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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr28 | genome | chr28:1576..5344 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00020.3 vs.
Match: EAY81379.1 (hypothetical protein OsI_36550 [Oryza sativa Indica Group]) HSP 1 Score: 224.6 bits (571), Expect = 6.600e-55 Identity = 147/384 (38.28%), Postives = 203/384 (52.86%), Query Frame = 0
Query: 52 DKTLSHTDRGAEAGGACTTAGHRERKHGGRHPYSVRPMGDYLAHGTAEDVRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHAYTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLS--------LLPSRPLSFSSSTHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRLRKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKGDTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIPFLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAVLKGRKKWILFPPHIIPPGVHPSDDGRE 428
D T H A AG +G R G V+P+G+ L G E G +PD+ L+ L LL A LARLS SRA Y A ++ +W++LVL L G + GSW+ATY++ LLP R L + YSD L+ + A E ++ L R I R R +VE+F ++ E PN P +LEG +E WPA ++W RE L +V+A G + + +S T+ Y YA Q++ PLY+FD++F +K P + +DY +P YF++D F +LG RPDHRW+I GP GSGS+FH DPN+T+AWNAV+KG KKW++FPP ++PPGVHPS DG E
Sbjct: 49 DATSFHLKTSARAGTGGAGSGRR-----GGGGCLVQPLGNLLLLGGGEGGGGNLRDAGLGALRPLPDDVLLDV-LGLLAARDLARLSAASRALYVVA-SHDPLWRALVLDEL----------GGDFAFSGSWRATYIAAASGGRAHLLPPRGLE----------------IRGFYSDYLFQSW-LCANME-MRPEWLHR--DTIERRRGMSVEQFVSEFEEPNRPVLLEGCLESWPALQKWTREHLL--KVSA---GKEFAV--GAVSMTLDRYLQYADNVQEERPLYLFDAKFTEKVPEMGRDYE--VPAYFREDL--FGVLGEERPDHRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGAKKWVMFPPEVVPPGVHPSADGAE 384
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00020.3 ID=NO28G00020.3|Name=NO28G00020.3|organism=Nannochloropsis oceanica|type=mRNA|length=2511bp AGAGCCATGCGAGCTGGTGAGCCTGACAGAATTCTGCCATCAGCTGTGCC ATCGGCCAAAAAGAACAAACTATCGCAGCCATCATCACTCGTTGATACTG CTGCTTCAGCTGCTACTACTGCTACTGCTACCGAGCCCAAGGTGAGATGG TGCGAGGAGGACAAGACATTAAGCCATACAGATAGAGGAGCTGAAGCAGG AGGAGCATGCACCACAGCTGGACATAGAGAAAGAAAACACGGAGGAAGGC ATCCTTACAGCGTGAGGCCGATGGGGGACTACCTGGCCCACGGAACGGCC GAGGATGTGCGGCACCGCTGCAACGGCTTGGGCCCCAGCACCTTTGCAAC CGTCCCTGACGAAGCCCTGGTGCACACTTTCCTCTTCCTCTTGGACGCAG