NO27G01560.1, NO27G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO27G01560.1
Unique NameNO27G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length864
Alignment locationchr27:516359..518206 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:516359..518206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO27G01560.1 vs.
Match: XP_020632890.1 (rRNA-processing protein FCF1 homolog [Orbicella faveolata])

HSP 1 Score: 300.4 bits (768), Expect = 5.000e-78
Identity = 136/196 (69.39%), Postives = 168/196 (85.71%), Query Frame = 0 
Query:   54 MGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVEAVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCIPCISDCVMAELEKLGSKYTLALRLAKDPRFERLPCSHSGTYADDCIVERVTQHRCFIVATCDKDLKRRLRKIPGVPIMYVANRKYSIERMPEAFGAPRL 250
            MGKAKKTRK+A +K+ ISPKD R+K N EK K++ +    + TR VE   + +FFQYNT LGPP+ +LVDTNFINFSIKNKL++ K+MMDCL AKC+PCI+DCVMAELEKLGSKY +ALR+AKDPRF+RLPC H GTYADDCIV R+ QH+C+IVATCD+DLKRR+RK+PGVPIMY++  KY+IERMP+A+GAPR+
Sbjct:    1 MGKAKKTRKFAAVKRMISPKDMRIKQNQEKEKEKRKKQEDNETRHVEQSSSALFFQYNTQLGPPYYILVDTNFINFSIKNKLDIVKSMMDCLYAKCVPCITDCVMAELEKLGSKYRVALRMAKDPRFDRLPCMHRGTYADDCIVNRIQQHKCYIVATCDRDLKRRIRKVPGVPIMYISQHKYTIERMPDAYGAPRV 196
The following BLAST results are available for this feature:
BLAST of NO27G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_020632890.15.000e-7869.39rRNA-processing protein FCF1 homolog [Orbicella fa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G01560NO27G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO27G01560.1NO27G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO27G01560.1.cds1NO27G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01560.1.cds2NO27G01560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01560.1.cds3NO27G01560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01560.1.cds4NO27G01560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01560.1.cds5NO27G01560.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO27G01560.1.cds6NO27G01560.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO27G01560.1 ID=NO27G01560.1|Name=NO27G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=864bp
TGCCACCTGCCCATGTCTTAGCCTCCTCTCCGCCTCGCTTCGTTCGTACA
GCAAGCATACTAGGATAGTGATCATTGCCGTACAAACACAGGAGTTGTTG
CACACCCGTGCGCATGACTGGGCCTTCACACACTGTTACCCTGGAGGATA
TCGTAGCAACTGCCCGTGTCGACAACACCGCGCAAGCAACTAATGGACAA
CCCTCACCCTGCCTCCCCGTCTCCCTCCACAGCACACGACTACCACCACC
ACCACCACCATTACGATACGCCATGGGCAAGGCCAAGAAAACACGCAAGT
ACGCCGTAATGAAGAAGCAGATCTCACCCAAAGACCCCCGGCTCAAGGAC
AACATCGAGAAGGCCAAGAAGCGGGCCGAGGCGGTCGCAAAATCACTTAC
GCGTGAAGTCGAGGCCGTCCCAACGGGCATGTTTTTTCAGTACAACACTT
CTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATACCAATTTCATAAATTTC
TCGATTAAGAACAAGCTCGAAGTATACAAAGCCATGATGGACTGCCTTCT
CGCCAAGTGCATTCCCTGTATTTCGGACTGTGTCATGGCCGAACTGGAGA
AGTTGGGATCCAAATACACCCTGGCCTTGAGACTTGCCAAAGACCCTCGT
TTCGAGCGTCTTCCATGCTCCCATTCAGGGACGTACGCCGATGACTGCAT
CGTGGAGAGAGTGACGCAGCACCGTTGCTTCATCGTCGCGACCTGTGACA
AGGACCTCAAGCGACGCCTGCGGAAGATACCCGGAGTTCCCATCATGTAC
GTAGCGAATCGCAAGTACAGCATTGAGCGGATGCCTGAAGCGTTTGGCGC
CCCCCGATTGTAGG
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protein sequence of NO27G01560.1

