NO28G00020, NO28G00020 (gene) Nannochloropsis oceanica

Overview
NameNO28G00020
Unique NameNO28G00020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3769
Alignment locationchr28:1576..5344 -

Link to JBrowse

Properties
Property NameValue
DescriptionF-box protein At5g06550
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:1576..5344 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0000987proximal promoter sequence-specific DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
IPR003347JmjC_dom
Vocabulary: Biological Process
TermDefinition
GO:0043985histone H4-R3 methylation
GO:0010030positive regulation of seed germination
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO28G00020 vs. NCBI_GenBank
Match: CBN80232.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 325.9 bits (834), Expect = 2.900e-85
Identity = 193/463 (41.68%), Postives = 253/463 (54.64%), Query Frame = 0
Query:   82 HPYSVRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQ----------QHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLG-THRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLEEETHLVSGLPDADRPLLYSRFVEVLRRVCP 534
            HPY V P+G+    G + D + R  GLG  T A+  DE ++    F LDA  L RL+  SRA Y +AH   ++WK+LV+  +A         G  ++ +G WK T   +   R                       H+PL  +   +SD+L+ P+        ++   +RR   D  R    + EEFR   E PN P VL      WPA  +W R R       +   GD   +H  GL F +  Y  YA+E +D+LPLY+FD RF+DKCP L ++Y   +P  F    D F++LG   RPDHRWLI GP  SGS+FH DPN T+AWNA + GRKKWI+FPP   PPGVHPS+DGLDLA PV++TEW   FY +  A    R   +E V   GE++FVP GWWH V+N E S+AITQN+VSR NLPHV+ FL  + HL+SGLP   R  L   FV  +    P
Sbjct:   20 HPYGVEPLGNIFL-GRSSDCKPR--GLG--TLASFDDERMLDLLCF-LDAPALGRLACASRALYVFAHV-EELWKTLVVQEMAR------RPGQGVETRGGWKTTLQHIAVGRSXXXXXXXXXXXXXXXXXXXSVPHVPL-KVSGFFSDLLFQPHHCATTV--IRPEWVRRDTVD--RRAGLSPEEFRRLYEEPNRPVVLTDAAASWPALEKWTRSR------LSAAHGD-LRVHAGGLEFALKDYLRYARESKDELPLYVFDKRFVDKCPDLGREY--DVPSVFAD--DLFSVLGEERRPDHRWLIAGPARSGSSFHVDPNCTSAWNATVSGRKKWIMFPPGETPPGVHPSEDGLDLAAPVSITEWFLNFYEECHAPTR-RVRPLECVVSAGEVVFVPMGWWHCVLNLEWSVAITQNFVSRVNLPHVVKFLLTQKHLISGLPPDQRDDLGESFVTAMSEQRP 452          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: XP_015617023.1 (PREDICTED: F-box protein At5g06550 [Oryza sativa Japonica Group] >ABA94397.1 transcription factor jumonji, putative, expressed [Oryza sativa Japonica Group] >BAF28491.1 Os11g0572800 [Oryza sativa Japonica Group] >BAT14541.1 Os11g0572800 [Oryza sativa Japonica Group])

HSP 1 Score: 317.0 bits (811), Expect = 1.300e-82
Identity = 200/504 (39.68%), Postives = 282/504 (55.95%), Query Frame = 0
Query:   52 DKTLSHTDRGAEAGGACTTAGHRERKHGGRHPYSVRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQQHIPLHSLP--AVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLE--EETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVRE 552
            D T  H    A AG     AG   R  GG     V+P+G+ L  G   ++R    GLG      +PD+ L+   L LL A  LARLS  SRA Y  A ++  +W++LVL  L          G    + GSW+ATY+           ++    + H+P   L     YSD L+  +  +    +++   L R   D  R R  +VE+F ++ E PN P +LEG +E WPA ++W RE   L +V+A   G  + +    +S T+  Y  YA   Q++ PLY+FD++F +K P + +DY   +P YF++  D F +LG  RPDHRW+I GP GSGS+FH DPN+T+AWNAV+KG KKW++FPP ++PPGVHPS DG ++ +PV++ EW   FY    A + W +  VE +C  GE++FVP GWWHLV+N EES+AITQNYVSR NL +VL FL+    + LVSG    DR  L+ +F   +    P  + Q + E  Q    R+
Sbjct:   49 DATAFHLKTSARAGPG--GAGSGRRGDGG---CLVQPLGNLLLLGGGGNLRDA--GLG--ALRPLPDDVLLDV-LGLLAARDLARLSAASRALYVVA-SHDPLWRALVLDEL----------GGDFAFSGSWRATYI-----------AAASGGRAHLPPRGLEIRGFYSDYLFQSW--LCANMEMRPEWLHRDTID--RRRGMSVEQFVSEFEEPNRPVLLEGCLESWPALQKWTREH--LLKVSA---GKEFAV--GPVSMTLDRYLQYADNVQEERPLYLFDAKFTEKVPEMGRDY--EVPAYFRE--DLFGVLGEERPDHRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADGAEVTSPVSIMEWFMNFYG---ACKTWEKRPVECICRAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASELVSG--TTDRVNLHDKFRNAIDMTYPGMIKQLELEAQQKAAARK 500          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: OEL36465.1 (F-box protein [Dichanthelium oligosanthes])

