NO27G01560, NO27G01560 (gene) Nannochloropsis oceanica

Overview
NameNO27G01560
Unique NameNO27G01560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1848
Alignment locationchr27:516359..518206 -

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Properties
Property NameValue
DescriptionrRNA-processing protein FCF1 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:516359..518206 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN_domain-like
IPR006984Fcf1/Utp23
IPR002716PIN_dom
Homology
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: EJK46940.1 (hypothetical protein THAOC_34371, partial [Thalassiosira oceanica])

HSP 1 Score: 128.6 bits (322), Expect = 2.000e-26
Identity = 64/101 (63.37%), Postives = 81/101 (80.20%), Query Frame = 0 
Query:   53 AMGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVA-KSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            +MGKAKKTRK+AV KK ISPKD R+K N ++ + + EA A K   R+VE   + +FFQYNT LGPP+ VLVDTNFINFSI+NK+++ ++MMDCLLAKCIPC
Sbjct:   38 SMGKAKKTRKFAVAKKMISPKDARIKSNQKEQQAKREANAKKDEPRQVEQANSALFFQYNTQLGPPYHVLVDTNFINFSIRNKMDIVRSMMDCLLAKCIPC 138
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: EXX75982.1 (Fcf1p [Rhizophagus irregularis DAOM 197198w] >GBC13115.1 rRNA processing protein Fcf1 (predicted) [Rhizophagus irregularis DAOM 181602] >PKC09152.1 Fcf1-domain-containing protein [Rhizophagus irregularis] >PKC65133.1 Fcf1-domain-containing protein [Rhizophagus irregularis] >PKY20124.1 Fcf1-domain-containing protein [Rhizophagus irregularis] >PKY45014.1 Fcf1-domain-containing protein [Rhizophagus irregularis] >POG82622.1 Fcf1-domain-containing protein [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 126.7 bits (317), Expect = 7.400e-26
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            MGKAKKTRK+A +K+ I+P D RLK   EK KKR E   K   R V  V + +FF+YNT+LGPP+RV+VDTNFINFSI+NKLE+ ++MMDCL AKCIPC
Sbjct:    1 MGKAKKTRKFAEVKRLINPADSRLKSIQEKQKKRQEEKTKESVRNVPQVASSLFFRYNTALGPPYRVMVDTNFINFSIQNKLELVRSMMDCLYAKCIPC 99
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: KXS21598.1 (Fcf1-domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 126.7 bits (317), Expect = 7.400e-26
Identity = 61/99 (61.62%), Postives = 76/99 (76.77%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            MGKAKKTRK+A +K+ ISPKD RLK N +K K       +++ R V+ V + MFF+YNTSL PP+ VL+DTNFINFSI NKL++ KAMMDCL AKC+PC
Sbjct:    1 MGKAKKTRKFAEVKRMISPKDARLKHNQDKKKAEEAKKTQAVVRHVQQVASSMFFKYNTSLTPPYNVLIDTNFINFSISNKLDIIKAMMDCLFAKCVPC 99
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: SAM00284.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 126.7 bits (317), Expect = 7.400e-26
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            MGKA+ TRK+A +K+ IS KD RLKDN EK KK+ E   K++ R V  V + MFFQYN +LGPP+ +LVDTNFINFSI+NKLE+ K+MMDCL AK IPC
Sbjct:    1 MGKARTTRKFAQVKRMISTKDARLKDNKEKLKKKEEDKEKAIVRNVPQVASSMFFQYNAALGPPYHILVDTNFINFSIQNKLELVKSMMDCLYAKSIPC 99
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: XP_002293171.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89632.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 125.9 bits (315), Expect = 1.300e-25
Identity = 62/100 (62.00%), Postives = 78/100 (78.00%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKDN-IEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            MGKAKKTRK+AV KK ISPKD R+K N I  A K+ E+  K   R V+   + +FFQYNT LGPP+ +L+DTNFINFSI+NK+++ ++MMDCLLAKCIPC
Sbjct:    1 MGKAKKTRKFAVAKKIISPKDARVKSNQIAAAAKKEESKEKEKPRHVDQAISALFFQYNTQLGPPYHILIDTNFINFSIRNKMDIVRSMMDCLLAKCIPC 100
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: ORY08435.1 (Fcf1-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 125.6 bits (314), Expect = 1.700e-25
Identity = 60/99 (60.61%), Postives = 77/99 (77.78%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            MGKAKKTR++ ++K+ ++PKD RLK+N EK K       KSL   +  V + +FF+YNT+LGPP+ VLVDTNFINFSI+NKLE+ K+MMDCL AKCIPC
Sbjct:    1 MGKAKKTRQFGLVKRMLNPKDARLKENQEKLKXXXXXXXKSLVTHIPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVKSMMDCLYAKCIPC 99
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: XP_008615447.1 (rRNA-processing protein FCF1 [Saprolegnia diclina VS20] >XP_012194956.1 rRNA-processing protein FCF1 [Saprolegnia parasitica CBS 223.65] >EQC31008.1 rRNA-processing protein FCF1 [Saprolegnia diclina VS20] >KDO34072.1 rRNA-processing protein FCF1 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 123.6 bits (309), Expect = 6.300e-25
Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRA-EAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            MGK KKTRK+A +K+ ISPKD RLK   +  +K+A +A  +   R+++ +P+ MFF+YN  LGPP+ +LVDTNFINFSIKNKLE+  +MMDCLLAKCIPC
Sbjct:    1 MGKDKKTRKFAAVKRMISPKDTRLKSVQKDVEKKALKAKERDAPRQIDQIPSNMFFKYNADLGPPYNILVDTNFINFSIKNKLELVSSMMDCLLAKCIPC 100
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: XP_008865967.1 (hypothetical protein H310_03763 [Aphanomyces invadans] >ETW06190.1 hypothetical protein H310_03763 [Aphanomyces invadans])

