NO26G01780.2, NO26G01780.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01780.2
Unique NameNO26G01780.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1494
Alignment locationchr26:592492..596574 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:592492..596574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO26G01780.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01780NO26G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01780.2NO26G01780.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01780.2.cds1NO26G01780.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds2NO26G01780.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds3NO26G01780.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds4NO26G01780.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds5NO26G01780.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds6NO26G01780.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds7NO26G01780.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds8NO26G01780.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds9NO26G01780.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds10NO26G01780.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds11NO26G01780.2.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds12NO26G01780.2.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds13NO26G01780.2.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.2.cds14NO26G01780.2.cds14Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01780.2 ID=NO26G01780.2|Name=NO26G01780.2|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
CCTCCAGCAACAGCACCAGCGCTATCGGCGGCGGCACCAGCACCATGAAG
ATGCCTGGCCTTGCCTCGTCGGCGACAGCAATCCTCTTCGGATATGTCTC
CCTCACCGCCGCCCAAGAAGACCCCACCAGCCCATCTACCAGCAACAACA
ATCTTCGGTGGCGCCGCACACAGACGAGCATTCCCCGCCAAGACACGCGG
CACGGCCTGCTGGTATCCGATCTTCTCATAGACCCGACCATGTCCTACTC
CGGTGGGAATTTCGTCGCCCAAGACCATAACGACATCTACTTCGTAGACA
AGGAGGCCCGTGATGGAGGCATCCTACGAGCCATGCGTCTGTTGAAGCCC
GACATGGTGGAAAAGAAGAAGTCGAACTTTTCTACGCCAACCTCCACCCT
CGGGATGGCTCAAGACATGGTGTATGATGTAGGGCCTGTCGGACTCCGCC
TCAAAGCCCTTGGAGATAATCCCATCATCAGCATCTCCAACGACGGCCTT
AATATCTACGTCCTCCCCCGCGGCTTTGGAAAAGGTCCGGATGGTGTCCT
CGTCCTTGAACGGTTTCCCGCCTCGGCCCTCGTGTACGAGATTCAAGATT
TGGGTGACGAGGAGAGTAAGGCAGCTACCATCGACCACGGCAGTGTCTGT
CAAGACGGTGGCTCGGCGATGACTTTATCCGCGAATGACGACTACCTCTA
CGTCGCCTGCCACCAGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGAAGGAAGGGAGGGAGGGAGGGCGGGGGCAGGGGCATGTCCCT
TTCATCAAGGTCTTCTCTCGACGGGTGACCAAGACGGGAGGGGAGGGATG
GAAGGAGGGAGGGAGGGATGGAGGGAGGGAAGGAGGGAAGGAGGGAGGGA