HSP 1 Score: 313.9 bits (803), Expect = 1.100e-81
Identity = 187/470 (39.79%), Postives = 267/470 (56.81%), Query Frame = 0
Query:   86 VRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQQHIPLHSLP--AVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLEE--ETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVRE 552
            V+P+G+ L    +   R      G      +PD+ L+   L LL A  LA LS  S+  Y  A A+  +W++LVL  L          G   D+ GSW+ATY+    +   +FS     R   IP  +L     YSD L+  +   A  E     L R    +I R R  +VE+F A+ E PN P +LEG ++GWPA ++W R     D +     G  + +    +S T+  Y  YA   Q++ PLY+FD++F +K P + +DY   +P YF++  D F++LG  RPD+RW+I GP GSGS+FH DPN+T+AWNA++KG KKW++FPP ++PPGVHPS DG ++ +PV++ EW   FY    A + W +  +E VC  GE++FVP GWWHLV+N EES+AITQNYVSR NL +VL FL++   + LVSG    DR  L+ +F   +    P  ++Q Q E  Q    R+
Sbjct:   56 VQPLGNLL---LSSSPRGNLRDAGLGALRPLPDDLLLDV-LGLLPARDLAALSAASKGLYVVA-AHDPLWRALVLDEL----------GGAFDFAGSWRATYI----AAAAAFSGG---RPHLIPPRALKIRGFYSDYLFQSW-LCANMEMRHEWLAR---DNIERRRGVSVEQFIAEVEEPNRPVLLEGCIDGWPALQKWSR-----DYLLEISAGKEFAV--GPVSMTLDRYFRYADNVQEERPLYLFDAKFAEKVPEMGRDY--EVPVYFRE--DLFSVLGEERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAIIKGSKKWVMFPPEVVPPGVHPSADGAEVTSPVSIMEWFMNFYG---ACKTWEKRPIECVCRAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKKPNASELVSG--TKDRVNLHEKFHGAIEAAHPGMINQLQLEAQQKAAARK 483          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: OQR91992.1 (histone arginine demethylase [Thraustotheca clavata])

