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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:1576..5344 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00020.1 vs.
Match: EAY81379.1 (hypothetical protein OsI_36550 [Oryza sativa Indica Group]) HSP 1 Score: 319.3 bits (817), Expect = 2.700e-83 Identity = 200/510 (39.22%), Postives = 277/510 (54.31%), Query Frame = 0
Query: 52 DKTLSHTDRGAEAGGACTTAGHRERKHGGRHPYSVRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLS--------LLPSRPLSFSSSTHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQGWRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLSFLE--EETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVRE 552
D T H A AG +G R G V+P+G+ L G E G +PD+ L+ L LL A LARLS SRA Y A ++ +W++LVL L G + GSW+ATY++ LLP R L + YSD L+ + A E ++ L R I R R +VE+F ++ E PN P +LEG +E WPA ++W RE L +V+A G + + +S T+ Y YA Q++ PLY+FD++F +K P + +DY +P YF++D F +LG RPDHRW+I GP GSGS+FH DPN+T+AWNAV+KG KKW++FPP ++PPGVHPS DG ++ +PV++ EW FY A + W + VE +C GE++FVP GWWHLV+N EES+AITQNYVSR NL +VL FL+ + LVSG DR L+ +F + P + Q + E Q R+
Sbjct: 49 DATSFHLKTSARAGTGGAGSGRR-----GGGGCLVQPLGNLLLLGGGEGGGGNLRDAGLGALRPLPDDVLLDV-LGLLAARDLARLSAASRALYVVA-SHDPLWRALVLDEL----------GGDFAFSGSWRATYIAAASGGRAHLLPPRGLE----------------IRGFYSDYLFQSW-LCANME-MRPEWLHR--DTIERRRGMSVEQFVSEFEEPNRPVLLEGCLESWPALQKWTREHLL--KVSA---GKEFAV--GAVSMTLDRYLQYADNVQEERPLYLFDAKFTEKVPEMGRDYE--VPAYFREDL--FGVLGEERPDHRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADGAEVTSPVSIMEWFMNFYG---ACKTWEKRPVECICRAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASELVSG--TTDRVNLHDKFRNAIDMTYPGMIKQLELEAQQKAAARK 505
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00020.1 ID=NO28G00020.1|Name=NO28G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2074bp
AGAGCCATGCGAGCTGGTGAGCCTGACAGAATTCTGCCATCAGCTGTGCC
ATCGGCCAAAAAGAACAAACTATCGCAGCCATCATCACTCGTTGATACTG
CTGCTTCAGCTGCTACTACTGCTACTGCTACCGAGCCCAAGGTGAGATGG
TGCGAGGAGGACAAGACATTAAGCCATACAGATAGAGGAGCTGAAGCAGG
AGGAGCATGCACCACAGCTGGACATAGAGAAAGAAAACACGGAGGAAGGC
ATCCTTACAGCGTGAGGCCGATGGGGGACTACCTGGCCCACGGAACGGCC
GAGGATGTGCGGCACCGCTGCAACGGCTTGGGCCCCAGCACCTTTGCAAC
CGTCCCTGACGAAGCCCTGGTGCACACTTTCCTCTTCCTCTTGGACGCAG
CAACGCTCGCCCGTCTCTCCCGCTGCTCTCGCGCGTGGTATTGCTATGCT