GGGAGGACGCGGGTCTCCGGTGGGTGGAGGACGTGGAGCTGCCGGAGGGG
ATGAATAAGATTGCCTTGATTGTCCGCTCTCCCGATGGAGAGGGGCTTTA
TGTGGTGGCTGCTCAAGAAGGAGGGAAGCAGGCCGTGCTGTCCTACGTCC
TGAACTCCAAGACTCATAAACTCCGCCTAGCCCAGTCACTTTCCTCCCTT
TACCTCCCCTCCTCCAGCATCAACTTCGGTGCCTTCGATGCTGAGGGACA
GCACCTCTTCCTCGGTGATGGTCACGAGAAAAATTTCCACTCGTGGATTG
TCGCGGGCGCCTTTGTCTTCCGCCGTCAACCAGCAAACGACCTGGCCCTG
ACCTTTGATCCCCGCCATCCCGTCTAGAAACCTCGAGGGGGAGGGAGAGA
GGGAGGGACGGCCCATGTAACATGTACATAGCCATTGGTTTAAGAAATCG
AAAGGGCGAGCAACATACCCCCCCCCAAAAAATGGATACTGGTGGCAAAT
GAAGGGAGGAGGGGGAGGATGTATAAGCAGGAAATAAATAAATAGAAAAA
CAAATAAATAAATAAAATAGCGAGCGTAGGTCGCGACCCAGATG
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protein sequence of NO26G01780.2

>NO26G01780.2-protein ID=NO26G01780.2-protein|Name=NO26G01780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MKMPGLASSATAILFGYVSLTAAQEDPTSPSTSNNNLRWRRTQTSIPRQD
TRHGLLVSDLLIDPTMSYSGGNFVAQDHNDIYFVDKEARDGGILRAMRLL
KPDMVEKKKSNFSTPTSTLGMAQDMVYDVGPVGLRLKALGDNPIISISND
GLNIYVLPRGFGKGPDGVLVLERFPASALVYEIQDLGDEESKAATIDHGS
VCQDGGSAMTLSANDDYLYVACHQEGEGGREGGREGGRKEGREGGRGQGH
VPFIKVFSRRVTKTGGEGWKEGGRDGGREGGKEGGREDAGLRWVEDVELP
EGMNKIALIVRSPDGEGLYVVAAQEGGKQAVLSYVLNSKTHKLRLAQSLS
SLYLPSSSINFGAFDAEGQHLFLGDGHEKNFHSWIVAGAFVFRRQPANDL
ALTFDPRHPV*
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mRNA from alignment at chr26:592492..596574+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01780.2 ID=NO26G01780.2|Name=NO26G01780.2|organism=Nannochloropsis oceanica|type=mRNA|length=4083bp|location=Sequence derived from alignment at chr26:592492..596574+ (Nannochloropsis oceanica)
CCTCCAGCAACAGCACCAGCGCTATCGGCGGCGGCACCAGCACCATGAAG ATGCCTGGCCTTGCCTCGTCGGCGACAGCAATCCTCTTCGGGTGCGTACA TCTCGGTCTACCCACCACAAATATGGTTGGGTTCGATTCGGTTTGATCTA CTTGCCTGTCTGCATACTTGTGAAGAAGATGGCGTTCGTGCTGTTCTTGG ATCCCTGACCCCTTAACCTCCCCCCCGTTTTTCCCTCCCCCCCCCCCTTA TTCGTTTGTGTCCAAGATATGTCTCCCTCACCGCCGCCCAAGAAGACCCC ACCAGCCCATCTACCAGCAACAACAATCTTCGGTGGCGCCGCACACAGAC GGTACGAGGAAGTGAGGGAGTGAGGGAGGGAGGGACTAAAGGTTTGTCAC TGGATCAATTAGGTGCGGCGTTGCCATGCGTGGTAGCTAGAGGAGGAGGG GTGAGCGTAGAAGGAGAGGGAGGGAGGAGGACTAGAAGACATGAAGAGAA GCTTGTGGTGATGCCCTGGGCTGCCGTGGGTAGAGTAAGAGTGCCCTCCT TACCCCGCCTTCAATCCCTCCCTCCCTGCCCTCTTCCCTCCCTCCCTCTC TCCCTAGAGCATTCCCCGCCAAGACACGCGGCACGGCCTGCTGGTATCCG ATCTTCTCATAGACCCGACCATGTCCTACTCCGGTGGTGAGGAGGGAGGA AGAGAGGGAGAGAGGGGGGGAGAGAGGGCGGGCATATGCCTTCGGGACGG AGGCAGGGAAGGAGGCAGGGAAGGAGGAAGGGATGGCAAACCTTGCTATT AATTTCAGAAGCAGCACGGTAACAAATCTCAAATCTCTCTCTTCCCTCCT TCTTTCCTTCCTCCCTCCCTCCTCAGGGAATTTCGTCGCCCAAGACCATA ACGACATCTACTTCGTAGACAAGGAGGTGCCTCCCTCCCTCCCTCCCTCC