HSP 1 Score: 312.8 bits (800), Expect = 2.500e-81
Identity = 181/453 (39.96%), Postives = 249/453 (54.97%), Query Frame = 0
Query:   82 HPYSVRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWY--CYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKP-----TVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLEEETHLVSGLPDADRPLLYSRFVEV 528
            HP  V+P G+  +    +     C G G    A + D  L   F + L    LA  S  SRAWY  CY   Y   W++ VL               +   K +W+ +Y++ L        + T   ++H+ +      YSD+ + PY      EK    LL     +I  + +      +VE+F  Q E PNLP +L  V+  WPA + W       D    +  GDT   +  G   T+  Y  YA+   DD PL+IFD  F    P LA+DY   +P YFQ   D+F LLGT RPD+RW I+GPKGSGS+FH DPN+T AWNA+++G KKWI+FPP I+PPGVHPSDDG +++TPV+L EW   FYS   ++       +E V  EGEI+FVP+GWWHLV+N EE LAITQN+V +++L   LSFL ++   VSG+P+ +RP LY++F +V
Sbjct:   15 HPLGVKPWGN--SFNDMDKGIVPCRGRGLGRLAALADTNLNAIFDY-LTPKDLALTSTTSRAWYVLCYHDEY---WRTFVLEQF----------NGQFTPKSTWRRSYIATL------VPTDTLNVKEHVKVEGF---YSDLFFQPYYCAQAPEK----LLSNHSMNIETIPRVDGNSLSVEDFEKQYEKPNLPVILTNVVTSWPAMKLWN------DEYLYKTCGDT-KFYAGGFHMTMQQYLNYARTLHDDQPLFIFDKNFSSTVPQLAKDY--SVPKYFQ--TDFFKLLGTERPDYRWFIFGPKGSGSSFHIDPNSTCAWNAIIRGAKKWIMFPPDIVPPGVHPSDDGGEVSTPVSLMEWFVTFYSQIKSKSPVH---LEGVVREGEIIFVPKGWWHLVLNIEECLAITQNFVCKSSLMDTLSFLTDKPDQVSGVPEEERPKLYNKFRKV 424          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: XP_004979531.1 (F-box protein At5g06550 [Setaria italica] >KQK95017.1 hypothetical protein SETIT_026250mg [Setaria italica])

HSP 1 Score: 312.0 bits (798), Expect = 4.300e-81
Identity = 186/478 (38.91%), Postives = 267/478 (55.86%), Query Frame = 0
Query:   86 VRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLS--------LLPSRPLSFSSSTHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLEE--ETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVRETE 554
            V+P+G+     T    R      G      +PD+ L+   L LL A  LA LS  S+A Y  A A+  +W++ VL  L          G   D+ GSW+ TY++        L+P R L                 +   YSD L+  +   A  E     L R    +I R R  +VE+F A+ E PN P +LEG ++GWPA ++W RE   L  ++A   G  + +    +S T+  Y  YA   Q++ PLY+FD++F +K P + +DY   +P YF++  D F++LG  RPD+RW+I GP GSGS+FH DPN+T+AWNA++KG KKW++FPP ++PPGVHPS DG ++ +PV++ EW   FY    A + W +  +E VC  GE++FVP GWWHLV+N EES+AITQNYVSR NL +VL FL++   + LVSG    DR  L+ +F   +    P  ++Q Q E  Q    R+ +
Sbjct:   61 VQPLGNLFLAATP---RANLRDAGLGALRPLPDDLLLDV-LGLLPARDLAALSAASKALYVVA-AHDPLWRAFVLDEL----------GGAFDFAGSWRTTYIAAASGGQPHLIPPRAL----------------KIRGFYSDYLFQSW-LCANMEMRHEWLAR---DNIERRRGISVEQFIAEVEEPNRPVLLEGCIDGWPALQKWSRE--YLLEISA---GKEFAV--GPVSMTLDRYFRYADNVQEERPLYLFDAKFAEKVPEMGRDY--EVPVYFRE--DLFSVLGEERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAIIKGSKKWVMFPPEVVPPGVHPSADGAEVTSPVSIMEWFMNFYG---ACKTWEKRPIECVCRAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKKPNASELVSG--TKDRVNLHDKFCGAIEATHPGMINQLQLEAQQKAAARKKQ 487          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: XP_024361963.1 (F-box protein At5g06550-like isoform X2 [Physcomitrella patens] >PNR29461.1 hypothetical protein PHYPA_028154 [Physcomitrella patens])