CAACGCTCGCCCGTCTCTCCCGCTGCTCTCGCGCGTGGTATTGCTATGCT CACGCGTACACCGACGTTTGGAAGAGCCTCGTGCTGACTTCGTTGGCAGA GAGCGAGTGTGGAGAAGGAAGCGAGGGCGCTCGTCTCGACTACAAGGGCA GCTGGAAGGCGACCTACCTCTCCCTCCTCCCCTCCCGCCCACTCTCCTTT TCATCCTCCACACATCAGCGCCAGCAACACATACCTCTACACTCCCTCCC CGCTGTCTATTCGGACGTGCTGTACGCCCCGTATGGAGCTGTAGCGCGGT TCGAGAAGGTCAAGGCCCGGCTGCTACGAAGAAGGGAGAAGGACATCTTG CGTCTGAGGAAGCCGACAGTCGAGGAGTTCCGGGCCCAGTGCGAGGCCCC CAACTTGCCCTGCGTCTTGGAGGGCGTGATGGAGGGGTGGCCGGCCAGGA GGGAATGGGGAAGGGAGCGGGGGCTGCTGGACAGGGTCACGGCGGAGGGG AAGGGAGACACCTATACCTTGCACGGCAATGGCCTGTCCTTTACCGTGCC CGCCTACTCCACCTACGCCCAGGAGCAGCAGGACGACCTGCCCTTGTACA TCTTCGATTCCCGCTTCCTCGACAAGTGCCCGGCCCTCGCTCAAGACTAC ATTCCCTTCCTTCCCCCCTACTTCCAGCAGGACGCCGACTACTTTGCCCT CCTAGGCACGCACAGACCGGACCACCGCTGGTTGATCTGGGGGCCCAAAG GCTCGGGCTCGACATTCCACAAGGACCCTAACGCCACTGCGGCCTGGAAT GCGGTATTGAAGGGTCGGAAGAAGTGGATCCTCTTCCCTCCCCACATAAT CCCGCCCGGCGTCCACCCGTCCGACGATGGTAGGGAGAAGAAGGAGGGGA GGGAGAGGGGAAGGAAGGGAATGAATAGATGGAGGGAAAGCGGGAGTGAG GAGAAGGGAGCAGGGGGGCCTCAGATATTAGCCTGGTTTATGGGGGATGC ATGAGAGCGCAATTAACATATGACGACGAGTCTATCATCCTCAATCCTCC TCCAACAATCCTTATTTCTCTTTCCTCCCTCTCTCCCCCTCTCCCTCAGG GCTGGACCTGGCCACGCCTGTGACACTGACGGAGTGGGTGGAGGGCTTTT ACTCAGACGCCACGGCGGAGCAAGGATGGAGGGAAAGCGTGGTGGAGGCC GTGTGCGAGGAAGGGGAGATCATGTTTGTGCCTCGAGGTGAGGAGAAAGA AGGAGGGAAGGAGGAAGCCAAGGAGATTGAATAGAATCGATGACAGGAGC ACAACCAAAAAGGGGCTTGAAGACGAAAAGAGCGAGGTGTCCTCAAGAAG ATAAGGCTCGAGTACTTTAACACAGAAAACGATTCCAGCGTCCCTTCACC CCTCTGATCTCTCCACTTCTCTATACTCTGCCCTCTTTTCTCGCCGTCTT TCAGGCTGGTGGCATCTGGTGGTCAACACCGAGGAATCTCTGGCCATAAC CCAGAACTACGTCTCCCGAGCCAACCTGCCCCACGTCCTCTCCTTCCTTG AGGAGGAGACTCACCTGGTGAGTGGCCTGCCTGACGCCGACCGGCCCTTG CTCTACTCTCGGTTTGTGGAGGTGCTGCGTCGCGTTTGTCCGAAGGCTTT GGACCAGGCGCAGGAGGAGCGGCTGCAGGCGCGGAGGGTGAGGGAGACGG AGGAAGAGAAGATGAAGGCGGGATGGACTGGATGCCAAAGGAAGTGGAGC GCTGTAATGGGCATAACGGACGATAGCTATAGAGAGAAGGAGGAGGCGGG GCTGGGAGACGCAAAACATCAGCAATGTAGGTCGTCATCGAGAGAAAATG ATGAAAAGAAGGTTGAGCAAAGAGGTGGACCAGGGGGAGGAGAAGATGGA AGAGAGGGAGGAGAGGGAGGAGGACGTGGTTTCCAATTTGGATTCCACTT CGCGGTTGATGGGGGAAAATGACAAACTGTGCACGGCCACTACCACCACC GATAATACCAACACCAGCCATTTTTCTTATCTGCGGAATGGGGGGAACAT GGATCAAAATTTTCTATGTCCATTTTGTTGAAGCCAATCAAAGAAAGCAT AAATCTAAGCA back to topprotein sequence