NO28G00930, NO28G00930 (gene) Nannochloropsis oceanica

Overview
NameNO28G00930
Unique NameNO28G00930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2044
Alignment locationchr28:303733..305776 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein L7A/L8
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:303733..305776 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR001921Ribosomal_L7A/L8
Vocabulary: Biological Process
TermDefinition
GO:0008150biological_process
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of NO28G00930 vs. NCBI_GenBank
Match: EWM20906.1 (Ribosomal protein L7A/L8 [Nannochloropsis gaditana])

HSP 1 Score: 430.3 bits (1105), Expect = 4.300e-117
Identity = 226/255 (88.63%), Postives = 235/255 (92.16%), Query Frame = 0
Query:    1 MAPKKVTKKPAKKAAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            MAPKKV              LF AEPRSFR+GGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFS AL+KNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGE  AP+KQTV+K+GLKHVTELIEAKKVKFVAIAHDVNPIELVVW+PALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKA+FEKMC +FK +FNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF
Sbjct:    1 MAPKKVAXXXXXXXXXXXXXLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: CBN74803.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 299.3 bits (765), Expect = 1.200e-77
Identity = 160/253 (63.24%), Postives = 192/253 (75.89%), Query Frame = 0
Query:    4 KKVTKKPAKKAAPK-ANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            KK  KK  K    K A+PLF A  +SFR+G  I+PK  DLSRFVKWPRY+R+QRQRKIL QRLKVPP+INQFS A++KNQATEL K+L KY+PE K  K++RLK++AAAK +G E A      V+KFGLKHVT LIE +K   V IAHDV PIELVVWLPALCRK GIPY I+KGKARLG LVH+KNAAV+ L    KED++    +  +F  QFN+   R WGGG+MGLKTQ++LE RQ+A+EAELAKKA +
Sbjct:    5 KKQVKKQVKSTPKKVADPLFPARKKSFRIGRDIQPK-VDLSRFVKWPRYIRLQRQRKILVQRLKVPPSINQFSKAIDKNQATELLKVLMKYQPEDKKAKQQRLKEIAAAKEAGKEPAPSKAPKVIKFGLKHVTTLIEEQKASLVVIAHDVTPIELVVWLPALCRKMGIPYCIMKGKARLGTLVHQKNAAVICLTTVNKEDESKLSNLKSNFTAQFNEGFVRKWGGGVMGLKTQRKLEKRQKAIEAELAKKAQY 256          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: XP_002906545.1 (60S ribosomal protein L7a-2 [Phytophthora infestans T30-4] >EEY65946.1 60S ribosomal protein L7a-2 [Phytophthora infestans T30-4])

HSP 1 Score: 298.5 bits (763), Expect = 2.000e-77
Identity = 162/244 (66.39%), Postives = 192/244 (78.69%), Query Frame = 0
Query:   14 AAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDKK--ERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            AA K +PLFVA P++FR GG I+PK RDLSRFV+WPRYVR+QRQRK+LYQRLKVPP+INQFSN +EKN AT+LFKLL KY+PE+K  K +RL+ +AA K    EA+AP    VVKFGL HVT LIE KK K V IAHDV+PIELVV+LPALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   F+ +FND     R WGGGIMGLKTQK+LE+R++ + AE AKKA +
Sbjct:   26 AASKKDPLFVATPKNFRKGGDIQPK-RDLSRFVRWPRYVRLQRQRKVLYQRLKVPPSINQFSNTVEKNVATDLFKLLLKYQPETKAAKTQRLRNIAAGKE---EASAP--PAVVKFGLNHVTSLIENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLTQVFRTKFNDDSVARRKWGGGIMGLKTQKKLELREKVIAAEAAKKAQY 263          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: XP_008909489.1 (hypothetical protein PPTG_14734 [Phytophthora parasitica INRA-310] >ETI40671.1 hypothetical protein F443_14031 [Phytophthora parasitica P1569] >ETK80770.1 hypothetical protein L915_13675 [Phytophthora parasitica] >ETL34185.1 hypothetical protein L916_13574 [Phytophthora parasitica] >ETL87427.1 hypothetical protein L917_13382 [Phytophthora parasitica] >ETM40666.1 hypothetical protein L914_13469 [Phytophthora parasitica] >ETN05019.1 hypothetical protein PPTG_14734 [Phytophthora parasitica INRA-310] >ETO69358.1 hypothetical protein F444_14063 [Phytophthora parasitica P1976] >ETP10428.1 hypothetical protein F441_13959 [Phytophthora parasitica CJ01A1] >ETP38603.1 hypothetical protein F442_13872 [Phytophthora parasitica P10297] >KUF95419.1 Malic enzyme [Phytophthora nicotianae] >KUG02207.1 60S ribosomal protein L7a-2 [Phytophthora nicotianae])

