NO26G01780.3, NO26G01780.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO26G01780.3
Unique NameNO26G01780.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1142
Alignment locationchr26:593438..596357 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:593438..596357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO26G01780.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01780NO26G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO26G01780.3NO26G01780.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO26G01780.3.cds1NO26G01780.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds2NO26G01780.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds3NO26G01780.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds4NO26G01780.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds5NO26G01780.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds6NO26G01780.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds7NO26G01780.3.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds8NO26G01780.3.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds9NO26G01780.3.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO26G01780.3.cds10NO26G01780.3.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO26G01780.3 ID=NO26G01780.3|Name=NO26G01780.3|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp
CTCCCTCCCTCCCTCCCTCCCTATTCTGGATATAATTCTTCCTCTTTCAT
TTACTCCCTCCCTCTGTCCGTCACTCTCTCGCTCTCTCCCTCCCCTGTTC
CCTCCGCCGATATCATGCTTGCTCATACCACCCTGCCCTCCCTCCTTCCC
TCCCTCCCTCCCTCCTCCAGGCCCGTGATGGAGGCATCCTACGAGCCATG
CGTCTGTTGAAGCCCGACATGGTGGAAAAGAAGAAGTCGAACTTTTCTAC
GCCAACCTCCACCCTCGGGATGGCTCAAGACATGGTGTATGATGTAGGGC
CTGTCGGACTCCGCCTCAAAGCCCTTGGAGATAATCCCATCATCAGCATC
TCCAACGACGGCCTTAATATCTACGTCCTCCCCCGCGGCTTTGGAAAAGG
TCCGGATGGTGTCCTCGTCCTTGAACGGTTTCCCGCCTCGGCCCTCGTGT
ACGAGATTCAAGATTTGGGTGACGAGGAGAGTAAGGCAGCTACCATCGAC
CACGGCAGTGTCTGTCAAGACGGTGGCTCGGCGATGACTTTATCCGCGAA
TGACGACTACCTCTACGTCGCCTGCCACCAGGAGGGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGCGGGGG
CAGGGGCATGTCCCTTTCATCAAGGTCTTCTCTCGACGGGTGACCAAGAC
GGGAGGGGAGGGATGGAAGGAGGGAGGGAGGGATGGAGGGAGGGAAGGAG
GGAAGGAGGGAGGGAGGGAGGACGCGGGTCTCCGGTGGGTGGAGGACGTG
GAGCTGCCGGAGGGGATGAATAAGATTGCCTTGATTGTCCGCTCTCCCGA
TGGAGAGGGGCTTTATGTGGTGGCTGCTCAAGAAGGAGGGAAGCAGGCCG
TGCTGTCCTACGTCCTGAACTCCAAGACTCATAAACTCCGCCTAGCCCAG
TCACTTTCCTCCCTTTACCTCCCCTCCTCCAGCATCAACTTCGGTGCCTT
CGATGCTGAGGGACAGCACCTCTTCCTCGGTGATGGTCACGAGAAAAATT
TCCACTCGTGGATTGTCGCGGGCGCCTTTGTCTTCCGCCGTCAACCAGCA
AACGACCTGGCCCTGACCTTTGATCCCCGCCATCCCGTCTAG
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protein sequence of NO26G01780.3