of NO28G00020.3 >NO28G00020.3-protein ID=NO28G00020.3-protein|Name=NO28G00020.3|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp MRAGEPDRILPSAVPSAKKNKLSQPSSLVDTAASAATTATATEPKVRWCE EDKTLSHTDRGAEAGGACTTAGHRERKHGGRHPYSVRPMGDYLAHGTAED VRHRCNGLGPSTFATVPDEALVHTFLFLLDAATLARLSRCSRAWYCYAHA YTDVWKSLVLTSLAESECGEGSEGARLDYKGSWKATYLSLLPSRPLSFSS STHQRQQHIPLHSLPAVYSDVLYAPYGAVARFEKVKARLLRRREKDILRL RKPTVEEFRAQCEAPNLPCVLEGVMEGWPARREWGRERGLLDRVTAEGKG DTYTLHGNGLSFTVPAYSTYAQEQQDDLPLYIFDSRFLDKCPALAQDYIP FLPPYFQQDADYFALLGTHRPDHRWLIWGPKGSGSTFHKDPNATAAWNAV LKGRKKWILFPPHIIPPGVHPSDDGREKKEGRERGRKGMNRWRESGSEEK GAGGPQILAWFMGDA* back to topmRNA from alignment at chr28:1576..5344- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00020.3 ID=NO28G00020.3|Name=NO28G00020.3|organism=Nannochloropsis oceanica|type=mRNA|length=3769bp|location=Sequence derived from alignment at chr28:1576..5344- (Nannochloropsis oceanica) AGAGCCATGCGAGCTGGTGAGCCTGACAGAATTCTGCCATCAGCTGTGCC
ATCGGCCAAAAAGAACAAACTATCGCAGCCATCATCACTCGTTGATACTG
CTGCTTCAGCTGCTACTACTGCTACTGCTACCGAGCCCAAGGTGAGATGG
TGCGAGGAGGACAAGACATTAAGCCATACAGATAGAGGAGCTGAAGCAGG
AGGAGCATGCACCACAGCTGGACATAGAGAAAGAAAACACGGAGGAAGGC
ATCCTTACAGCGTGAGGCCGATGGGGGACTACCTGGCCCACGGAACGGCC
GAGGTGAGGAGAAGGAAAGGGTGGGCGGGGTCATGTGACAGGGAAGGGAA
GAAATGTGCACAAAAAAAAATATTTTCTTGGATACAACTCCCGCTCTTTC
CTCCCGCTCTTTCCTCCGGCTCGTCCTCCCGCTCTTTCCTCCCGCTTTTT
CCTCCCTGTCTCAACAGAAGGTGCGGGGGTTGAGATATGCTTACACCCAC
TCCATCCCTCCACTCTCGCAACCATCTCCCAGGATGTGCGGCACCGCTGC
AACGGCTTGGGCCCCAGCACCTTTGCAACCGTCCCTGACGAAGCCCTGGT
GCACACTTTCCTCTTCCTCTTGGACGCAGCAACGCTCGCCCGTCTCTCCC
GCTGCTCTCGCGCGTGGTATTGCTATGCTCACGCGTACACCGACGTTTGG
AAGAGCCTCGTGCTGACTTCGTTGGCAGAGAGGTGAGACCGTGAGGGGAG
AGGGACAGGGAGGGAGGGAGTGCGAGTAGAGATGATGATGTTGTCGGTAG
GGATGATGAGGTTCTCCGGAAGGGACGTGGAAGACCAAAATAAATGCGTT
CATGCCCTTCTTATATCCGTCGGCCTTTCTCCCTCCTTTCTATCGTTCTC
TCTTTCCCTGCCTTCTTCGCATATCCACTCACCAACCTCTATCTTCTCCT
CACCATAACCTGACACTCACGCCACCTCCACCAGCGAGTGTGGAGAAGGA
AGCGAGGGCGCTCGTCTCGACTACAAGGGCAGCTGGAAGGCGACCTACCT
CTCCCTCCTCCCCTCCCGCCCACTCTCCTTTTCATCCTCCACACATCAGC
GCCAGCAACACATACCTCTACACTCCCTCCCCGCTGTCTATTCGGACGTG
CTGTACGCCCCGTATGGAGCTGTAGCGCGGTTCGAGAAGGTCAAGGCCCG