HSP 1 Score: 312.0 bits (798), Expect = 4.300e-81
Identity = 195/479 (40.71%), Postives = 274/479 (57.20%), Query Frame = 0
Query:   74 RERKHG---GRHPYSVRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLE--EETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQAR 548
            +E ++G   G H Y ++P+G+ L      +VR    GLG  T   + DE ++   L  LD   LARL+  SRA+Y +AH    +W++LVL S              L +KG WK TYL+         S + +  + H+PL  +   YSD L+  +   A  E +K   L     +I R    +VE+F    E  N P +L GVME WPA ++W RE  L      +  GD     G  +   +  Y  YA   +++ PLYIFDS+F +K P LA DY   +P YF++  D F +LG  RPD+RWLI GP  SGS+FH DPN+T+AWNAV++G KKW+++PP ++PPGV PS DG D+ATPV++TEW   FY +        E  +E +C EGE++FVPRGWWH+V+N EES+AITQN+VSR+N+ +VL FL      HLVSG    DR  LY +F      + P ++ +A +E+ +AR
Sbjct:  125 QENQYGLQRGSHSYGIQPLGNLLLSTQGCNVRD--TGLG--TLQVLSDE-IICDILGNLDGRDLARLALVSRAFYVFAH-QDSLWRNLVLDSYK----------GELAFKGCWKTTYLA---------SHALNVGKLHLPL-KVKDFYSDYLFQSW-LCANLE-IKPEWL--SADNIERRENLSVEDFIRDFEEQNKPVLLRGVMESWPALKKWDREYLL------KHAGDVDFAAG-PIHLKLSDYYKYADLVEEERPLYIFDSKFAEKVPQLAADY--DVPIYFRE--DLFRILGEERPDYRWLIAGPARSGSSFHIDPNSTSAWNAVVRGAKKWVMYPPEVVPPGVFPSPDGADVATPVSITEWFMNFYGETKKR---AERPIECICREGEVVFVPRGWWHIVINLEESIAITQNFVSRSNILNVLEFLSRPNSQHLVSG--TKDRVNLYEKFRSRYESLYPGSV-EAIKEKTEAR 556          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: XP_024361962.1 (F-box protein At5g06550-like isoform X1 [Physcomitrella patens])

HSP 1 Score: 312.0 bits (798), Expect = 4.300e-81
Identity = 195/479 (40.71%), Postives = 274/479 (57.20%), Query Frame = 0
Query:   74 RERKHG---GRHPYSVRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLE--EETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQAR 548
            +E ++G   G H Y ++P+G+ L      +VR    GLG  T   + DE ++   L  LD   LARL+  SRA+Y +AH    +W++LVL S              L +KG WK TYL+         S + +  + H+PL  +   YSD L+  +   A  E +K   L     +I R    +VE+F    E  N P +L GVME WPA ++W RE  L      +  GD     G  +   +  Y  YA   +++ PLYIFDS+F +K P LA DY   +P YF++  D F +LG  RPD+RWLI GP  SGS+FH DPN+T+AWNAV++G KKW+++PP ++PPGV PS DG D+ATPV++TEW   FY +        E  +E +C EGE++FVPRGWWH+V+N EES+AITQN+VSR+N+ +VL FL      HLVSG    DR  LY +F      + P ++ +A +E+ +AR
Sbjct:  132 QENQYGLQRGSHSYGIQPLGNLLLSTQGCNVRD--TGLG--TLQVLSDE-IICDILGNLDGRDLARLALVSRAFYVFAH-QDSLWRNLVLDSYK----------GELAFKGCWKTTYLA---------SHALNVGKLHLPL-KVKDFYSDYLFQSW-LCANLE-IKPEWL--SADNIERRENLSVEDFIRDFEEQNKPVLLRGVMESWPALKKWDREYLL------KHAGDVDFAAG-PIHLKLSDYYKYADLVEEERPLYIFDSKFAEKVPQLAADY--DVPIYFRE--DLFRILGEERPDYRWLIAGPARSGSSFHIDPNSTSAWNAVVRGAKKWVMYPPEVVPPGVFPSPDGADVATPVSITEWFMNFYGETKKR---AERPIECICREGEVVFVPRGWWHIVINLEESIAITQNFVSRSNILNVLEFLSRPNSQHLVSG--TKDRVNLYEKFRSRYESLYPGSV-EAIKEKTEAR 563          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: KZV48987.1 (calcium-dependent protein kinase 20-like [Dorcoceras hygrometricum])