HSP 1 Score: 297.7 bits (761), Expect = 3.400e-77
Identity = 161/244 (65.98%), Postives = 194/244 (79.51%), Query Frame = 0
Query:   14 AAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFND--KKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            AA K +PLFV+ P++FR GG I+PK RDLSRFV+WPRYVR+QRQRK+LYQRLKVPP+INQFSN +EKN AT+LFKLL KY+PE+K  K +RL+ +AA K    EA+AP    VVKFGL HVT LIE KK K V IAHDV+PIELVV+LPALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   F+ +FN+  +  R WGGGIMGLKTQK+LE+R++A+ AE AKKA +
Sbjct:   26 AASKKDPLFVSAPKNFRKGGDIQPK-RDLSRFVRWPRYVRLQRQRKVLYQRLKVPPSINQFSNTVEKNVATDLFKLLLKYQPETKAAKTQRLRNIAAGKE---EASAP--PAVVKFGLNHVTSLIENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLTQVFRTKFNEDVQARRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 263          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: POM75983.1 (60S ribosomal protein L7a-2 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 295.4 bits (755), Expect = 1.700e-76
Identity = 162/244 (66.39%), Postives = 191/244 (78.28%), Query Frame = 0
Query:   14 AAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDKK--ERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            AA K +PLFV+ P++FR GG I+PK RDLSRFV+WPRYVR+QRQRK+LYQRLKVPP+INQFSN LEKN AT+LFKLL KY+PE+K  K  RL+ +AA K    EA+AP    VVKFGL HVT LIE KK K V IAHDV+PIELVV+LPALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   F  +FN+     R WGGGIMGLKTQK+LE+R++A+ AE AKKA +
Sbjct:   25 AASKKDPLFVSAPKNFRKGGDIQPK-RDLSRFVRWPRYVRLQRQRKVLYQRLKVPPSINQFSNTLEKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKE---EASAP--PAVVKFGLNHVTSLIENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLTQTFHAKFNEDSTIRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 262          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: XP_009034150.1 (hypothetical protein AURANDRAFT_5527, partial [Aureococcus anophagefferens] >EGB11038.1 hypothetical protein AURANDRAFT_5527, partial [Aureococcus anophagefferens])

HSP 1 Score: 292.7 bits (748), Expect = 1.100e-75
Identity = 158/251 (62.95%), Postives = 190/251 (75.70%), Query Frame = 0
Query:    4 KKVTKKPAKKAAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDK--KERTWGGGIMGLKTQKRLEIRQRAVEAELAKK 253
            K+V K P KK A K +PLF A PR+FRVGG I+P  RDLSRFVKWPRYVR+QRQ+KIL QRLKVPPA+NQF+  L+KNQA ELFKLL KY+PE K  K +R+K LA AKA+GG A      TVVKFGLKHVT L+E KK K V IA DV+PIELVVWLPALC+K  +PY IVK K+RLG +VH+K AAV  L   +KED+ S +++  +FK  +ND     R WGGGIMGLKTQ +L  R++A++AELAKK
Sbjct:    5 KEVKKAPPKKEAAKPDPLFQATPRNFRVGGDIQPT-RDLSRFVKWPRYVRLQRQKKILQQRLKVPPALNQFATTLDKNQAAELFKLLMKYQPEDKAAKADRVKALAEAKAAGGAAPEGKAPTVVKFGLKHVTYLVENKKAKLVCIASDVDPIELVVWLPALCKKMDVPYCIVKNKSRLGTVVHQKTAAVCCLTTVKKEDQHSLDQLRSNFKAMYNDNVAHARKWGGGIMGLKTQAKLAKREKALQAELAKK 254          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: OWZ22172.1 (60S ribosomal protein L7a-2 [Phytophthora megakarya])