>NO26G01780.3-protein ID=NO26G01780.3-protein|Name=NO26G01780.3|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MRLLKPDMVEKKKSNFSTPTSTLGMAQDMVYDVGPVGLRLKALGDNPIIS
ISNDGLNIYVLPRGFGKGPDGVLVLERFPASALVYEIQDLGDEESKAATI
DHGSVCQDGGSAMTLSANDDYLYVACHQEGEGGREGGREGGRKEGREGGR
GQGHVPFIKVFSRRVTKTGGEGWKEGGRDGGREGGKEGGREDAGLRWVED
VELPEGMNKIALIVRSPDGEGLYVVAAQEGGKQAVLSYVLNSKTHKLRLA
QSLSSLYLPSSSINFGAFDAEGQHLFLGDGHEKNFHSWIVAGAFVFRRQP
ANDLALTFDPRHPV*
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mRNA from alignment at chr26:593438..596357+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO26G01780.3 ID=NO26G01780.3|Name=NO26G01780.3|organism=Nannochloropsis oceanica|type=mRNA|length=2920bp|location=Sequence derived from alignment at chr26:593438..596357+ (Nannochloropsis oceanica)
CTCCCTCCCTCCCTCCCTCCCTATTCTGGATATAATTCTTCCTCTTTCAT
TTACTCCCTCCCTCTGTCCGTCACTCTCTCGCTCTCTCCCTCCCCTGTTC
CCTCCGCCGATATCATGCTTGCTCATACCACCCTGCCCTCCCTCCTTCCC
TCCCTCCCTCCCTCCTCCAGGCCCGTGATGGAGGCATCCTACGAGCCATG
CGTCTGTTGAAGCCCGACATGGTGGAAAAGAAGAAGGTGAGGGAGGAGGT
AGGGAGAGAGGGAAGGAAGGGAAGGGAAGGGAAGGAGGGACTTATAACCC
GGAAGATATACCCCTCACCTGATGCGTTTTTGCAGTGGAAATTGCATACC
TTCTTCTCCTGTCCTTATCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCT
CTGTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTTTCTCTCT
CTGTCTCTCTCTCTGTCTGTCTCTCTCTCTCTTTTCCTTTCCCTCCAGTG
AATAATGCCCTTCCTGCGCTCCCCTCTTCTCATCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCGCCAGTCGAACTTT
TCTACGCCAACCTCCACCCTCGGGATGGCTCAAGACATGGTGTATGATGT
AGGGCCTGTCGGACTCCGCCTCAAAGTACGCACGCCCTCCCTCCCTCCCT
CCCTCCCAACTTGTTCCACATGCCTTTTGAATCTTTGTCTGACGGAACGC
ATTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCT
CCTCCCTCTCACACCTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTCAT
TTCTTCCCTCCCCCCTTCAGGCCCTTGGAGATAATCCCATCATCAGCATC
TCCAACGACGGCCTTAATATCTACGTCCTCCCCCGCGGCTTTGGAAAAGG
TAAAGCACCTGTCCCTCTCCCCCTTCCTCCCTCCCTCCTTCCCTCCCTCC
CTCAGGCCCGGATGGTGTCCTCGTCCTTGAACGAATGATTGCCTTATCCC
TCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTC
AGGTCCGGATGGTGTCCTCGTCCTTGAACGGTTTCCCGCCTCGGCCCTCG
TGTACGAGATTCAAGATTTGGGTGAGGAGGGAGGGAGGAAGGGAGGGAGG
AGAGGGAAGAAAAGGTATCAGAGAAAGGGAGGGGATAAGATAAGGATTCT
CTGAGCCTTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGTATCAACTGGAATATTCGGATGGGCGTGAGAGCACGGAGCACTCACAT
TCTCCTGTATTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCCCTAC
CTCCTTCAGGTGACGAGGAGAGTAAGGCAGCTACCATCGACCACGGCAGT
GTCTGTCAAGGTGCGTGTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTG
CCTCCCTCCCTGCCTCCCTCCTTCCCTCCCTCCCCTCCCGTCTTGGTCAC
CCGTCGAGAGAAGACCTTGATGAAAGGGACATGCCCCTGCCCCCGCCCTC
CCTCCCTCCCTCCCTTACTCGTCTCCCCGCACCAATTCACCCTCCCTCCC