HSP 1 Score: 122.1 bits (305), Expect = 1.800e-24
Identity = 59/100 (59.00%), Postives = 74/100 (74.00%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKD-NIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            M K KK RK+A +K+ ISPKD R+K   +  AKK  +   K   R+++ +P+ +FF+YN  LGPP+ +LVDTNFINFSIKNKLEV  AMMDCLLAKCIPC
Sbjct:    1 MAKEKKVRKFAAVKRMISPKDTRIKSVQVAVAKKELKKKEKEAPRQIDQIPSNLFFKYNADLGPPYNILVDTNFINFSIKNKLEVVSAMMDCLLAKCIPC 100
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: OQR87676.1 (rRNA-processing protein FCF1 [Achlya hypogyna])

HSP 1 Score: 122.1 bits (305), Expect = 1.800e-24
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKD-NIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
            MGK KKTRK+A +K+ ISPKD R+K    E  KK  +   K   R+++ +P+ MFF+YN  LGPP+ +LVDTNFINFSIKNKLE+  +MMDCLLAKCIPC
Sbjct:    1 MGKDKKTRKFAAVKRMISPKDTRIKTVQKEVEKKSLKLKEKDAPRQIDQIPSNMFFKYNADLGPPYNILVDTNFINFSIKNKLELVSSMMDCLLAKCIPC 100
[Close]
BLAST of NO27G01560 vs. NCBI_GenBank
Match: OWZ42788.1 (U3 small nucleolar RNA-associated protein 24 [Cryptococcus neoformans var. grubii c45])