CACGCGTACACCGACGTTTGGAAGAGCCTCGTGCTGACTTCGTTGGCAGA
GAGCGAGTGTGGAGAAGGAAGCGAGGGCGCTCGTCTCGACTACAAGGGCA
GCTGGAAGGCGACCTACCTCTCCCTCCTCCCCTCCCGCCCACTCTCCTTT
TCATCCTCCACACATCAGCGCCAGCAACACATACCTCTACACTCCCTCCC
CGCTGTCTATTCGGACGTGCTGTACGCCCCGTATGGAGCTGTAGCGCGGT
TCGAGAAGGTCAAGGCCCGGCTGCTACGAAGAAGGGAGAAGGACATCTTG
CGTCTGAGGAAGCCGACAGTCGAGGAGTTCCGGGCCCAGTGCGAGGCCCC
CAACTTGCCCTGCGTCTTGGAGGGCGTGATGGAGGGGTGGCCGGCCAGGA
GGGAATGGGGAAGGGAGCGGGGGCTGCTGGACAGGGTCACGGCGGAGGGG
AAGGGAGACACCTATACCTTGCACGGCAATGGCCTGTCCTTTACCGTGCC
CGCCTACTCCACCTACGCCCAGGAGCAGCAGGACGACCTGCCCTTGTACA
TCTTCGATTCCCGCTTCCTCGACAAGTGCCCGGCCCTCGCTCAAGACTAC
ATTCCCTTCCTTCCCCCCTACTTCCAGCAGGACGCCGACTACTTTGCCCT
CCTAGGCACGCACAGACCGGACCACCGCTGGTTGATCTGGGGGCCCAAAG
GCTCGGGCTCGACATTCCACAAGGACCCTAACGCCACTGCGGCCTGGAAT
GCGGTATTGAAGGGTCGGAAGAAGTGGATCCTCTTCCCTCCCCACATAAT
CCCGCCCGGCGTCCACCCGTCCGACGATGGGCTGGACCTGGCCACGCCTG
TGACACTGACGGAGTGGGTGGAGGGCTTTTACTCAGACGCCACGGCGGAG
CAAGGATGGAGGGAAAGCGTGGTGGAGGCCGTGTGCGAGGAAGGGGAGAT
CATGTTTGTGCCTCGAGGCTGGTGGCATCTGGTGGTCAACACCGAGGAAT
CTCTGGCCATAACCCAGAACTACGTCTCCCGAGCCAACCTGCCCCACGTC
CTCTCCTTCCTTGAGGAGGAGACTCACCTGGTGAGTGGCCTGCCTGACGC
CGACCGGCCCTTGCTCTACTCTCGGTTTGTGGAGGTGCTGCGTCGCGTTT
GTCCGAAGGCTTTGGACCAGGCGCAGGAGGAGCGGCTGCAGGCGCGGAGG
GTGAGGGAGACGGAGGAAGAGAAGATGAAGGCGGGATGGACTGGATGCCA
AAGGAAGTGGAGCGCTGTAATGGGCATAACGGACGATAGCTATAGAGAGA
AGGAGGAGGCGGGGCTGGGAGACGCAAAACATCAGCAATGTAGGTCGTCA
TCGAGAGAAAATGATGAAAAGAAGGTTGAGCAAAGAGGTGGACCAGGGGG
AGGAGAAGATGGAAGAGAGGGAGGAGAGGGAGGAGGACGTGGTTTCCAAT
TTGGATTCCACTTCGCGGTTGATGGGGGAAAATGACAAACTGTGCACGGC
CACTACCACCACCGATAATACCAACACCAGCCATTTTTCTTATCTGCGGA
ATGGGGGGAACATGGATCAAAATTTTCTATGTCCATTTTGTTGAAGCCAA
TCAAAGAAAGCATAAATCTAAGCA back to topprotein sequence of NO28G00020.1 >NO28G00020.1-protein ID=NO28G00020.1-protein|Name=NO28G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=643bp
MRAGEPDRILPSAVPSAKKNKLSQPSSLVDTAASAATTATATEPKVRWCE
EDKTLSHTDRGAEAGGACTTAGHRERKHGGRHPYSVRPMGDYLAHGTAED
VRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHA
YTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSS
STHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRL
RKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKG
DTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIP
FLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAV
LKGRKKWILFPPHIIPPGVHPSDDGLDLATPVTLTEWVEGFYSDATAEQG
WRESVVEAVCEEGEIMFVPRGWWHLVVNTEESLAITQNYVSRANLPHVLS
FLEEETHLVSGLPDADRPLLYSRFVEVLRRVCPKALDQAQEERLQARRVR
ETEEEKMKAGWTGCQRKWSAVMGITDDSYREKEEAGLGDAKHQQCRSSSR
ENDEKKVEQRGGPGGGEDGREGGEGGGRGFQFGFHFAVDGGK* back to topmRNA from alignment at chr28:1576..5344- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00020.1 ID=NO28G00020.1|Name=NO28G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=3769bp|location=Sequence derived from alignment at chr28:1576..5344- (Nannochloropsis oceanica)
AGAGCCATGCGAGCTGGTGAGCCTGACAGAATTCTGCCATCAGCTGTGCC
ATCGGCCAAAAAGAACAAACTATCGCAGCCATCATCACTCGTTGATACTG
CTGCTTCAGCTGCTACTACTGCTACTGCTACCGAGCCCAAGGTGAGATGG
TGCGAGGAGGACAAGACATTAAGCCATACAGATAGAGGAGCTGAAGCAGG
AGGAGCATGCACCACAGCTGGACATAGAGAAAGAAAACACGGAGGAAGGC
ATCCTTACAGCGTGAGGCCGATGGGGGACTACCTGGCCCACGGAACGGCC
GAGGTGAGGAGAAGGAAAGGGTGGGCGGGGTCATGTGACAGGGAAGGGAA
GAAATGTGCACAAAAAAAAATATTTTCTTGGATACAACTCCCGCTCTTTC
CTCCCGCTCTTTCCTCCGGCTCGTCCTCCCGCTCTTTCCTCCCGCTTTTT
CCTCCCTGTCTCAACAGAAGGTGCGGGGGTTGAGATATGCTTACACCCAC
TCCATCCCTCCACTCTCGCAACCATCTCCCAGGATGTGCGGCACCGCTGC
AACGGCTTGGGCCCCAGCACCTTTGCAACCGTCCCTGACGAAGCCCTGGT
GCACACTTTCCTCTTCCTCTTGGACGCAGCAACGCTCGCCCGTCTCTCCC
GCTGCTCTCGCGCGTGGTATTGCTATGCTCACGCGTACACCGACGTTTGG
AAGAGCCTCGTGCTGACTTCGTTGGCAGAGAGGTGAGACCGTGAGGGGAG
AGGGACAGGGAGGGAGGGAGTGCGAGTAGAGATGATGATGTTGTCGGTAG
GGATGATGAGGTTCTCCGGAAGGGACGTGGAAGACCAAAATAAATGCGTT
CATGCCCTTCTTATATCCGTCGGCCTTTCTCCCTCCTTTCTATCGTTCTC
TCTTTCCCTGCCTTCTTCGCATATCCACTCACCAACCTCTATCTTCTCCT
CACCATAACCTGACACTCACGCCACCTCCACCAGCGAGTGTGGAGAAGGA
AGCGAGGGCGCTCGTCTCGACTACAAGGGCAGCTGGAAGGCGACCTACCT
CTCCCTCCTCCCCTCCCGCCCACTCTCCTTTTCATCCTCCACACATCAGC
GCCAGCAACACATACCTCTACACTCCCTCCCCGCTGTCTATTCGGACGTG
CTGTACGCCCCGTATGGAGCTGTAGCGCGGTTCGAGAAGGTCAAGGCCCG
GCTGCTACGAAGAAGGGAGAAGGACATCTTGCGTCTGAGGAAGCCGACAG
TCGAGGTGAGAAGGGGAGGAAGGGAGCAATTGACGAGTGGGAGGAAGGAA
GGGCGGAAAGAATACAGGAGAGATCGACCTAAAAGAGGAAAAGCTCTGGA
TTAAGTTTGTCCTCATACACACACTCTTGCCTCCCTTACTACCCCCCTCC
CTCCCACCACCCAGGAGTTCCGGGCCCAGTGCGAGGCCCCCAACTTGCCC
TGCGTCTTGGAGGGCGTGATGGAGGGGTGGCCGGCCAGGAGGGAATGGGG
AAGGGAGCGGGGGCTGCTGGACAGGGTCACGGCGGAGGGGAAGGGAGGTA
AAACGGACGGGCCTGGAATCTGGAATGGGGGAAAGAGAGGGAGAGAGGGC
AGGACGGAGAAATTAAAAAGGTATGCCTTCTAGAACTCATACGCGTCACT
