NO28G00930.1, NO28G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00930.1
Unique NameNO28G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1388
Alignment locationchr28:303733..305776 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:303733..305776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00930.1 vs.
Match: EWM20906.1 (Ribosomal protein L7A/L8 [Nannochloropsis gaditana])

HSP 1 Score: 461.5 bits (1186), Expect = 1.800e-126
Identity = 239/255 (93.73%), Postives = 248/255 (97.25%), Query Frame = 0 
Query:    1 MAPKKVTKKPAKKAAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAHDVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKASFEKMCGDFKNQFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 256
            MAPKKV KKPAKKAAPKANPLF AEPRSFR+GGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFS AL+KNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGE  AP+KQTV+K+GLKHVTELIEAKKVKFVAIAHDVNPIELVVW+PALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKA+FEKMC +FK +FNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF
Sbjct:    1 MAPKKVAKKPAKKAAPKANPLFAAEPRSFRIGGAIRPKGRDLSRFVKWPRYVRIQRQRKILYQRLKVPPAINQFSKALDKNQATELFKLLAKYRPESKVEKRERLKQLAAAKASGGETPAPAKQTVIKYGLKHVTELIEAKKVKFVAIAHDVNPIELVVWIPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARKEDKATFEKMCAEFKLEFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELAKKAAF 255
The following BLAST results are available for this feature:
BLAST of NO28G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20906.11.800e-12693.73Ribosomal protein L7A/L8 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00930NO28G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00930.1NO28G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00930.1.cds1NO28G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00930.1.cds2NO28G00930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00930.1.cds3NO28G00930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00930.1 ID=NO28G00930.1|Name=NO28G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp
CGAGAGGCTCTGCTCGCATGAGCCCTGTGTTTGACGGGCTTCTGTCATGC
GATACCCGTGTGTGGGTTGTCTTGGATCATTGTTCGTGGGACAGGTCGAC
TGCAACTTCTTGGCGGATGCCGTGGGAGCGACGGATGGTTGAGAAGCTCC
AACCGCTGCTTCGTCTAGTGCCTTGACGATCAGCCAGCTTTCCTTCTCCC
GTCTGCCTCACACTCACGAGTCCTTCGTTTTTCCCTCCCGCTTCCCTTGT
AACCCCAGACAGGAGAGCGGAAGCTTTTTTGGTGTGTTTAACCAGAGGAC
CTAGAACACAATGGCTCCCAAGAAGGTGACGAAAAAGCCTGCCAAGAAGG
CGGCACCCAAGGCCAACCCGCTCTTCGTGGCGGAGCCCCGCAGCTTCCGC
GTCGGTGGCGCTATCCGGCCTAAGGGCCGCGACCTCTCGCGCTTCGTCAA
