NO26G01780, NO26G01780 (gene) Nannochloropsis oceanica

Overview
NameNO26G01780
Unique NameNO26G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2920
Alignment locationchr26:592492..596574 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:592492..596574 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO26G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|183185gene_8015Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01780.1NO26G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO26G01780.2NO26G01780.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO26G01780.3NO26G01780.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01780.1NO26G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO26G01780.2NO26G01780.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO26G01780.3NO26G01780.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01780 ID=NO26G01780|Name=NO26G01780|organism=Nannochloropsis oceanica|type=gene|length=2920bp
CTCCCTCCCTCCCTCCCTCCCTATTCTGGATATAATTCTTCCTCTTTCAT
TTACTCCCTCCCTCTGTCCGTCACTCTCTCGCTCTCTCCCTCCCCTGTTC
CCTCCGCCGATATCATGCTTGCTCATACCACCCTGCCCTCCCTCCTTCCC
TCCCTCCCTCCCTCCTCCAGGCCCGTGATGGAGGCATCCTACGAGCCATG
CGTCTGTTGAAGCCCGACATGGTGGAAAAGAAGAAGgtgagggaggaggt
agggagagagggaaggaagggaagggaagggaaggagggacttataaccc
ggaagatatacccctcacctgatgcgtttttgcagtggaaattgcatacc
ttcttctcctgtccttatctctctgtctctctctgtctctctctctctct
ctgtctctctctctctctctctgtctctctctctctctctctttctctct
ctgtctctctctctgtctgtctctctctctcttttcctttccctccagtg
aataatgcccttcctgcgctcccctcttctcatccctccctccctccctc
cctccctccctccctccctccctccctccctccttcgccagTCGAACTTT
TCTACGCCAACCTCCACCCTCGGGATGGCTCAAGACATGGTGTATGATGT
AGGGCCTGTCGGACTCCGCCTCAAAgtacgcacgccctccctccctccct
ccctcccaacttgttccacatgccttttgaatctttgtctgacggaacgc
attcttccctccctccctccctccctccctccctccctccctctttccct
cctccctctcacacctcctccctccctccctccctccctcccttcttcat
ttcttccctccccccttcagGCCCTTGGAGATAATCCCATCATCAGCATC
TCCAACGACGGCCTTAATATCTACGTCCTCCCCCGCGGCTTTGGAAAAGg
taaagcacctgtccctctcccccttcctccctccctccttccctccctcc
ctcaggcccggatggtgtcctcgtccttgaacgaatgattgccttatccc
tccctccctccttccctccctccctccttccctccctccctccctccctc
agGTCCGGATGGTGTCCTCGTCCTTGAACGGTTTCCCGCCTCGGCCCTCG
TGTACGAGATTCAAGATTTGGgtgaggagggagggaggaagggagggagg
agagggaagaaaaggtatcagagaaagggaggggataagataaggattct
ctgagccttagggagggagggagggagggagggagggagggagggaggga
ggtatcaactggaatattcggatgggcgtgagagcacggagcactcacat
tctcctgtattgtcctccctccctccctccctccctccctacctccctac
ctccttcagGTGACGAGGAGAGTAAGGCAGCTACCATCGACCACGGCAGT
GTCTGTCAAGgtgcgtgtcctccctccctccctcccttcctccctccctg
cctccctccctgcctccctccttccctccctcccctcccgtcttggtcac
ccgtcgagagaagaccttgatgaaagggacatgcccctgcccccgccctc
cctccctccctcccttactcgtctccccgcaccaattcaccctccctccc
tccctccctccctcagACGGTGGCTCGGCGATGACTTTATCCGCGAATGA
CGACTACCTCTACGTCGCCTGCCACCAGGAGGGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGCGGGGGCAG
GGGCATGTCCCTTTCATCAAGGTCTTCTCTCGACGGGTGACCAAGACGGG
AGGGGAGGGATGGAAGGAGGGAGGGAGGGATGGAGGGAGGGAAGGAGGGA
AGGAGGGAGGGAGGGAGGACGCGGGTCTCCGGTGGGTGGAGGACGTGGAG
CTGCCGGAGGGGATGAATAAGgtgagggagggagggagggagggagggag
ggagggagggcgggcgggtcaggttgccgcagtagagatagcgtgtacgt
aattcagatcttccctccctccctccctccctccctccctccctccctcc
ttccctccctccctcccttcctccctcccttcctcccttccttcctccct
ttctagATTGCCTTGATTGTCCGCTCTCCCGATGGAGAGGGGCTTTATGT
GGTGGCTGCTCAAGAAGGAGGGAAGCAGGCCGTGCTGTCCTACGTgtagg
gagggaggaagggagggaaggagggagggagggagggagggttggttggt
ctcgtctaccggctccgtcggttgtaaagtttcttactcattcctccctc
cctccctccctccctccctccctccctccctccctccctcccttcctcgc
agCCTGAACTCCAAGACTCATAAACTCCGCCTAGCCCAGTCACTTTCCTC
CCTTTACCTCCCCTCCTCCAGCATCAACTTCGGTGCCTTCGgtacgtcta
tcccctccctccctccctccctccccctctccccggacgcaaaaggaggg
catttctttccaggcgacatcctcgctgtaaccacctttccctccctccc
tccctccctccctccccccctccctagATGCTGAGGGACAGCACCTCTTC
CTCGGTGATGGTCACGAGAAAAATTTCCACTCGTGGATTGTCGCGGGCGC
CTTTGTCTTCCGCCGTCAACCAGgtaggcagggagggagggagggaggga
agcagggaaggagggagggagggcgtatttttcctcaatagttaacgcat
ccatctttctcatctcaattcccccccccgccctctctttctctctccct
ctctccctccctcctaatttccaaagCAAACGACCTGGCCCTGACCTTTG
ATCCCCGCCATCCCGTCTAG
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protein sequence of NO26G01780.1