TCTCCTATCCCTCCCTCCCTCCTTCCCTTCCTCCCTGCCAGACACCTATA
CCTTGCACGGCAATGGCCTGTCCTTTACCGTGCCCGCCTACTCCACCTAC
GCCCAGGAGCAGCAGGACGACCTGCCCTTGTACATCTTCGATTCCCGCTT
CCTCGACAAGTGCCCGGCCCTCGCTCAAGACTACATTCCCTTCCTTCCCC
CCTACTTCCAGCAGGTAGGGACGTGACGATACCCGGAGAGCAGCGAGGTT
TCTCGCCCTCCCTCCGGCCTTTCTCATCACTTTGCCCTTCTCCTGCCTGT
CCCTCTCACCCTCCCTCTCTCCGTTCCTAACTATTTTGCCTCTGTAGCCC
GGCACCACTCAGGTCAAGATCTCATGCTCCCTCCATTCCTCCTTCCCTCC
TTCCCTCTTTCCATCCATCTCTCCTCCCCTTCGTGACCCTAGGACGCCGA
CTACTTTGCCCTCCTAGGCACGCACAGACCGGACCACCGCTGGTTGATCT
GGGGGCCCAAAGGCTCGGGCTCGACATTCCACAAGGTGCGAGGGGAGGAG
GGAGGGAGGGAAGAAGGGAGATAGGAAGGGAGGGAGGGAGCGAGGGAGGG
AGGAAGAGAAGAAGAGAGGCGGAATATATGCTTTGAGGAGTAATCTGTTG
AAAAGGAAATACATATTCAAGATGAGCTCGATCTTGTCTCCTTGGATGGT
TGCCTTCCATTAAGTGACGTGCTTTCACTTCCTCTTCCCTCCCTCCCTCC
TTTCTTCGGTCCCTTCTTCCCTCCCGCCCAGGACCCTAACGCCACTGCGG
CCTGGAATGCGGTATTGAAGGGTCGGAAGAAGTGGATCCTCTTCCCTCCC
CACATAATCCCGCCCGGCGTCCACCCGTCCGACGATGGTAGGGAGAAGAA
GGAGGGGAGGGAGAGGGGAAGGAAGGGAATGAATAGATGGAGGGAAAGCG
GGAGTGAGGAGAAGGGAGCAGGGGGGCCTCAGATATTAGCCTGGTTTATG
GGGGATGCATGAGAGCGCAATTAACATATGACGACGAGTCTATCATCCTC
AATCCTCCTCCAACAATCCTTATTTCTCTTTCCTCCCTCTCTCCCCCTCT
CCCTCAGGGCTGGACCTGGCCACGCCTGTGACACTGACGGAGTGGGTGGA
GGGCTTTTACTCAGACGCCACGGCGGAGCAAGGATGGAGGGAAAGCGTGG
TGGAGGCCGTGTGCGAGGAAGGGGAGATCATGTTTGTGCCTCGAGGTGAG
GAGAAAGAAGGAGGGAAGGAGGAAGCCAAGGAGATTGAATAGAATCGATG
ACAGGAGCACAACCAAAAAGGGGCTTGAAGACGAAAAGAGCGAGGTGTCC
TCAAGAAGATAAGGCTCGAGTACTTTAACACAGAAAACGATTCCAGCGTC
CCTTCACCCCTCTGATCTCTCCACTTCTCTATACTCTGCCCTCTTTTCTC
GCCGTCTTTCAGGCTGGTGGCATCTGGTGGTCAACACCGAGGAATCTCTG
GCCATAACCCAGAACTACGTCTCCCGAGCCAACCTGCCCCACGTCCTCTC
CTTCCTTGAGGAGGAGACTCACCTGGTGAGTGGCCTGCCTGACGCCGACC
GGCCCTTGCTCTACTCTCGGTTTGTGGAGGTGCTGCGTCGCGTTTGTCCG
AAGGCTTTGGACCAGGCGCAGGAGGAGCGGCTGCAGGCGCGGAGGGTGAG
GGAGACGGAGGAAGAGAAGATGAAGGCGGGATGGACTGGATGCCAAAGGA
AGTGGAGCGCTGTAATGGGCATAACGGACGATAGCTATAGAGAGAAGGAG
GAGGCGGGGCTGGGAGACGCAAAACATCAGCAATGTAGGTCGTCATCGAG
AGAAAATGATGAAAAGAAGGTTGAGCAAAGAGGTGGACCAGGGGGAGGAG
AAGATGGAAGAGAGGGAGGAGAGGGAGGAGGACGTGGTTTCCAATTTGGA
TTCCACTTCGCGGTTGATGGGGGAAAATGACAAACTGTGCACGGCCACTA
CCACCACCGATAATACCAACACCAGCCATTTTTCTTATCTGCGGAATGGG
GGGAACATGGATCAAAATTTTCTATGTCCATTTTGTTGAAGCCAATCAAA