GTGGCCCCGCTACGTCCGCATCCAGCGGCAGCGCAAAATCTTGTACCAAC
GTCTGAAGGTGCCCCCTGCCATCAACCAGTTCTCCAATGCTCTGGAGAAG
AACCAGGCCACGGAGCTGTTCAAACTGCTGGCCAAGTACCGCCCCGAGAG
CAAGGTAGAGAAGCGCGAACGGCTCAAGCAGCTGGCGGCGGCCAAGGCAA
GTGGAGGAGAGGCAGCGGCGCCGAGCAAGCAGACCGTGGTGAAGTTTGGC
TTGAAGCACGTAACGGAGCTGATTGAGGCCAAGAAGGTGAAGTTCGTGGC
CATTGCCCACGACGTGAACCCGATCGAGTTAGTGGTGTGGCTCCCCGCGC
TGTGCCGCAAGCAGGGGATCCCCTATGCCATTGTCAAGGGGAAGGCGCGT
TTGGGCGCGCTGGTACACAAGAAGAATGCGGCGGTCGTGGCGCTAGAGGA
GGCGAGGAAGGAGGACAAAGCAAGCTTTGAGAAGATGTGCGGGGATTTCA
AGAACCAGTTCAATGACAAGAAGGAGCGAACATGGGGTGGAGGAATCATG
GGCCTCAAGACCCAGAAGCGGTTGGAGATCCGCCAACGTGCGGTGGAGGC
CGAGCTGGCCAAGAAGGCTGCTTTCTAATTTGCTCGTACACCTAGATCCA
TGAATTGACTCAGTCCGTCACGTTCCAGAAAGGTTTTTGCTTGCCTGCTT
GGGGGTTGGGTGGGTGCATGGCGGAGGGTGCTCTCGACCCTCGGCTTAGG
ATTTGAATGGGAGTGAAGACAAAACAGAGAGATAGAGAAAGAGAGAGAAG
GGTGGGCTTACTTGCATAGCATGGGAGGGGGATAAACAAGCCGCCTGTGT
ATGTAGGTGAGCAGCGTACTTCAGGGCAGGGAAGGTGATCCAGATCACAA
AGAAAAAAGAACGAAAACAACAACAAAAAATCAAATGA
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protein sequence of NO28G00930.1

>NO28G00930.1-protein ID=NO28G00930.1-protein|Name=NO28G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MAPKKVTKKPAKKAAPKANPLFVAEPRSFRVGGAIRPKGRDLSRFVKWPR
YVRIQRQRKILYQRLKVPPAINQFSNALEKNQATELFKLLAKYRPESKVE
KRERLKQLAAAKASGGEAAAPSKQTVVKFGLKHVTELIEAKKVKFVAIAH
DVNPIELVVWLPALCRKQGIPYAIVKGKARLGALVHKKNAAVVALEEARK
EDKASFEKMCGDFKNQFNDKKERTWGGGIMGLKTQKRLEIRQRAVEAELA
KKAAF*
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mRNA from alignment at chr28:303733..305776+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00930.1 ID=NO28G00930.1|Name=NO28G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp|location=Sequence derived from alignment at chr28:303733..305776+ (Nannochloropsis oceanica)
CGAGAGGCTCTGCTCGCATGAGCCCTGTGTTTGACGGGCTTCTGTCATGC
GATACCCGTGTGTGGGTTGTCTTGGATCATTGTTCGTGGGACAGGTCGAC
TGCAACTTCTTGGCGGATGCCGTGGGAGCGACGGATGGTTGAGAAGCTCC
AACCGCTGCTTCGTCTAGTGCCTTGACGATCAGCCAGCTTTCCTTCTCCC
GTCTGCCTCACACTCACGAGTCCTTCGTTTTTCCCTCCCGCTTCCCTTGT
AACCCCAGACAGGAGAGCGGAAGCTTTTTTGGTGTGTTTAACCAGAGGAC
CTAGAACACAATGGTACGTTGGTAGCTGTGAGAGGTTGGGTGGGTTTGCG
GGCGACGCGGAAGAGTTGGGAAGAAGAAAGCTGGTGCGACGCAGTGGGGC
TGTAGTCATGTAATGCGCAGCGTAAATGTGCCTAATCTCTGCGCGCATTG
TCAGCATTACTGTCCTCATAGGGGCCACTGTCGTTAAGGCTGGGTGACTG
CTGGGAGGGTTCGGCATCATCAAAGAATGGAAGGGGGGAGGGAGGACAGG
ACAGGACATATCAACCAACAACATTTGTGCGCTTGCTTTCGTGATAATTC
TCACTCACTTCATTATATATTTTTGTCCGCACAGGCTCCCAAGAAGGTGA
CGAAAAAGCCTGCCAAGAAGGCGGCACCCAAGGCCAACCCGCTCTTCGTG
