTCC
CACATTGATTTAGTTGAGTTGAGGCTTGAATGAACGTTTTCATATATACG
GCATGACGCCCCAGGGGTCGCCTGTCAGATTGGCTAAGTTCACCGTGCCC
CGTTGGCCCCGAGCTCTTTGCCAAGCCTCACGCTCTGTCTCATCAGCATG
AAGCCTATATCATGGAGAGTTTCGGAAAAAAATAATCAACAACACCTGGT
TGCCTGGAGGGTCGTTTTTTGTACAACACAAAGTGATACCATCGATAAAC
TTTGCCTTCCCGTTGACGCCCCCTCACCCACCCTAACCCTACGTCTCTGC
ACACACATCAACACAGCGCAAGCCAACAAAGGGCCTGACGCCGGTTACCA
CGTGTCGGCGGCTGCTTGTGTTCCGGAGACACTACCGACGCCCACCACCA
CCACCACCACCACTAGAATCAGCATCAGCATCACCGTCGTCGTCATCCCC
AGCGACCCCTACTTCTCCTCCTCCTGAATATATAAATACAAACCATGGAA
GCCACTGCCACCATCTCCCTTCTTTTGGCGCACCAATCCGGCCTTCTCAA
CACTGCCGTCGATGCCATCGTCCCAGTAAGCCTCTCCCTCTCCCCCTCCC
TTCCCTCCCTACCTCCCTTCTCTCACCGCTCCCTTTCCTCGTTCCTAACT
CCATCCTTCCACAGGTGTATACTCTCGCCGTCCTCTGCATCCTCGTAACC
GTTCACCGACAACGCCAGGACTACGGTAACTCATCCTCCCTCCCATCATC
GTCCTCAGACGAAGCCTATCTCGTAGCATTCGAAAAAGACCTATTACGTG
CTGCCAAGGCCAAGGAAGTGCAACATAAACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCGAGAACAGGAAAAACAGAATCGAAGAGCAGAGGC
CAAGAAGGGGGAGGAAGGCGGGACGGAGGAAACGAAGGAGGAAAGAGGGA
AGATCGAAGGACCTAACTTCAGTGGGGTATGGAAATCGATTCCAGGCAAG
AATTCCAATTACGACGAGTTTCTGACAGTCCAAGGGGTGCCTTATCTCAA
GCGGAAGATTGCAAACAGCACAGTGGTCACCCACACGATTCAACAGGATG
GGGATATATTGAAATTGGAGGTATGTATGCAGACTCCTTCCTTCCCTTCC
TCCCTCCTTCCCTCCTTTCCTGCTTCCCTCCTTTCTGCCTCCTCTCTTTT
CAAGCGGAAGAGAGCATGAATAAGTATGATGACAATGATGATGACTATGA
TTATGAGTTTCTGACGGCGTAAGGGGCACCTCCCATCCCTCCCTCCCTCC
CTCCCTCCCTTCCAAGGTGCAACCACTGGACATGAAGACCACGTTCCACA
TCGGTGGCCCCCCTAGGTATGTATAAAGATCCCTCCCTTCCTCCCTCACC
TCCCTCCCTCTCTATTTCCCTCGCTTCATCGTTCATATTCCTTGTTTTTT
CTCTATATGTCTCCTTCCTCCATGCTCCTAATCTCTCTCTCTCTCCTTTC
CTCCCTTCCTCAGCACCTCCTACATCGGCAAGACTCTTTTCGAAGACACC
ATGACCTACAACGATGAAGGGGCTTTGGTTTTAGTTAAAAAAAACGAGAA
AGATGGGATGGAAATAACTGCTATCCGTTCCCTCGAAGAAGGAGGGAAGG
TGCTGGTGATGGTAAGTGGGAGGGGAGGAGGAAGAGAGGGAGGGAGGCAA
GGATATCGACAAGGACATCGACAAGATTGAGATACCCAGATTAATGCTCA
TACAATCATAAACGCACAATTCTTACATTATTACAATTATTGCTGTTATA
AAACCATTTAAATAGAAACAGTGCGTCAAGAATCTAAAGGACGGGAAGGA
GACACATGCGGAACAGACCTTCGAGAAGGCCGAATAAGAGAGGGACATCG
CACAGGTAGAAGCTGAAAGCAAGCGTCATTCAATATTGCTACTCCTTTGC
ATTGTCCCTTGATGGAAGGAGGGGGAGGGATGGAAGAAGGAGGAATGGGG
GGGGTTGTGCAGCAGGTCAAAGGGAATATAATGAAAAGAAATCTGAACAA
ACTTTATGCATGCGGTA
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Coding sequence (CDS) from alignment at chr28:377188..379554-

>NO28G01210.2 ID=NO28G01210.2|Name=NO28G01210.2|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr28:377188..379554- (Nannochloropsis oceanica)
ATGGAAGCCACTGCCACCATCTCCCTTCTTTTGGCGCACCAATCCGGCCT
TCTCAACACTGCCGTCGATGCCATCGTCCCAGTGTATACTCTCGCCGTCC
TCTGCATCCTCGTAACCGTTCACCGACAACGCCAGGACTACGGTAACTCA
TCCTCCCTCCCATCATCGTCCTCAGACGAAGCCTATCTCGTAGCATTCGA
AAAAGACCTATTACGTGCTGCCAAGGCCAAGGAAGTGCAACATAAACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGAACAGGAAAAACAG
AATCGAAGAGCAGAGGCCAAGAAGGGGGAGGAAGGCGGGACGGAGGAAAC
GAAGGAGGAAAGAGGGAAGATCGAAGGACCTAACTTCAGTGGGGTATGGA
AATCGATTCCAGGCAAGAATTCCAATTACGACGAGTTTCTGACAGTCCAA
GGGGTGCCTTATCTCAAGCGGAAGATTGCAAACAGCACAGTGGTCACCCA
CACGATTCAACAGGATGGGGATATATTGAAATTGGAGGTGCAACCACTGG
ACATGAAGACCACGTTCCACATCGGTGGCCCCCCTAGCACCTCCTACATC
GGCAAGACTCTTTTCGAAGACACCATGACCTACAACGATGAAGGGGCTTT
GGTTTTAGTTAAAAAAAACGAGAAAGATGGGATGGAAATAACTGCTATCC
GTTCCCTCGAAGAAGGAGGGAAGGTGCTGGTGATGGTAAGTGGGAGGGGA
GGAGGAAGAGAGGGAGGGAGGCAAGGATATCGACAAGGACATCGACAAGA
TTGA
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Synonyms
Publications