HSP 1 Score: 291.6 bits (745), Expect = 2.400e-75
Identity = 159/243 (65.43%), Postives = 190/243 (78.19%), Query Frame = 0
Query:   15 APKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDKK--ERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            A K +PLFV+ P++FR GG I+PK RDLSRFV+WPRYVR+QRQRK+LYQRLKVPP+INQFSN ++KN AT+LFKLL KY+PE+K  K  RL+ +AA K    EA+AP    VVKFGL HVT LIE KK K V IAHDV+PIELVV+LPALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   F  +FN+     R WGGGIMGLKTQK+LE+R++A+ AE AKKA +
Sbjct:   26 ASKKDPLFVSAPKNFRKGGDIQPK-RDLSRFVRWPRYVRLQRQRKVLYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKE---EASAP--PAVVKFGLNHVTSLIENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLTETFHAKFNEDNVARRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 262          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: XP_024586658.1 (ribosomal protein rpl7a [Plasmopara halstedii] >CEG50289.1 ribosomal protein rpl7a [Plasmopara halstedii])

HSP 1 Score: 290.4 bits (742), Expect = 5.400e-75
Identity = 158/239 (66.11%), Postives = 186/239 (77.82%), Query Frame = 0
Query:   19 NPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDKK--ERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            NPLF + P++FR G  I+PK RDLSRFV+WPRYVR+QRQRKILYQRLKVPP+INQFSN ++KN AT+LFKLL KY+PE+K  K  RL+ +AA K    EA AP    VVKFGL HVT LIE KK K V IAHDVNPIELVV+LPALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   F+ +FN+     R WGGGIMGLKTQK+LE+R++A+ AE AKKA +
Sbjct:   32 NPLFASTPKNFRKGNDIQPK-RDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTVDKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKQ---EATAP--PAVVKFGLNHVTSLIENKKAKLVVIAHDVNPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSQVFRAKFNEDSATRRKWGGGIMGLKTQKKLELREKAIAAEAAKKAQY 264          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: XP_009515589.1 (hypothetical protein PHYSODRAFT_370958, partial [Phytophthora sojae] >EGZ28314.1 hypothetical protein PHYSODRAFT_370958, partial [Phytophthora sojae])

HSP 1 Score: 290.0 bits (741), Expect = 7.000e-75
Identity = 160/237 (67.51%), Postives = 185/237 (78.06%), Query Frame = 0
Query:   11 AKKAAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDK--KERTWGGGIMGLKTQKRLEIRQRAV 246
            A   A K NPLFV+ P++FR GG I+PK RDLSRFV+WPRYVR+QRQRKILYQRLKVPP+INQFSN LEKN AT+LFKLL KY+PE+K  K  RL+ +AA K    EA+AP    VVKFGL HVT LIE KK K V IAHDV+PIELVV+LPALCR+  IPY IVKGKARLG LVH+KNAAVVAL    KEDKA F+ +   FK +FND     R WGGGIMGLKTQK+LE+R++A+
Sbjct:    2 AASTASKKNPLFVSTPKNFRKGGDIQPK-RDLSRFVRWPRYVRLQRQRKILYQRLKVPPSINQFSNTLEKNVATDLFKLLLKYQPETKAAKTLRLRNIAAGKE---EASAP--PAVVKFGLNHVTSLIENKKAKLVVIAHDVDPIELVVFLPALCRQFDIPYCIVKGKARLGQLVHQKNAAVVALTHVNKEDKAKFDSLSEAFKAKFNDDAVSRRKWGGGIMGLKTQKKLELREKAI 232          
BLAST of NO28G00930 vs. NCBI_GenBank
Match: OQR96157.1 (60S ribosomal protein L7a-2 [Achlya hypogyna])