HSP 1 Score: 311.6 bits (797), Expect = 5.600e-81
Identity = 187/482 (38.80%), Postives = 274/482 (56.85%), Query Frame = 0
Query:   82 HPYSVRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLEEET--HLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVRETEEEKMKAGW 562
            H + V+P+G+   + +A  V  R  GLG     T+ DE ++   L LL    L  LS  S+++Y + + +  +W+S+VL         E  +G  L YKGSW+ TYL         F  S    +  I + +    YSD L+  +   A  E +K   L R   +I R +  +VEEF    E PN P +LEG M+ WPA ++W  +R  L +V  + K          +   +  Y  Y+ + +++ PLY+FD +F++K P L  DY    P YF +  D F++LG  RPD+RW+I GP GSGS+FH DPN+T+AWNAV+KG KKW+LFPP ++PPGVHPS DG ++A PV++ EW   FY+D    + W++  +E VC+ GE++FVP GWWHLV+N E+S+AITQN+VSR N+ +VL FL+      LVSG    DR  L+ +F   +    P  LDQ     L+ +   +T++EK  + W
Sbjct:   69 HSHGVQPLGN--LYFSASSVNSRNTGLG--NLQTLTDEVILEV-LGLLSGTELGILSTVSKSFYVFCN-HEPLWRSIVL---------ESCKGGFL-YKGSWRHTYLG-------EFKCSCVMGKSGIKVRNF---YSDYLFQSW-LCANLE-MKPEWLER--DNIARRKGISVEEFLLNFEEPNKPVLLEGCMDNWPALKKW--DRDYLLKVCEDVK-----FSAGPVEMKLDDYFRYSDQVREERPLYLFDPKFVEKVPQLGVDY--DTPAYFNE--DLFSVLGDERPDYRWIIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVLFPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYADT---KSWKKKPIECVCKAGEVVFVPNGWWHLVINLEDSIAITQNFVSRRNILNVLDFLKRPNACTLVSG--TRDRVSLHEKFKNAIESYLPGVLDQ-----LRMKAQEKTDQEKKLSFW 499          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: PAN43138.1 (hypothetical protein PAHAL_H01422 [Panicum hallii] >PAN43139.1 hypothetical protein PAHAL_H01422 [Panicum hallii] >PAN43140.1 hypothetical protein PAHAL_H01422 [Panicum hallii])

HSP 1 Score: 311.6 bits (797), Expect = 5.600e-81
Identity = 188/470 (40.00%), Postives = 271/470 (57.66%), Query Frame = 0
Query:   86 VRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQQHIPLHSL--PAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLE--EETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVRE 552
            V+P+G+ L    +     R  GLG      +PD+ L+   L LL A  LA LS  S+A Y  A A+  +W++LVL          G  G   D+ GSW+ATY+          ++++  R   IP  +L     YSD L+  +   A  E     L R    +I R R  +VE+F A+ E PN P +LEG ++ WPA ++W RE   L  ++A   G  + +    +S T+  Y  YA   Q++ PLY+FD++F +K P + +DY   +P YF++  D F++LG  RPD+RW+I GP GSGS+FH DPN+T+AWNA++KG KKW++FPP ++PPGVHPS DG ++ +PV++ EW   FY    A + W +  +E +C  GE++FVP GWWHLV+N EES+AITQNYVSR NL +VL FL+    + LVSG    DR  L+ +F   +    P  ++Q Q E  Q    R+
Sbjct:   68 VQPLGNLLL-SASPGANLRDAGLG--ALRPLPDDLLLDV-LGLLPARALAALSAASKALYVVA-AHDPLWRALVL----------GELGGAFDFAGSWRATYV----------AAASGGRPHLIPPRALRIRGFYSDYLFQSW-LCANMEMRHEWLAR---DNIERRRGVSVEQFIAEVEEPNRPVLLEGCLDSWPALQKWSRE--YLLEISA---GKEFAV--GPVSMTLDRYFRYADNVQEERPLYLFDAKFAEKVPEMGRDY--EVPVYFRE--DLFSVLGEERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAIIKGAKKWVMFPPEVVPPGVHPSADGAEVTSPVSIMEWFMNFYG---ACKTWEKRPIECICRAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASELVSG--TKDRVNLHDKFRGAIDAAHPGMINQLQFEAQQKAAARK 492          
BLAST of NO28G00020 vs. NCBI_GenBank
Match: PUZ45280.1 (hypothetical protein GQ55_8G209300 [Panicum hallii var. hallii])