GCTGCTACGAAGAAGGGAGAAGGACATCTTGCGTCTGAGGAAGCCGACAG
TCGAGGTGAGAAGGGGAGGAAGGGAGCAATTGACGAGTGGGAGGAAGGAA
GGGCGGAAAGAATACAGGAGAGATCGACCTAAAAGAGGAAAAGCTCTGGA
TTAAGTTTGTCCTCATACACACACTCTTGCCTCCCTTACTACCCCCCTCC
CTCCCACCACCCAGGAGTTCCGGGCCCAGTGCGAGGCCCCCAACTTGCCC
TGCGTCTTGGAGGGCGTGATGGAGGGGTGGCCGGCCAGGAGGGAATGGGG
AAGGGAGCGGGGGCTGCTGGACAGGGTCACGGCGGAGGGGAAGGGAGGTA
AAACGGACGGGCCTGGAATCTGGAATGGGGGAAAGAGAGGGAGAGAGGGC
AGGACGGAGAAATTAAAAAGGTATGCCTTCTAGAACTCATACGCGTCACT
TCTCCTATCCCTCCCTCCCTCCTTCCCTTCCTCCCTGCCAGACACCTATA
CCTTGCACGGCAATGGCCTGTCCTTTACCGTGCCCGCCTACTCCACCTAC
GCCCAGGAGCAGCAGGACGACCTGCCCTTGTACATCTTCGATTCCCGCTT
CCTCGACAAGTGCCCGGCCCTCGCTCAAGACTACATTCCCTTCCTTCCCC
CCTACTTCCAGCAGGTAGGGACGTGACGATACCCGGAGAGCAGCGAGGTT
TCTCGCCCTCCCTCCGGCCTTTCTCATCACTTTGCCCTTCTCCTGCCTGT
CCCTCTCACCCTCCCTCTCTCCGTTCCTAACTATTTTGCCTCTGTAGCCC
GGCACCACTCAGGTCAAGATCTCATGCTCCCTCCATTCCTCCTTCCCTCC
TTCCCTCTTTCCATCCATCTCTCCTCCCCTTCGTGACCCTAGGACGCCGA
CTACTTTGCCCTCCTAGGCACGCACAGACCGGACCACCGCTGGTTGATCT
GGGGGCCCAAAGGCTCGGGCTCGACATTCCACAAGGTGCGAGGGGAGGAG
GGAGGGAGGGAAGAAGGGAGATAGGAAGGGAGGGAGGGAGCGAGGGAGGG
AGGAAGAGAAGAAGAGAGGCGGAATATATGCTTTGAGGAGTAATCTGTTG
AAAAGGAAATACATATTCAAGATGAGCTCGATCTTGTCTCCTTGGATGGT
TGCCTTCCATTAAGTGACGTGCTTTCACTTCCTCTTCCCTCCCTCCCTCC
TTTCTTCGGTCCCTTCTTCCCTCCCGCCCAGGACCCTAACGCCACTGCGG
CCTGGAATGCGGTATTGAAGGGTCGGAAGAAGTGGATCCTCTTCCCTCCC
CACATAATCCCGCCCGGCGTCCACCCGTCCGACGATGGTAGGGAGAAGAA
GGAGGGGAGGGAGAGGGGAAGGAAGGGAATGAATAGATGGAGGGAAAGCG
GGAGTGAGGAGAAGGGAGCAGGGGGGCCTCAGATATTAGCCTGGTTTATG
GGGGATGCATGAGAGCGCAATTAACATATGACGACGAGTCTATCATCCTC
AATCCTCCTCCAACAATCCTTATTTCTCTTTCCTCCCTCTCTCCCCCTCT
CCCTCAGGGCTGGACCTGGCCACGCCTGTGACACTGACGGAGTGGGTGGA
GGGCTTTTACTCAGACGCCACGGCGGAGCAAGGATGGAGGGAAAGCGTGG
TGGAGGCCGTGTGCGAGGAAGGGGAGATCATGTTTGTGCCTCGAGGTGAG
GAGAAAGAAGGAGGGAAGGAGGAAGCCAAGGAGATTGAATAGAATCGATG
ACAGGAGCACAACCAAAAAGGGGCTTGAAGACGAAAAGAGCGAGGTGTCC
TCAAGAAGATAAGGCTCGAGTACTTTAACACAGAAAACGATTCCAGCGTC
CCTTCACCCCTCTGATCTCTCCACTTCTCTATACTCTGCCCTCTTTTCTC
GCCGTCTTTCAGGCTGGTGGCATCTGGTGGTCAACACCGAGGAATCTCTG
GCCATAACCCAGAACTACGTCTCCCGAGCCAACCTGCCCCACGTCCTCTC
CTTCCTTGAGGAGGAGACTCACCTGGTGAGTGGCCTGCCTGACGCCGACC
GGCCCTTGCTCTACTCTCGGTTTGTGGAGGTGCTGCGTCGCGTTTGTCCG
AAGGCTTTGGACCAGGCGCAGGAGGAGCGGCTGCAGGCGCGGAGGGTGAG