GCGGAGCCCCGCAGCTTCCGCGTCGGTGGCGCTATCCGGGTGCGTAATCT
TGTGACAGGGAGAATACCAGAGGGAGTGGACAAAGGGCTTAGGATCGTCA
CGTCTATTTTATTGAAGATAGTTGTTGCTCCAGTCTCGGTGTGTTAGTAG
TTGTGTGTGTGCGTACTTCCATGCCGAGTTCCTGCGCATTCCTTGCTCTG
ATCTGATCTGTCAGGTGTTGTGATGTGGTGTTCGTGCCCGTTTTTCTCCT
TTTCCCCCGAAGCTTTTATCTGCCTAGTGACAAACACATCTGCCACACAT
CTGCCGGTCCCAATAACTGCCACTCACGCTCTTATTCCCTCCCTTTCTTC
CTCACTCCTCCCTCCTATCCACAGCCTAAGGGCCGCGACCTCTCGCGCTT
CGTCAAGTGGCCCCGCTACGTCCGCATCCAGCGGCAGCGCAAAATCTTGT
ACCAACGTCTGAAGGTGCCCCCTGCCATCAACCAGTTCTCCAATGCTCTG
GAGAAGAACCAGGCCACGGAGCTGTTCAAACTGCTGGCCAAGTACCGCCC
CGAGAGCAAGGTAGAGAAGCGCGAACGGCTCAAGCAGCTGGCGGCGGCCA
AGGCAAGTGGAGGAGAGGCAGCGGCGCCGAGCAAGCAGACCGTGGTGAAG
TTTGGCTTGAAGCACGTAACGGAGCTGATTGAGGCCAAGAAGGTGAAGTT
CGTGGCCATTGCCCACGACGTGAACCCGATCGAGTTAGTGGTGTGGCTCC
CCGCGCTGTGCCGCAAGCAGGGGATCCCCTATGCCATTGTCAAGGGGAAG
GCGCGTTTGGGCGCGCTGGTACACAAGAAGAATGCGGCGGTCGTGGCGCT
AGAGGAGGCGAGGAAGGAGGACAAAGCAAGCTTTGAGAAGATGTGCGGGG
ATTTCAAGAACCAGTTCAATGACAAGAAGGAGCGAACATGGGGTGGAGGA
ATCATGGGCCTCAAGACCCAGAAGCGGTTGGAGATCCGCCAACGTGCGGT
GGAGGCCGAGCTGGCCAAGAAGGCTGCTTTCTAATTTGCTCGTACACCTA
GATCCATGAATTGACTCAGTCCGTCACGTTCCAGAAAGGTTTTTGCTTGC
CTGCTTGGGGGTTGGGTGGGTGCATGGCGGAGGGTGCTCTCGACCCTCGG
CTTAGGATTTGAATGGGAGTGAAGACAAAACAGAGAGATAGAGAAAGAGA
GAGAAGGGTGGGCTTACTTGCATAGCATGGGAGGGGGATAAACAAGCCGC
CTGTGTATGTAGGTGAGCAGCGTACTTCAGGGCAGGGAAGGTGATCCAGA
TCACAAAGAAAAAAGAACGAAAACAACAACAAAAAATCAAATGA
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Coding sequence (CDS) from alignment at chr28:303733..305776+

>NO28G00930.1 ID=NO28G00930.1|Name=NO28G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr28:303733..305776+ (Nannochloropsis oceanica)
ATGGCTCCCAAGAAGGTGACGAAAAAGCCTGCCAAGAAGGCGGCACCCAA
GGCCAACCCGCTCTTCGTGGCGGAGCCCCGCAGCTTCCGCGTCGGTGGCG
CTATCCGGCCTAAGGGCCGCGACCTCTCGCGCTTCGTCAAGTGGCCCCGC
TACGTCCGCATCCAGCGGCAGCGCAAAATCTTGTACCAACGTCTGAAGGT
GCCCCCTGCCATCAACCAGTTCTCCAATGCTCTGGAGAAGAACCAGGCCA
CGGAGCTGTTCAAACTGCTGGCCAAGTACCGCCCCGAGAGCAAGGTAGAG
AAGCGCGAACGGCTCAAGCAGCTGGCGGCGGCCAAGGCAAGTGGAGGAGA
GGCAGCGGCGCCGAGCAAGCAGACCGTGGTGAAGTTTGGCTTGAAGCACG
TAACGGAGCTGATTGAGGCCAAGAAGGTGAAGTTCGTGGCCATTGCCCAC
GACGTGAACCCGATCGAGTTAGTGGTGTGGCTCCCCGCGCTGTGCCGCAA
GCAGGGGATCCCCTATGCCATTGTCAAGGGGAAGGCGCGTTTGGGCGCGC
TGGTACACAAGAAGAATGCGGCGGTCGTGGCGCTAGAGGAGGCGAGGAAG
GAGGACAAAGCAAGCTTTGAGAAGATGTGCGGGGATTTCAAGAACCAGTT
CAATGACAAGAAGGAGCGAACATGGGGTGGAGGAATCATGGGCCTCAAGA
CCCAGAAGCGGTTGGAGATCCGCCAACGTGCGGTGGAGGCCGAGCTGGCC
AAGAAGGCTGCTTTCTAA
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Synonyms
Publications