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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr27 | genome | chr27:516359..518206 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO27G01560.3 vs.
Match: ORY08435.1 (Fcf1-domain-containing protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 131.0 bits (328), Expect = 3.900e-27 Identity = 62/99 (62.63%), Postives = 80/99 (80.81%), Query Frame = 0
Query: 54 MGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPC 153
MGKAKKTR++ ++K+ ++PKD RLK+N EK KK+ E KSL + V + +FF+YNT+LGPP+ VLVDTNFINFSI+NKLE+ K+MMDCL AKCIPC
Sbjct: 1 MGKAKKTRQFGLVKRMLNPKDARLKENQEKLKKKEEEKEKSLVTHIPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVKSMMDCLYAKCIPC 99
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO27G01560.3 ID=NO27G01560.3|Name=NO27G01560.3|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
TGCCACCTGCCCATGTCTTAGCCTCCTCTCCGCCTCGCTTCGTTCGTACA
GCAAGCATACTAGGATAGTGATCATTGCCGTACAAACACAGGAGTTGTTG
CACACCCGTGCGCATGACTGGGCCTTCACACACTGTTACCCTGGAGGATA
TCGTAGCAACTGCCCGTGTCGACAACACCGCGCAAGCAACTAATGGACAA
CCCTCACCCTGCCTCCCCGTCTCCCTCCACAGCACACGACTACCACCACC
ACCACCACCATTACGATACGCCATGGGCAAGGCCAAGAAAACACGCAAGT
ACGCCGTAATGAAGAAGCAGATCTCACCCAAAGACCCCCGGCTCAAGGAC
AACATCGAGAAGGCCAAGAAGCGGGCCGAGGCGGTCGCAAAATCACTTAC
GCGTGAAGTCGAGGCCGTCCCAACGGGCATGTTTTTTCAGTACAACACTT
CTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATACCAATTTCATAAATTTC
TCGATTAAGAACAAGCTCGAAGTATACAAAGCCATGATGGACTGCCTTCT
CGCCAAGTGCATTCCCTGTAAGTGCCCTCCCTCCCTCCCTCTCTCCCTCC
CTTCCTCTCTGCCTCCTTCCCTCGTTCCCTCCTCCTCAAGGTTGTTCACG
CGCGTCGTGATGAGCTTGTGAACCTACCCCTCATCCTGTCTATTTCCCTA
TACTCCACAGCACTCATCCCTTCCCTCCCTGACATCCACGCTATACTTAT
CTTTTCCTCTTTCCCTCCCTCCCCCCACTTCTCTCTAAGGTATTTCGGAC
TGTGTCATGGCCGAACTGGAGAAGTTGGGATCCAAATACACCCTGGCCTT
GAGGTAGGGAGGGATGGAGGGAAGGCAGGAGGGAGGGAGGGGGAGAGGAC
GGAGAAAACCTCTCTCATTCCTGATCCCTCCAACATTGACCGACACACTC
CTCCATTCCTCCTTCCCGTCCCCCTCCTCCCTTCCTCCCTCCTTCCTTAA
GACTTGCCAAAGACCCTCGTTTCGAGCGTCTTCCATGCTCCCATTCAGGG
ACGTACGCCGATGACTGCATCGTGGAGAGAGTGACGCAGCACCGTTGCTT
CATCGTCGCGACCTGTGACAAGGACCTCAAGCGACGCCTGCGGAAGATAC
CCGGAGTTCCCATCATGTACGTAGCGAATCGCAAGTACAGCATTGAGCGG
ATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAGG back to topprotein sequence of NO27G01560.3 >NO27G01560.3-protein ID=NO27G01560.3-protein|Name=NO27G01560.3|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MTGPSHTVTLEDIVATARVDNTAQATNGQPSPCLPVSLHSTRLPPPPPPL
RYAMGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVE
AVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCI
PCKCPPSLPLSLPSSLPPSLVPSSSRLFTRVVMSL* back to topmRNA from alignment at chr27:516359..518206- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO27G01560.3 ID=NO27G01560.3|Name=NO27G01560.3|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp|location=Sequence derived from alignment at chr27:516359..518206- (Nannochloropsis oceanica)