HSP 1 Score: 285.8 bits (730), Expect = 1.300e-73
Identity = 164/262 (62.60%), Postives = 197/262 (75.19%), Query Frame = 0
Query:    2 APKKVTKKPAKKA---APK---ANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDK--KERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            A  K   KPA KA   APK   A+PLF + P++FR+GG I+PK RDLSRFV+WP+ VR+QRQ KIL  RLKVPP+INQFSN L+KN AT+L+KLL KY+PE+K  K +RL+ +AA K    + +AP    ++K+GL HVT LIE KK K V IAHDV PIELVV+LPALCRK  IPY IVKGKARLG LVHKKNAAVVAL +  KEDKA F+ +   F+ QFND+    R WGGGIMGLKTQK+LE+R +AV AELAKKA +
Sbjct:   10 ANTKPAAKPAAKAGSTAPKKKTADPLFPSAPKNFRLGGDIQPK-RDLSRFVRWPKNVRLQRQHKILTTRLKVPPSINQFSNTLDKNTATDLYKLLLKYQPETKAAKTQRLRDIAAGKE---QVSAP--PALIKYGLNHVTSLIENKKAKMVCIAHDVTPIELVVFLPALCRKMDIPYCIVKGKARLGQLVHKKNAAVVALTQVNKEDKAKFDSLNTAFRAQFNDETSHRRKWGGGIMGLKTQKKLELRAKAVAAELAKKAQY 265          
The following BLAST results are available for this feature:
BLAST of NO28G00930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20906.14.300e-11788.63Ribosomal protein L7A/L8 [Nannochloropsis gaditana... [more]
CBN74803.11.200e-7763.24conserved unknown protein [Ectocarpus siliculosus][more]
XP_002906545.12.000e-7766.3960S ribosomal protein L7a-2 [Phytophthora infestan... [more]
XP_008909489.13.400e-7765.98hypothetical protein PPTG_14734 [Phytophthora para... [more]
POM75983.11.700e-7666.3960S ribosomal protein L7a-2 [Phytophthora palmivor... [more]
XP_009034150.11.100e-7562.95hypothetical protein AURANDRAFT_5527, partial [Aur... [more]
OWZ22172.12.400e-7565.4360S ribosomal protein L7a-2 [Phytophthora megakary... [more]
XP_024586658.15.400e-7566.11ribosomal protein rpl7a [Plasmopara halstedii] >CE... [more]
XP_009515589.17.000e-7567.51hypothetical protein PHYSODRAFT_370958, partial [P... [more]
OQR96157.11.300e-7362.6060S ribosomal protein L7a-2 [Achlya hypogyna][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004896NSK004896Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00930.1NO28G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606841gene_9197Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100156g9gene9513Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00930.1NO28G00930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00930 ID=NO28G00930|Name=NO28G00930|organism=Nannochloropsis oceanica|type=gene|length=2044bp
CGAGAGGCTCTGCTCGCATGAGCCCTGTGTTTGACGGGCTTCTGTCATGC
GATACCCGTGTGTGGGTTGTCTTGGATCATTGTTCGTGGGACAGGTCGAC
TGCAACTTCTTGGCGGATGCCGTGGGAGCGACGGATGGTTGAGAAGCTCC
AACCGCTGCTTCGTCTAGTGCCTTGACGATCAGCCAGCTTTCCTTCTCCC