GGAGACGGAGGAAGAGAAGATGAAGGCGGGATGGACTGGATGCCAAAGGA
AGTGGAGCGCTGTAATGGGCATAACGGACGATAGCTATAGAGAGAAGGAG
GAGGCGGGGCTGGGAGACGCAAAACATCAGCAATGTAGGTCGTCATCGAG
AGAAAATGATGAAAAGAAGGTTGAGCAAAGAGGTGGACCAGGGGGAGGAG
AAGATGGAAGAGAGGGAGGAGAGGGAGGAGGACGTGGTTTCCAATTTGGA
TTCCACTTCGCGGTTGATGGGGGAAAATGACAAACTGTGCACGGCCACTA
CCACCACCGATAATACCAACACCAGCCATTTTTCTTATCTGCGGAATGGG
GGGAACATGGATCAAAATTTTCTATGTCCATTTTGTTGAAGCCAATCAAA
GAAAGCATAAATCTAAGCA back to topCoding sequence (CDS) from alignment at chr28:1576..5344- >NO28G00020.3 ID=NO28G00020.3|Name=NO28G00020.3|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr28:1576..5344- (Nannochloropsis oceanica) ATGCGAGCTGGTGAGCCTGACAGAATTCTGCCATCAGCTGTGCCATCGGC CAAAAAGAACAAACTATCGCAGCCATCATCACTCGTTGATACTGCTGCTT CAGCTGCTACTACTGCTACTGCTACCGAGCCCAAGGTGAGATGGTGCGAG GAGGACAAGACATTAAGCCATACAGATAGAGGAGCTGAAGCAGGAGGAGC ATGCACCACAGCTGGACATAGAGAAAGAAAACACGGAGGAAGGCATCCTT ACAGCGTGAGGCCGATGGGGGACTACCTGGCCCACGGAACGGCCGAGGAT GTGCGGCACCGCTGCAACGGCTTGGGCCCCAGCACCTTTGCAACCGTCCC TGACGAAGCCCTGGTGCACACTTTCCTCTTCCTCTTGGACGCAGCAACGC TCGCCCGTCTCTCCCGCTGCTCTCGCGCGTGGTATTGCTATGCTCACGCG TACACCGACGTTTGGAAGAGCCTCGTGCTGACTTCGTTGGCAGAGAGCGA GTGTGGAGAAGGAAGCGAGGGCGCTCGTCTCGACTACAAGGGCAGCTGGA AGGCGACCTACCTCTCCCTCCTCCCCTCCCGCCCACTCTCCTTTTCATCC TCCACACATCAGCGCCAGCAACACATACCTCTACACTCCCTCCCCGCTGT CTATTCGGACGTGCTGTACGCCCCGTATGGAGCTGTAGCGCGGTTCGAGA AGGTCAAGGCCCGGCTGCTACGAAGAAGGGAGAAGGACATCTTGCGTCTG AGGAAGCCGACAGTCGAGGAGTTCCGGGCCCAGTGCGAGGCCCCCAACTT GCCCTGCGTCTTGGAGGGCGTGATGGAGGGGTGGCCGGCCAGGAGGGAAT GGGGAAGGGAGCGGGGGCTGCTGGACAGGGTCACGGCGGAGGGGAAGGGA GACACCTATACCTTGCACGGCAATGGCCTGTCCTTTACCGTGCCCGCCTA CTCCACCTACGCCCAGGAGCAGCAGGACGACCTGCCCTTGTACATCTTCG ATTCCCGCTTCCTCGACAAGTGCCCGGCCCTCGCTCAAGACTACATTCCC TTCCTTCCCCCCTACTTCCAGCAGGACGCCGACTACTTTGCCCTCCTAGG CACGCACAGACCGGACCACCGCTGGTTGATCTGGGGGCCCAAAGGCTCGG GCTCGACATTCCACAAGGACCCTAACGCCACTGCGGCCTGGAATGCGGTA TTGAAGGGTCGGAAGAAGTGGATCCTCTTCCCTCCCCACATAATCCCGCC CGGCGTCCACCCGTCCGACGATGGTAGGGAGAAGAAGGAGGGGAGGGAGA GGGGAAGGAAGGGAATGAATAGATGGAGGGAAAGCGGGAGTGAGGAGAAG GGAGCAGGGGGGCCTCAGATATTAGCCTGGTTTATGGGGGATGCATGA back to top
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