CTCCCTCCCTCCCTCCCTATTCTGGATATAATTCTTCCTCTTTCATTTAC TCCCTCCCTCTGTCCGTCACTCTCTCGCTCTCTCCCTCCCCTGTTCCCTC CGCCGATATCATGCTTGCTCATACCACCCTGCCCTCCCTCCTTCCCTCCC TCCCTCCCTCCTCCAGGCCCGTGATGGAGGCATCCTACGAGCCATGCGTC TGTTGAAGCCCGACATGGTGGAAAAGAAGAAGGTGAGGGAGGAGGTAGGG AGAGAGGGAAGGAAGGGAAGGGAAGGGAAGGAGGGACTTATAACCCGGAA GATATACCCCTCACCTGATGCGTTTTTGCAGTGGAAATTGCATACCTTCT TCTCCTGTCCTTATCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTCTGT CTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTTTCTCTCTCTGT CTCTCTCTCTGTCTGTCTCTCTCTCTCTTTTCCTTTCCCTCCAGTGAATA ATGCCCTTCCTGCGCTCCCCTCTTCTCATCCCTCCCTCCCTCCCTCCCTC CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCGCCAGTCGAACTTTTCTA CGCCAACCTCCACCCTCGGGATGGCTCAAGACATGGTGTATGATGTAGGG CCTGTCGGACTCCGCCTCAAAGTACGCACGCCCTCCCTCCCTCCCTCCCT CCCAACTTGTTCCACATGCCTTTTGAATCTTTGTCTGACGGAACGCATTC TTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCTCCTC CCTCTCACACCTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTCATTTCT TCCCTCCCCCCTTCAGGCCCTTGGAGATAATCCCATCATCAGCATCTCCA ACGACGGCCTTAATATCTACGTCCTCCCCCGCGGCTTTGGAAAAGGTAAA GCACCTGTCCCTCTCCCCCTTCCTCCCTCCCTCCTTCCCTCCCTCCCTCA GGCCCGGATGGTGTCCTCGTCCTTGAACGAATGATTGCCTTATCCCTCCC TCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCAGGT CCGGATGGTGTCCTCGTCCTTGAACGGTTTCCCGCCTCGGCCCTCGTGTA CGAGATTCAAGATTTGGGTGAGGAGGGAGGGAGGAAGGGAGGGAGGAGAG GGAAGAAAAGGTATCAGAGAAAGGGAGGGGATAAGATAAGGATTCTCTGA GCCTTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTA TCAACTGGAATATTCGGATGGGCGTGAGAGCACGGAGCACTCACATTCTC CTGTATTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCCCTACCTCC TTCAGGTGACGAGGAGAGTAAGGCAGCTACCATCGACCACGGCAGTGTCT GTCAAGGTGCGTGTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTGCCTC CCTCCCTGCCTCCCTCCTTCCCTCCCTCCCCTCCCGTCTTGGTCACCCGT CGAGAGAAGACCTTGATGAAAGGGACATGCCCCTGCCCCCGCCCTCCCTC CCTCCCTCCCTTACTCGTCTCCCCGCACCAATTCACCCTCCCTCCCTCCC TCCCTCCCTCAGACGGTGGCTCGGCGATGACTTTATCCGCGAATGACGAC TACCTCTACGTCGCCTGCCACCAGGAGGGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGCGGGGGCAGGGGC ATGTCCCTTTCATCAAGGTCTTCTCTCGACGGGTGACCAAGACGGGAGGG GAGGGATGGAAGGAGGGAGGGAGGGATGGAGGGAGGGAAGGAGGGAAGGA GGGAGGGAGGGAGGACGCGGGTCTCCGGTGGGTGGAGGACGTGGAGCTGC CGGAGGGGATGAATAAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG GGAGGGCGGGCGGGTCAGGTTGCCGCAGTAGAGATAGCGTGTACGTAATT CAGATCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCC CTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTTCCTTCCTCCCTTTCT AGATTGCCTTGATTGTCCGCTCTCCCGATGGAGAGGGGCTTTATGTGGTG GCTGCTCAAGAAGGAGGGAAGCAGGCCGTGCTGTCCTACGTGTAGGGAGG GAGGAAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGTTGGTTGGTCTCG TCTACCGGCTCCGTCGGTTGTAAAGTTTCTTACTCATTCCTCCCTCCCTC CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCGCAGCC TGAACTCCAAGACTCATAAACTCCGCCTAGCCCAGTCACTTTCCTCCCTT TACCTCCCCTCCTCCAGCATCAACTTCGGTGCCTTCGGTACGTCTATCCC CTCCCTCCCTCCCTCCCTCCCCCTCTCCCCGGACGCAAAAGGAGGGCATT TCTTTCCAGGCGACATCCTCGCTGTAACCACCTTTCCCTCCCTCCCTCCC TCCCTCCCTCCCCCCCTCCCTAGATGCTGAGGGACAGCACCTCTTCCTCG GTGATGGTCACGAGAAAAATTTCCACTCGTGGATTGTCGCGGGCGCCTTT GTCTTCCGCCGTCAACCAGGTAGGCAGGGAGGGAGGGAGGGAGGGAAGCA GGGAAGGAGGGAGGGAGGGCGTATTTTTCCTCAATAGTTAACGCATCCAT CTTTCTCATCTCAATTCCCCCCCCCGCCCTCTCTTTCTCTCTCCCTCTCT CCCTCCCTCCTAATTTCCAAAGCAAACGACCTGGCCCTGACCTTTGATCC CCGCCATCCCGTCTAGAAACCTCGAGGGGGAGGGAGAGAGGGAGGGACGG CCCATGTAACATGTACATAGCCATTGGTTTAAGAAATCGAAAGGGCGAGC AACATACCCCCCCCCAAAAAATGGATACTGGTGGCAAATGAAGGGAGGAG GGGGAGGATGTATAAGCAGGAAATAAATAAATAGAAAAACAAATAAATAA ATAAAATAGCGAGCGTAGGTCGCGACCCAGATG
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Coding sequence (CDS) from alignment at chr26:592492..596574+

>NO26G01780.2 ID=NO26G01780.2|Name=NO26G01780.2|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr26:592492..596574+ (Nannochloropsis oceanica)
ATGAAGATGCCTGGCCTTGCCTCGTCGGCGACAGCAATCCTCTTCGGATA
TGTCTCCCTCACCGCCGCCCAAGAAGACCCCACCAGCCCATCTACCAGCA
ACAACAATCTTCGGTGGCGCCGCACACAGACGAGCATTCCCCGCCAAGAC
ACGCGGCACGGCCTGCTGGTATCCGATCTTCTCATAGACCCGACCATGTC
CTACTCCGGTGGGAATTTCGTCGCCCAAGACCATAACGACATCTACTTCG
TAGACAAGGAGGCCCGTGATGGAGGCATCCTACGAGCCATGCGTCTGTTG
AAGCCCGACATGGTGGAAAAGAAGAAGTCGAACTTTTCTACGCCAACCTC
CACCCTCGGGATGGCTCAAGACATGGTGTATGATGTAGGGCCTGTCGGAC
TCCGCCTCAAAGCCCTTGGAGATAATCCCATCATCAGCATCTCCAACGAC
GGCCTTAATATCTACGTCCTCCCCCGCGGCTTTGGAAAAGGTCCGGATGG
TGTCCTCGTCCTTGAACGGTTTCCCGCCTCGGCCCTCGTGTACGAGATTC
AAGATTTGGGTGACGAGGAGAGTAAGGCAGCTACCATCGACCACGGCAGT
GTCTGTCAAGACGGTGGCTCGGCGATGACTTTATCCGCGAATGACGACTA
CCTCTACGTCGCCTGCCACCAGGAGGGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGCGGGGGCAGGGGCAT
GTCCCTTTCATCAAGGTCTTCTCTCGACGGGTGACCAAGACGGGAGGGGA
GGGATGGAAGGAGGGAGGGAGGGATGGAGGGAGGGAAGGAGGGAAGGAGG
GAGGGAGGGAGGACGCGGGTCTCCGGTGGGTGGAGGACGTGGAGCTGCCG
GAGGGGATGAATAAGATTGCCTTGATTGTCCGCTCTCCCGATGGAGAGGG
GCTTTATGTGGTGGCTGCTCAAGAAGGAGGGAAGCAGGCCGTGCTGTCCT
ACGTCCTGAACTCCAAGACTCATAAACTCCGCCTAGCCCAGTCACTTTCC
TCCCTTTACCTCCCCTCCTCCAGCATCAACTTCGGTGCCTTCGATGCTGA
GGGACAGCACCTCTTCCTCGGTGATGGTCACGAGAAAAATTTCCACTCGT
GGATTGTCGCGGGCGCCTTTGTCTTCCGCCGTCAACCAGCAAACGACCTG
GCCCTGACCTTTGATCCCCGCCATCCCGTCTAG
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Synonyms
Publications