GTCTGCCTCACACTCACGAGTCCTTCGTTTTTCCCTCCCGCTTCCCTTGT
AACCCCAGACAGGAGAGCGGAAGCTTTTTTGGTGTGTTTAACCAGAGGAC
CTAGAACACAATGgtacgttggtagctgtgagaggttgggtgggtttgcg
ggcgacgcggaagagttgggaagaagaaagctggtgcgacgcagtggggc
tgtagtcatgtaatgcgcagcgtaaatgtgcctaatctctgcgcgcattg
tcagcattactgtcctcataggggccactgtcgttaaggctgggtgactg
ctgggagggttcggcatcatcaaagaatggaaggggggagggaggacagg
acaggacatatcaaccaacaacatttgtgcgcttgctttcgtgataattc
tcactcacttcattatatatttttgtccgcacagGCTCCCAAGAAGGTGA
CGAAAAAGCCTGCCAAGAAGGCGGCACCCAAGGCCAACCCGCTCTTCGTG
GCGGAGCCCCGCAGCTTCCGCGTCGGTGGCGCTATCCGGgtgcgtaatct
tgtgacagggagaataccagagggagtggacaaagggcttaggatcgtca
cgtctattttattgaagatagttgttgctccagtctcggtgtgttagtag
ttgtgtgtgtgcgtacttccatgccgagttcctgcgcattccttgctctg
atctgatctgtcaggtgttgtgatgtggtgttcgtgcccgtttttctcct
tttcccccgaagcttttatctgcctagtgacaaacacatctgccacacat
ctgccggtcccaataactgccactcacgctcttattccctccctttcttc
ctcactcctccctcctatccacagCCTAAGGGCCGCGACCTCTCGCGCTT
CGTCAAGTGGCCCCGCTACGTCCGCATCCAGCGGCAGCGCAAAATCTTGT
ACCAACGTCTGAAGGTGCCCCCTGCCATCAACCAGTTCTCCAATGCTCTG
GAGAAGAACCAGGCCACGGAGCTGTTCAAACTGCTGGCCAAGTACCGCCC
CGAGAGCAAGGTAGAGAAGCGCGAACGGCTCAAGCAGCTGGCGGCGGCCA
AGGCAAGTGGAGGAGAGGCAGCGGCGCCGAGCAAGCAGACCGTGGTGAAG
TTTGGCTTGAAGCACGTAACGGAGCTGATTGAGGCCAAGAAGGTGAAGTT
CGTGGCCATTGCCCACGACGTGAACCCGATCGAGTTAGTGGTGTGGCTCC
CCGCGCTGTGCCGCAAGCAGGGGATCCCCTATGCCATTGTCAAGGGGAAG
GCGCGTTTGGGCGCGCTGGTACACAAGAAGAATGCGGCGGTCGTGGCGCT
AGAGGAGGCGAGGAAGGAGGACAAAGCAAGCTTTGAGAAGATGTGCGGGG
ATTTCAAGAACCAGTTCAATGACAAGAAGGAGCGAACATGGGGTGGAGGA
ATCATGGGCCTCAAGACCCAGAAGCGGTTGGAGATCCGCCAACGTGCGGT
GGAGGCCGAGCTGGCCAAGAAGGCTGCTTTCTAATTTGCTCGTACACCTA
GATCCATGAATTGACTCAGTCCGTCACGTTCCAGAAAGGTTTTTGCTTGC
CTGCTTGGGGGTTGGGTGGGTGCATGGCGGAGGGTGCTCTCGACCCTCGG
CTTAGGATTTGAATGGGAGTGAAGACAAAACAGAGAGATAGAGAAAGAGA
GAGAAGGGTGGGCTTACTTGCATAGCATGGGAGGGGGATAAACAAGCCGC
CTGTGTATGTAGGTGAGCAGCGTACTTCAGGGCAGGGAAGGTGATCCAGA
TCACAAAGAAAAAAGAACGAAAACAACAACAAAAAATCAAATGA
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protein sequence of NO28G00930.1

>NO28G00930.1-protein ID=NO28G00930.1-protein|Name=NO28G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MAPKKVTKKPAKKAAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPR
YVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVE
KRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAH
DVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARK
EDKASFEKMCGDFKNQFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELA
KKAAF*
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Synonyms
Publications