HSP 1 Score: 311.6 bits (797), Expect = 5.600e-81
Identity = 188/470 (40.00%), Postives = 270/470 (57.45%), Query Frame = 0
Query:   86 VRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSSSTHQRQQHIPLHSL--PAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLE--EETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVRE 552
            V+P+G+ L    +     R  GLG      +PD+ L+   L LL A  LA LS  S+A Y  A A+  +W++LVL          G  G   D+ GSW+ATY+          ++++  R   IP  +L     YSD L+  +   A  E     L R    +I R R  +VE+F A+ E PN P +LEG ++ WPA ++W RE   L  ++A   G  + +    +S T+  Y  YA   Q++ PLY+FD++F +K P + +DY   +P YF++  D F++LG  RPD+RW+I GP GSGS+FH DPN+T+AWNA++KG KKW++FPP ++PPGVHPS DG ++ +PV++ EW   FY    A + W +  +E +C  GE++FVP GWWHLV+N EES+AITQNYVSR NL  VL FL+    + LVSG    DR  L+ +F   +    P  ++Q Q E  Q    R+
Sbjct:   68 VQPLGNLLL-SASPGANLRDAGLG--ALRPLPDDLLLDV-LGLLPARALAALSAASKALYVVA-AHDPLWRALVL----------GELGGAFDFAGSWRATYV----------AAASGGRPHLIPPRALRIRGFYSDYLFQSW-LCANMEMRHEWLAR---DNIERRRGVSVEQFIAEVEEPNRPVLLEGCLDSWPALQKWSRE--YLLEISA---GKEFAV--GPVSMTLDRYFRYADNVQEERPLYLFDAKFAEKVPEMGRDY--EVPVYFRE--DLFSVLGEERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAIIKGAKKWVMFPPEVVPPGVHPSADGAEVTSPVSIMEWFMNFYG---ACKTWEKRPIECICRAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLDVLDFLKRPNASELVSG--TKDRVNLHDKFHGAIEAAHPGMINQLQLEAQQKAAARK 492          
The following BLAST results are available for this feature:
BLAST of NO28G00020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBN80232.12.900e-8541.68conserved unknown protein [Ectocarpus siliculosus][more]
XP_015617023.11.300e-8239.68PREDICTED: F-box protein At5g06550 [Oryza sativa J... [more]
OEL36465.11.100e-8139.79F-box protein [Dichanthelium oligosanthes][more]
OQR91992.12.500e-8139.96histone arginine demethylase [Thraustotheca clavat... [more]
XP_004979531.14.300e-8138.91F-box protein At5g06550 [Setaria italica] >KQK9501... [more]
XP_024361963.14.300e-8140.71F-box protein At5g06550-like isoform X2 [Physcomit... [more]
XP_024361962.14.300e-8140.71F-box protein At5g06550-like isoform X1 [Physcomit... [more]
KZV48987.15.600e-8138.80calcium-dependent protein kinase 20-like [Dorcocer... [more]
PAN43138.15.600e-8140.00hypothetical protein PAHAL_H01422 [Panicum hallii]... [more]
PUZ45280.15.600e-8140.00hypothetical protein GQ55_8G209300 [Panicum hallii... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR088ncniR088Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR143ngnoR143Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00020.3NO28G00020.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G00020.2NO28G00020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G00020.1NO28G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612611gene_10986Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101534g1gene4491Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00020.3NO28G00020.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G00020.2NO28G00020.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G00020.1NO28G00020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00020 ID=NO28G00020|Name=NO28G00020|organism=Nannochloropsis oceanica|type=gene|length=3769bp
AGAGCCATGCGAGCTGGTGAGCCTGACAGAATTCTGCCATCAGCTGTGCC
ATCGGCCAAAAAGAACAAACTATCGCAGCCATCATCACTCGTTGATACTG
CTGCTTCAGCTGCTACTACTGCTACTGCTACCGAGCCCAAGGTGAGATGG
TGCGAGGAGGACAAGACATTAAGCCATACAGATAGAGGAGCTGAAGCAGG
AGGAGCATGCACCACAGCTGGACATAGAGAAAGAAAACACGGAGGAAGGC
ATCCTTACAGCGTGAGGCCGATGGGGGACTACCTGGCCCACGGAACGGCC
GAGgtgaggagaaggaaagggtgggcggggtcatgtgacagggaagggaa