GAAAGCATAAATCTAAGCA back to topCoding sequence (CDS) from alignment at chr28:1576..5344- >NO28G00020.1 ID=NO28G00020.1|Name=NO28G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=1929bp|location=Sequence derived from alignment at chr28:1576..5344- (Nannochloropsis oceanica)
ATGCGAGCTGGTGAGCCTGACAGAATTCTGCCATCAGCTGTGCCATCGGC
CAAAAAGAACAAACTATCGCAGCCATCATCACTCGTTGATACTGCTGCTT
CAGCTGCTACTACTGCTACTGCTACCGAGCCCAAGGTGAGATGGTGCGAG
GAGGACAAGACATTAAGCCATACAGATAGAGGAGCTGAAGCAGGAGGAGC
ATGCACCACAGCTGGACATAGAGAAAGAAAACACGGAGGAAGGCATCCTT
ACAGCGTGAGGCCGATGGGGGACTACCTGGCCCACGGAACGGCCGAGGAT
GTGCGGCACCGCTGCAACGGCTTGGGCCCCAGCACCTTTGCAACCGTCCC
TGACGAAGCCCTGGTGCACACTTTCCTCTTCCTCTTGGACGCAGCAACGC
TCGCCCGTCTCTCCCGCTGCTCTCGCGCGTGGTATTGCTATGCTCACGCG
TACACCGACGTTTGGAAGAGCCTCGTGCTGACTTCGTTGGCAGAGAGCGA
GTGTGGAGAAGGAAGCGAGGGCGCTCGTCTCGACTACAAGGGCAGCTGGA
AGGCGACCTACCTCTCCCTCCTCCCCTCCCGCCCACTCTCCTTTTCATCC
TCCACACATCAGCGCCAGCAACACATACCTCTACACTCCCTCCCCGCTGT
CTATTCGGACGTGCTGTACGCCCCGTATGGAGCTGTAGCGCGGTTCGAGA
AGGTCAAGGCCCGGCTGCTACGAAGAAGGGAGAAGGACATCTTGCGTCTG
AGGAAGCCGACAGTCGAGGAGTTCCGGGCCCAGTGCGAGGCCCCCAACTT
GCCCTGCGTCTTGGAGGGCGTGATGGAGGGGTGGCCGGCCAGGAGGGAAT
GGGGAAGGGAGCGGGGGCTGCTGGACAGGGTCACGGCGGAGGGGAAGGGA
GACACCTATACCTTGCACGGCAATGGCCTGTCCTTTACCGTGCCCGCCTA
CTCCACCTACGCCCAGGAGCAGCAGGACGACCTGCCCTTGTACATCTTCG
ATTCCCGCTTCCTCGACAAGTGCCCGGCCCTCGCTCAAGACTACATTCCC
TTCCTTCCCCCCTACTTCCAGCAGGACGCCGACTACTTTGCCCTCCTAGG
CACGCACAGACCGGACCACCGCTGGTTGATCTGGGGGCCCAAAGGCTCGG
GCTCGACATTCCACAAGGACCCTAACGCCACTGCGGCCTGGAATGCGGTA
TTGAAGGGTCGGAAGAAGTGGATCCTCTTCCCTCCCCACATAATCCCGCC
CGGCGTCCACCCGTCCGACGATGGGCTGGACCTGGCCACGCCTGTGACAC
TGACGGAGTGGGTGGAGGGCTTTTACTCAGACGCCACGGCGGAGCAAGGA
TGGAGGGAAAGCGTGGTGGAGGCCGTGTGCGAGGAAGGGGAGATCATGTT
TGTGCCTCGAGGCTGGTGGCATCTGGTGGTCAACACCGAGGAATCTCTGG
CCATAACCCAGAACTACGTCTCCCGAGCCAACCTGCCCCACGTCCTCTCC
TTCCTTGAGGAGGAGACTCACCTGGTGAGTGGCCTGCCTGACGCCGACCG
GCCCTTGCTCTACTCTCGGTTTGTGGAGGTGCTGCGTCGCGTTTGTCCGA
AGGCTTTGGACCAGGCGCAGGAGGAGCGGCTGCAGGCGCGGAGGGTGAGG
GAGACGGAGGAAGAGAAGATGAAGGCGGGATGGACTGGATGCCAAAGGAA
GTGGAGCGCTGTAATGGGCATAACGGACGATAGCTATAGAGAGAAGGAGG
AGGCGGGGCTGGGAGACGCAAAACATCAGCAATGTAGGTCGTCATCGAGA
GAAAATGATGAAAAGAAGGTTGAGCAAAGAGGTGGACCAGGGGGAGGAGA
AGATGGAAGAGAGGGAGGAGAGGGAGGAGGACGTGGTTTCCAATTTGGAT
TCCACTTCGCGGTTGATGGGGGAAAATGA back to top
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