>NO27G01560.1-protein ID=NO27G01560.1-protein|Name=NO27G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MTGPSHTVTLEDIVATARVDNTAQATNGQPSPCLPVSLHSTRLPPPPPPL
RYAMGKAKKTRKYAVMKKQISPKDPRLKDNIEKAKKRAEAVAKSLTREVE
AVPTGMFFQYNTSLGPPFRVLVDTNFINFSIKNKLEVYKAMMDCLLAKCI
PCISDCVMAELEKLGSKYTLALRLAKDPRFERLPCSHSGTYADDCIVERV
TQHRCFIVATCDKDLKRRLRKIPGVPIMYVANRKYSIERMPEAFGAPRL*
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mRNA from alignment at chr27:516359..518206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO27G01560.1 ID=NO27G01560.1|Name=NO27G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp|location=Sequence derived from alignment at chr27:516359..518206- (Nannochloropsis oceanica)
TGCCACCTGCCCATGTCTTAGCCTCCTCTCCGCCTCGCTTCGTTCGTACA
GCAAGCATACTAGGATAGTGATCATTGCCGTACAAACACAGGAGTTGTTG
CACACCCGTGCGCATGACTGGGCCTTCACACACTGTTACCCTGGAGGATA
TCGTAGCAACTGCCCGTGTCGACAACACCGCGCAAGCAACTAATGGACAA
CCCTCACCCTGCCTCCCCGTCTCCCTCCACAGCACACGACTACCACCACC
ACCACCACCATTACGATACGCCATGGGCAAGGCCAAGAAAACACGCAAGT
ACGCCGTAATGAAGAAGCAGATCTCACCCAAAGACCCCCGGCTGTACGTA
CCAAGGAGGGAGGGGAGGAGGGGAAGAGAGAGGGGTGGGGAGGTCAAGTC
CTGGGTTCATACCTCTTCTTCGTCAATCAATCAATCAGTCGATCAGATCC
CTTGTGTACGTTAATAGTCTAGGATCATTTGGATAGGAGTTAAATTTGAG
GACTGCGACAAAAGGAAGCAGAGCATGATCCAATTGTGGCTCTTCTTGTC
GTTTAACAGCCTCCCCCTCCCGTCCCCCTCCCCCACTATCCTCTCCTCGC
CTCCTCAGCAAGGACAACATCGAGAAGGCCAAGAAGCGGGCCGAGGCGGT
CGCAAAATCACTTACGCGTGAAGTGTAAGTACCACCGATCGAAGGATAGA
GGGATGGTAGGAGATACGCTGCGTAGAGTCAGATACTCATCTCCCTCCCT
CCCTCCCTTTCCCCCCTCTTCCTCAGCGAGGCCGTCCCAACGGGCATGTT
TTTTCAGTACAACACTTCTCTCGGCCCCCCTTTCCGTGTCTTGGTTGATA
CCAATTTCATAAATTTCTCGATTAAGAACAAGCTCGAAGTATACAAAGCC
ATGATGGACTGCCTTCTCGCCAAGTGCATTCCCTGTAAGTGCCCTCCCTC
CCTCCCTCTCTCCCTCCCTTCCTCTCTGCCTCCTTCCCTCGTTCCCTCCT
CCTCAAGGTTGTTCACGCGCGTCGTGATGAGCTTGTGAACCTACCCCTCA
TCCTGTCTATTTCCCTATACTCCACAGCACTCATCCCTTCCCTCCCTGAC
ATCCACGCTATACTTATCTTTTCCTCTTTCCCTCCCTCCCCCCACTTCTC
TCTAAGGTATTTCGGACTGTGTCATGGCCGAACTGGAGAAGTTGGGATCC
AAATACACCCTGGCCTTGAGGTAGGGAGGGATGGAGGGAAGGCAGGAGGG
AGGGAGGGGGAGAGGACGGAGAAAACCTCTCTCATTCCTGATCCCTCCAA
CATTGACCGACACACTCCTCCATTCCTCCTTCCCGTCCCCCTCCTCCCTT
CCTCCCTCCTTCCTTAAGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTC
CATGCTCCCATTCAGGGACGTACGCCGATGACTGCATCGTGGAGAGAGTG
ACGCAGGTACGGTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTTCCTACTTCTCGCCTCAACCTGTCTCCTTTCCTAAAGCTTGTGAGCA
TGCGGGGAAGCGTCCAAAAAGTAACGAGAAGAAAATCTTATCCCAAATCC
TCTCTCCCTCCCTTCCTCCCTCCCTCCCTCCACATTCTCATACCTCTCTC
CCTCTCTCTCTCCCTTCCTCCCTTCCTCCTTCCCCCTCCCTGCCTCCCTG
CAGCACCGTTGCTTCATCGTCGCGACCTGTGACAAGGACCTCAAGCGACG
CCTGCGGAAGATACCCGGAGTTCCCATCATGTACGTAGCGAATCGCAAGT
ACAGCATTGAGCGGATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAGG
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Coding sequence (CDS) from alignment at chr27:516359..518206-

>NO27G01560.1 ID=NO27G01560.1|Name=NO27G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr27:516359..518206- (Nannochloropsis oceanica)
ATGACTGGGCCTTCACACACTGTTACCCTGGAGGATATCGTAGCAACTGC
CCGTGTCGACAACACCGCGCAAGCAACTAATGGACAACCCTCACCCTGCC
TCCCCGTCTCCCTCCACAGCACACGACTACCACCACCACCACCACCATTA
CGATACGCCATGGGCAAGGCCAAGAAAACACGCAAGTACGCCGTAATGAA
GAAGCAGATCTCACCCAAAGACCCCCGGCTCAAGGACAACATCGAGAAGG
CCAAGAAGCGGGCCGAGGCGGTCGCAAAATCACTTACGCGTGAAGTCGAG
GCCGTCCCAACGGGCATGTTTTTTCAGTACAACACTTCTCTCGGCCCCCC
TTTCCGTGTCTTGGTTGATACCAATTTCATAAATTTCTCGATTAAGAACA
AGCTCGAAGTATACAAAGCCATGATGGACTGCCTTCTCGCCAAGTGCATT
CCCTGTATTTCGGACTGTGTCATGGCCGAACTGGAGAAGTTGGGATCCAA
ATACACCCTGGCCTTGAGACTTGCCAAAGACCCTCGTTTCGAGCGTCTTC
CATGCTCCCATTCAGGGACGTACGCCGATGACTGCATCGTGGAGAGAGTG
ACGCAGCACCGTTGCTTCATCGTCGCGACCTGTGACAAGGACCTCAAGCG
ACGCCTGCGGAAGATACCCGGAGTTCCCATCATGTACGTAGCGAATCGCA
AGTACAGCATTGAGCGGATGCCTGAAGCGTTTGGCGCCCCCCGATTGTAG
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Synonyms
Publications