gaaatgtgcacaaaaaaaaatattttcttggatacaactcccgctctttc
ctcccgctctttcctccggctcgtcctcccgctctttcctcccgcttttt
cctccctgtctcaacagaaggtgcgggggttgagatatgcttacacccac
tccatccctccactctcgcaaccatctcccagGATGTGCGGCACCGCTGC
AACGGCTTGGGCCCCAGCACCTTTGCAACCGTCCCTGACGAAGCCCTGGT
GCACACTTTCCTCTTCCTCTTGGACGCAGCAACGCTCGCCCGTCTCTCCC
GCTGCTCTCGCGCGTGGTATTGCTATGCTCACGCGTACACCGACGTTTGG
AAGAGCCTCGTGCTGACTTCGTTGGCAGAGAGgtgagaccgtgaggggag
agggacagggagggagggagtgcgagtagagatgatgatgttgtcggtag
ggatgatgaggttctccggaagggacgtggaagaccaaaataaatgcgtt
catgcccttcttatatccgtcggcctttctccctcctttctatcgttctc
tctttccctgccttcttcgcatatccactcaccaacctctatcttctcct
caccataacctgacactcacgccacctccaccagCGAGTGTGGAGAAGGA
AGCGAGGGCGCTCGTCTCGACTACAAGGGCAGCTGGAAGGCGACCTACCT
CTCCCTCCTCCCCTCCCGCCCACTCTCCTTTTCATCCTCCACACATCAGC
GCCAGCAACACATACCTCTACACTCCCTCCCCGCTGTCTATTCGGACGTG
CTGTACGCCCCGTATGGAGCTGTAGCGCGGTTCGAGAAGGTCAAGGCCCG
GCTGCTACGAAGAAGGGAGAAGGACATCTTGCGTCTGAGGAAGCCGACAG
TCGAGgtgagaaggggaggaagggagcaattgacgagtgggaggaaggaa
gggcggaaagaatacaggagagatcgacctaaaagaggaaaagctctgga
ttaagtttgtcctcatacacacactcttgcctcccttactacccccctcc
ctcccaccacccagGAGTTCCGGGCCCAGTGCGAGGCCCCCAACTTGCCC
TGCGTCTTGGAGGGCGTGATGGAGGGGTGGCCGGCCAGGAGGGAATGGGG
AAGGGAGCGGGGGCTGCTGGACAGGGTCACGGCGGAGGGGAAGGGAGgta
aaacggacgggcctggaatctggaatgggggaaagagagggagagagggc
aggacggagaaattaaaaaggtatgccttctagaactcatacgcgtcact
tctcctatccctccctccctccttcccttcctccctgccagACACCTATA
CCTTGCACGGCAATGGCCTGTCCTTTACCGTGCCCGCCTACTCCACCTAC
GCCCAGGAGCAGCAGGACGACCTGCCCTTGTACATCTTCGATTCCCGCTT
CCTCGACAAGTGCCCGGCCCTCGCTCAAGACTACATTCCCTTCCTTCCCC
CCTACTTCCAGCAGgtagggacgtgacgatacccggagagcagcgaggtt
tctcgccctccctccggcctttctcatcactttgcccttctcctgcctgt
ccctctcaccctccctctctccgttcctaactattttgcctctgtagccc
ggcaccactcaggtcaagatctcatgctccctccattcctccttccctcc
ttccctctttccatccatctctcctccccttcgtgaccctagGACGCCGA
CTACTTTGCCCTCCTAGGCACGCACAGACCGGACCACCGCTGGTTGATCT
GGGGGCCCAAAGGCTCGGGCTCGACATTCCACAAGgtgcgaggggaggag
ggagggagggaagaagggagataggaagggagggagggagcgagggaggg
aggaagagaagaagagaggcggaatatatgctttgaggagtaatctgttg
aaaaggaaatacatattcaagatgagctcgatcttgtctccttggatggt
tgccttccattaagtgacgtgctttcacttcctcttccctccctccctcc
tttcttcggtcccttcttccctcccgcccagGACCCTAACGCCACTGCGG
CCTGGAATGCGGTATTGAAGGGTCGGAAGAAGTGGATCCTCTTCCCTCCC
CACATAATCCCGCCCGGCGTCCACCCGTCCGACGATGgtagggagaagaa
ggaggggagggagaggggaaggaagggaatgaatagatggagggaaagcg
ggagtgaggagaagggagcaggggggcctcagatattagcctggtttatg
ggggatgcatgagagcgcaattaacatatgacgacgagtctatcatcctc
aatcctcctccaacaatccttatttctctttcctccctctctccccctct
ccctcagGGCTGGACCTGGCCACGCCTGTGACACTGACGGAGTGGGTGGA
GGGCTTTTACTCAGACGCCACGGCGGAGCAAGGATGGAGGGAAAGCGTGG
TGGAGGCCGTGTGCGAGGAAGGGGAGATCATGTTTGTGCCTCGAGgtgag
gagaaagaaggagggaaggaggaagccaaggagattgaatagaatcgatg
acaggagcacaaccaaaaaggggcttgaagacgaaaagagcgaggtgtcc
tcaagaagataaggctcgagtactttaacacagaaaacgattccagcgtc
ccttcacccctctgatctctccacttctctatactctgccctcttttctc
gccgtctttcagGCTGGTGGCATCTGGTGGTCAACACCGAGGAATCTCTG
GCCATAACCCAGAACTACGTCTCCCGAGCCAACCTGCCCCACGTCCTCTC
CTTCCTTGAGGAGGAGACTCACCTGGTGAGTGGCCTGCCTGACGCCGACC
GGCCCTTGCTCTACTCTCGGTTTGTGGAGGTGCTGCGTCGCGTTTGTCCG
AAGGCTTTGGACCAGGCGCAGGAGGAGCGGCTGCAGGCGCGGAGGGTGAG
GGAGACGGAGGAAGAGAAGATGAAGGCGGGATGGACTGGATGCCAAAGGA
AGTGGAGCGCTGTAATGGGCATAACGGACGATAGCTATAGAGAGAAGGAG
GAGGCGGGGCTGGGAGACGCAAAACATCAGCAATGTAGGTCGTCATCGAG
AGAAAATGATGAAAAGAAGGTTGAGCAAAGAGGTGGACCAGGGGGAGGAG
AAGATGGAAGAGAGGGAGGAGAGGGAGGAGGACGTGGTTTCCAATTTGGA
TTCCACTTCGCGGTTGATGGGGGAAAATGACAAACTGTGCACGGCCACTA
CCACCACCGATAATACCAACACCAGCCATTTTTCTTATCTGCGGAATGGG
GGGAACATGGATCAAAATTTTCTATGTCCATTTTGTTGAAGCCAATCAAA
GAAAGCATAAATCTAAGCA
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protein sequence of NO28G00020.3