HSP 1 Score: 121.7 bits (304), Expect = 2.400e-24
Identity = 59/99 (59.60%), Postives = 78/99 (78.79%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVEA-VPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIP 152
            MGKA KTRK+A +K+ I P DPRLK+N+EKA K+AE    +  R++ A V + +F  +NT LGPP+R+LVDTNFINFSI+NK+E+ + MMDCL+AKCIP
Sbjct:    1 MGKATKTRKFAAVKRMIKPSDPRLKENVEKAAKKAEKEKAAEERKIVAQVSSSLFLSHNTDLGPPYRILVDTNFINFSIQNKIELVQGMMDCLMAKCIP 99
The following BLAST results are available for this feature:
BLAST of NO27G01560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EJK46940.12.000e-2663.37hypothetical protein THAOC_34371, partial [Thalass... [more]
EXX75982.17.400e-2663.64Fcf1p [Rhizophagus irregularis DAOM 197198w] >GBC1... [more]
KXS21598.17.400e-2661.62Fcf1-domain-containing protein [Gonapodya prolifer... [more]
SAM00284.17.400e-2663.64hypothetical protein [Absidia glauca][more]
XP_002293171.11.300e-2562.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
ORY08435.11.700e-2560.61Fcf1-domain-containing protein [Basidiobolus meris... [more]
XP_008615447.16.300e-2560.00rRNA-processing protein FCF1 [Saprolegnia diclina ... [more]
XP_008865967.11.800e-2459.00hypothetical protein H310_03763 [Aphanomyces invad... [more]
OQR87676.11.800e-2460.00rRNA-processing protein FCF1 [Achlya hypogyna][more]
OWZ42788.12.400e-2459.60U3 small nucleolar RNA-associated protein 24 [Cryp... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR103ngnoR103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633716gene_9925Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01560.3NO27G01560.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01560.2NO27G01560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO27G01560.1NO27G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01560.3NO27G01560.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01560.2NO27G01560.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO27G01560.1NO27G01560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01560 ID=NO27G01560|Name=NO27G01560|organism=Nannochloropsis oceanica|type=gene|length=1848bp
TGCCACCTGCCCATGTCTTAGCCTCCTCTCCGCCTCGCTTCGTTCGTACA
GCAAGCATACTAGGATAGTGATCATTGCCGTACAAACACAGGAGTTGTTG
CACACCCGTGCGCATGACTGGGCCTTCACACACTGTTACCCTGGAGGATA
TCGTAGCAACTGCCCGTGTCGACAACACCGCGCAAGCAACTAATGGACAA
CCCTCACCCTGCCTCCCCGTCTCCCTCCACAGCACACGACTACCACCACC
ACCACCACCATTACGATACGCCATGGGCAAGGCCAAGAAAACACGCAAGT
ACGCCGTAATGAAGAAGCAGATCTCACCCAAAGACCCCCGGCTgtacgta
ccaaggagggaggggaggaggggaagagagaggggtggggaggtcaagtc
ctgggttcatacctcttcttcgtcaatcaatcaatcagtcgatcagatcc
cttgtgtacgttaatagtctaggatcatttggataggagttaaatttgag
gactgcgacaaaaggaagcagagcatgatccaattgtggctcttcttgtc
gtttaacagcctccccctcccgtccccctcccccactatcctctcctcgc
ctcctcagCAAGGACAACATCGAGAAGGCCAAGAAGCGGGCCGAGGCGGT
CGCAAAATCACTTACGCGTGAAGTgtaagtaccaccgatcgaaggataga
gggatggtaggagatacgctgcgtagagtcagatactcatctccctccct
ccctccctttcccccctcttcctcagCGAGGCCGTCCCAACGGGCATGTT
TTTTCAGTACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATA
CCAATTTCATAAATTTCTCGATTAAGAACAAGCTCGAAGTATACAAAGCC
ATGATGGACTGCCTTCTCGCCAAGTGCATTCCCTGTAAGTGCCCTCCCTC
CCTCCCTCTCTCCCTCCCTTCCTCTCTGCCTCCTTCCCTCGTTCCCTCCT
CCTCAAGGTTGTTCACGCGCGTCGTGATGAGCTTGTGAACCTACCCCTCA
TCCTGTCTATTTCCCTATACTCCACAGCACTCATCCCTTCCCTCCCTGAC
ATCCACGCTATACTTATCTTTTCCTCTTTCCCTCCCTCCCCCCACTTCTC
TCTAAGGTATTTCGGACTGTGTCATGGCCGAACTGGAGAAGTTGGGATCC
AAATACACCCTGGCCTTGAGGTAGGGAGGGATGGAGGGAAGGCAGGAGGG
AGGGAGGGGGAGAGGACGGAGAAAACCTCTCTCATTCCTGATCCCTCCAA
CATTGACCGACACACTCCTCCATTCCTCCTTCCCGTCCCCCTCCTCCCTT
CCTCCCTCCTTCCTTAAGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTC
CATGCTCCCATTCAGGGACGTACGCCGATGACTGCATCGTGGAGAGAGTG
ACGCAGgtacggttcctccctccctccctccctccctccctccctccctc
ccttcctacttctcgcctcaacctgtctcctttcctaaagcttgtgagca
tgcggggaagcgtccaaaaagtaacgagaagaaaatcttatcccaaatcc
tctctccctcccttcctccctccctccctccacattctcatacctctctc
cctctctctctcccttcctcccttcctccttccccctccctgcctccctg
cagCACCGTTGCTTCATCGTCGCGACCTGTGACAAGGACCTCAAGCGACG
CCTGCGGAAGATACCCGGAGTTCCCATCATGTACGTAGCGAATCGCAAGT
ACAGCATTGAGCGGATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAGG
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protein sequence of NO27G01560.3

>NO27G01560.3-protein ID=NO27G01560.3-protein|Name=NO27G01560.3|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MTGPSHTVTLEDIVATARVDNTAQATNGQPSPCLPVSLHSTRLPPPPPPL
RYAMGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVE
AVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCI
PCKCPPSLPLSLPSSLPPSLVPSSSRLFTRVVMSL*
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protein sequence of NO27G01560.2

>NO27G01560.2-protein ID=NO27G01560.2-protein|Name=NO27G01560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MTGPSHTVTLEDIVATARVDNTAQATNGQPSPCLPVSLHSTRLPPPPPPL
RYAMGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVE
AVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCI
PCKCPPSLPLSLPSSLPPSLVPSSSRLFTRVVMSL*
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protein sequence of NO27G01560.1

>NO27G01560.1-protein ID=NO27G01560.1-protein|Name=NO27G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MTGPSHTVTLEDIVATARVDNTAQATNGQPSPCLPVSLHSTRLPPPPPPL
RYAMGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVE
AVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCI
PCISDCVMAELEKLGSKYTLALRLAKDPRFERLPCSHSGTYADDCIVERV
TQHRCFIVATCDKDLKRRLRKIPGVPIMYVANRKYSIERMPEAFGAPRL*
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Synonyms
Publications