TGCCACCTGCCCATGTCTTAGCCTCCTCTCCGCCTCGCTTCGTTCGTACA
GCAAGCATACTAGGATAGTGATCATTGCCGTACAAACACAGGAGTTGTTG
CACACCCGTGCGCATGACTGGGCCTTCACACACTGTTACCCTGGAGGATA
TCGTAGCAACTGCCCGTGTCGACAACACCGCGCAAGCAACTAATGGACAA
CCCTCACCCTGCCTCCCCGTCTCCCTCCACAGCACACGACTACCACCACC
ACCACCACCATTACGATACGCCATGGGCAAGGCCAAGAAAACACGCAAGT
ACGCCGTAATGAAGAAGCAGATCTCACCCAAAGACCCCCGGCTGTACGTA
CCAAGGAGGGAGGGGAGGAGGGGAAGAGAGAGGGGTGGGGAGGTCAAGTC
CTGGGTTCATACCTCTTCTTCGTCAATCAATCAATCAGTCGATCAGATCC
CTTGTGTACGTTAATAGTCTAGGATCATTTGGATAGGAGTTAAATTTGAG
GACTGCGACAAAAGGAAGCAGAGCATGATCCAATTGTGGCTCTTCTTGTC
GTTTAACAGCCTCCCCCTCCCGTCCCCCTCCCCCACTATCCTCTCCTCGC
CTCCTCAGCAAGGACAACATCGAGAAGGCCAAGAAGCGGGCCGAGGCGGT
CGCAAAATCACTTACGCGTGAAGTGTAAGTACCACCGATCGAAGGATAGA
GGGATGGTAGGAGATACGCTGCGTAGAGTCAGATACTCATCTCCCTCCCT
CCCTCCCTTTCCCCCCTCTTCCTCAGCGAGGCCGTCCCAACGGGCATGTT
TTTTCAGTACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATA
CCAATTTCATAAATTTCTCGATTAAGAACAAGCTCGAAGTATACAAAGCC
ATGATGGACTGCCTTCTCGCCAAGTGCATTCCCTGTAAGTGCCCTCCCTC
CCTCCCTCTCTCCCTCCCTTCCTCTCTGCCTCCTTCCCTCGTTCCCTCCT
CCTCAAGGTTGTTCACGCGCGTCGTGATGAGCTTGTGAACCTACCCCTCA
TCCTGTCTATTTCCCTATACTCCACAGCACTCATCCCTTCCCTCCCTGAC
ATCCACGCTATACTTATCTTTTCCTCTTTCCCTCCCTCCCCCCACTTCTC
TCTAAGGTATTTCGGACTGTGTCATGGCCGAACTGGAGAAGTTGGGATCC
AAATACACCCTGGCCTTGAGGTAGGGAGGGATGGAGGGAAGGCAGGAGGG
AGGGAGGGGGAGAGGACGGAGAAAACCTCTCTCATTCCTGATCCCTCCAA
CATTGACCGACACACTCCTCCATTCCTCCTTCCCGTCCCCCTCCTCCCTT
CCTCCCTCCTTCCTTAAGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTC
CATGCTCCCATTCAGGGACGTACGCCGATGACTGCATCGTGGAGAGAGTG
ACGCAGGTACGGTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTTCCTACTTCTCGCCTCAACCTGTCTCCTTTCCTAAAGCTTGTGAGCA
TGCGGGGAAGCGTCCAAAAAGTAACGAGAAGAAAATCTTATCCCAAATCC
TCTCTCCCTCCCTTCCTCCCTCCCTCCCTCCACATTCTCATACCTCTCTC
CCTCTCTCTCTCCCTTCCTCCCTTCCTCCTTCCCCCTCCCTGCCTCCCTG
CAGCACCGTTGCTTCATCGTCGCGACCTGTGACAAGGACCTCAAGCGACG
CCTGCGGAAGATACCCGGAGTTCCCATCATGTACGTAGCGAATCGCAAGT
ACAGCATTGAGCGGATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAGG back to topCoding sequence (CDS) from alignment at chr27:516359..518206- >NO27G01560.3 ID=NO27G01560.3|Name=NO27G01560.3|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at chr27:516359..518206- (Nannochloropsis oceanica)
ATGACTGGGCCTTCACACACTGTTACCCTGGAGGATATCGTAGCAACTGC
CCGTGTCGACAACACCGCGCAAGCAACTAATGGACAACCCTCACCCTGCC
TCCCCGTCTCCCTCCACAGCACACGACTACCACCACCACCACCACCATTA
CGATACGCCATGGGCAAGGCCAAGAAAACACGCAAGTACGCCGTAATGAA
GAAGCAGATCTCACCCAAAGACCCCCGGCTCAAGGACAACATCGAGAAGG
CCAAGAAGCGGGCCGAGGCGGTCGCAAAATCACTTACGCGTGAAGTCGAG
GCCGTCCCAACGGGCATGTTTTTTCAGTACAACACTTCTCTCGGCCCCCC
TTTCCGTGTCTTGGTTGATACCAATTTCATAAATTTCTCGATTAAGAACA
AGCTCGAAGTATACAAAGCCATGATGGACTGCCTTCTCGCCAAGTGCATT
CCCTGTAAGTGCCCTCCCTCCCTCCCTCTCTCCCTCCCTTCCTCTCTGCC
TCCTTCCCTCGTTCCCTCCTCCTCAAGGTTGTTCACGCGCGTCGTGATGA
GCTTGTGA back to top
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