>NO28G00020.3-protein ID=NO28G00020.3-protein|Name=NO28G00020.3|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MRAGEPDRILPSAVPSAKKNKLSQPSSLVDTAASAATTATATEPKVRWCE
EDKTLSHTDRGAEAGGACTTAGHRERKHGGRHPYSVRPMGDYLAHGTAED
VRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHA
YTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSS
STHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRL
RKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKG
DTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIP
FLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAV
LKGRKKWILFPPHIIPPGVHPSDDGREKKEGRERGRKGMNRWRESGSEEK
GAGGPQILAWFMGDA*
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protein sequence of NO28G00020.2

>NO28G00020.2-protein ID=NO28G00020.2-protein|Name=NO28G00020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MRAGEPDRILPSAVPSAKKNKLSQPSSLVDTAASAATTATATEPKVRWCE
EDKTLSHTDRGAEAGGACTTAGHRERKHGGRHPYSVRPMGDYLAHGTAED
VRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHA
YTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSS
STHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRL
RKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKG
DTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIP
FLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAV
LKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQG
WRESVVEAVCEEGEIMFVPRGEEKEGGKEEAKEIE*
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protein sequence of NO28G00020.1

>NO28G00020.1-protein ID=NO28G00020.1-protein|Name=NO28G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MRAGEPDRILPSAVPSAKKNKLSQPSSLVDTAASAATTATATEPKVRWCE
EDKTLSHTDRGAEAGGACTTAGHRERKHGGRHPYSVRPMGDYLAHGTAED
VRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHA
YTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSS
STHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRL
RKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKG
DTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIP
FLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAV
LKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQG
WRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLS
FLEEETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVR
ETEEEKMKAGWTGCQRKWSAVMGITDDSYREKEEAGLGDAKHQQCRSSSR
ENDEKKVEQRGGPGGGEDGREGGEGGGRGFQFGFHFAVDGGK*
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Synonyms
Publications