>NO26G01780.1-protein ID=NO26G01780.1-protein|Name=NO26G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MANLAINFRSSTVTNLKSLSSLLLSFLPPSSGNFVAQDHNDIYFVDKEAR
DGGILRAMRLLKPDMVEKKKSNFSTPTSTLGMAQDMVYDVGPVGLRLKAL
GDNPIISISNDGLNIYVLPRGFGKGPDGVLVLERFPASALVYEIQDLGDE
ESKAATIDHGSVCQDGGSAMTLSANDDYLYVACHQEGEGGREGGREGGRK
EGREGGRGQGHVPFIKVFSRRVTKTGGEGWKEGGRDGGREGGKEGGREDA
GLRWVEDVELPEGMNKIALIVRSPDGEGLYVVAAQEGGKQAVLSYVLNSK
THKLRLAQSLSSLYLPSSSINFGAFDAEGQHLFLGDGHEKNFHSWIVAGA
FVFRRQPANDLALTFDPRHPV*
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protein sequence of NO26G01780.2

>NO26G01780.2-protein ID=NO26G01780.2-protein|Name=NO26G01780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MKMPGLASSATAILFGYVSLTAAQEDPTSPSTSNNNLRWRRTQTSIPRQD
TRHGLLVSDLLIDPTMSYSGGNFVAQDHNDIYFVDKEARDGGILRAMRLL
KPDMVEKKKSNFSTPTSTLGMAQDMVYDVGPVGLRLKALGDNPIISISND
GLNIYVLPRGFGKGPDGVLVLERFPASALVYEIQDLGDEESKAATIDHGS
VCQDGGSAMTLSANDDYLYVACHQEGEGGREGGREGGRKEGREGGRGQGH
VPFIKVFSRRVTKTGGEGWKEGGRDGGREGGKEGGREDAGLRWVEDVELP
EGMNKIALIVRSPDGEGLYVVAAQEGGKQAVLSYVLNSKTHKLRLAQSLS
SLYLPSSSINFGAFDAEGQHLFLGDGHEKNFHSWIVAGAFVFRRQPANDL
ALTFDPRHPV*
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protein sequence of NO26G01780.3

>NO26G01780.3-protein ID=NO26G01780.3-protein|Name=NO26G01780.3|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MRLLKPDMVEKKKSNFSTPTSTLGMAQDMVYDVGPVGLRLKALGDNPIIS
ISNDGLNIYVLPRGFGKGPDGVLVLERFPASALVYEIQDLGDEESKAATI
DHGSVCQDGGSAMTLSANDDYLYVACHQEGEGGREGGREGGRKEGREGGR
GQGHVPFIKVFSRRVTKTGGEGWKEGGRDGGREGGKEGGREDAGLRWVED
VELPEGMNKIALIVRSPDGEGLYVVAAQEGGKQAVLSYVLNSKTHKLRLA
QSLSSLYLPSSSINFGAFDAEGQHLFLGDGHEKNFHSWIVAGAFVFRRQP
ANDLALTFDPRHPV*
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Synonyms
Publications