TCCCTCCCTCCCTCAGACGGTGGCTCGGCGATGACTTTATCCGCGAATGA
CGACTACCTCTACGTCGCCTGCCACCAGGAGGGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGCGGGGGCAG
GGGCATGTCCCTTTCATCAAGGTCTTCTCTCGACGGGTGACCAAGACGGG
AGGGGAGGGATGGAAGGAGGGAGGGAGGGATGGAGGGAGGGAAGGAGGGA
AGGAGGGAGGGAGGGAGGACGCGGGTCTCCGGTGGGTGGAGGACGTGGAG
CTGCCGGAGGGGATGAATAAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGCGGGCGGGTCAGGTTGCCGCAGTAGAGATAGCGTGTACGT
AATTCAGATCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTTCCTTCCTCCCT
TTCTAGATTGCCTTGATTGTCCGCTCTCCCGATGGAGAGGGGCTTTATGT
GGTGGCTGCTCAAGAAGGAGGGAAGCAGGCCGTGCTGTCCTACGTGTAGG
GAGGGAGGAAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGTTGGTTGGT
CTCGTCTACCGGCTCCGTCGGTTGTAAAGTTTCTTACTCATTCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCGC
AGCCTGAACTCCAAGACTCATAAACTCCGCCTAGCCCAGTCACTTTCCTC
CCTTTACCTCCCCTCCTCCAGCATCAACTTCGGTGCCTTCGGTACGTCTA
TCCCCTCCCTCCCTCCCTCCCTCCCCCTCTCCCCGGACGCAAAAGGAGGG
CATTTCTTTCCAGGCGACATCCTCGCTGTAACCACCTTTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCCCCTCCCTAGATGCTGAGGGACAGCACCTCTTC
CTCGGTGATGGTCACGAGAAAAATTTCCACTCGTGGATTGTCGCGGGCGC
CTTTGTCTTCCGCCGTCAACCAGGTAGGCAGGGAGGGAGGGAGGGAGGGA
AGCAGGGAAGGAGGGAGGGAGGGCGTATTTTTCCTCAATAGTTAACGCAT
CCATCTTTCTCATCTCAATTCCCCCCCCCGCCCTCTCTTTCTCTCTCCCT
CTCTCCCTCCCTCCTAATTTCCAAAGCAAACGACCTGGCCCTGACCTTTG
ATCCCCGCCATCCCGTCTAG
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Coding sequence (CDS) from alignment at chr26:593438..596357+

>NO26G01780.3 ID=NO26G01780.3|Name=NO26G01780.3|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr26:593438..596357+ (Nannochloropsis oceanica)
ATGCGTCTGTTGAAGCCCGACATGGTGGAAAAGAAGAAGTCGAACTTTTC
TACGCCAACCTCCACCCTCGGGATGGCTCAAGACATGGTGTATGATGTAG
GGCCTGTCGGACTCCGCCTCAAAGCCCTTGGAGATAATCCCATCATCAGC
ATCTCCAACGACGGCCTTAATATCTACGTCCTCCCCCGCGGCTTTGGAAA
AGGTCCGGATGGTGTCCTCGTCCTTGAACGGTTTCCCGCCTCGGCCCTCG
TGTACGAGATTCAAGATTTGGGTGACGAGGAGAGTAAGGCAGCTACCATC
GACCACGGCAGTGTCTGTCAAGACGGTGGCTCGGCGATGACTTTATCCGC
GAATGACGACTACCTCTACGTCGCCTGCCACCAGGAGGGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGGGAGGGAGGGCGG
GGGCAGGGGCATGTCCCTTTCATCAAGGTCTTCTCTCGACGGGTGACCAA
GACGGGAGGGGAGGGATGGAAGGAGGGAGGGAGGGATGGAGGGAGGGAAG
GAGGGAAGGAGGGAGGGAGGGAGGACGCGGGTCTCCGGTGGGTGGAGGAC
GTGGAGCTGCCGGAGGGGATGAATAAGATTGCCTTGATTGTCCGCTCTCC
CGATGGAGAGGGGCTTTATGTGGTGGCTGCTCAAGAAGGAGGGAAGCAGG
CCGTGCTGTCCTACGTCCTGAACTCCAAGACTCATAAACTCCGCCTAGCC
CAGTCACTTTCCTCCCTTTACCTCCCCTCCTCCAGCATCAACTTCGGTGC
CTTCGATGCTGAGGGACAGCACCTCTTCCTCGGTGATGGTCACGAGAAAA
ATTTCCACTCGTGGATTGTCGCGGGCGCCTTTGTCTTCCGCCGTCAACCA
GCAAACGACCTGGCCCTGACCTTTGATCCCCGCCATCCCGTCTAG
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Synonyms
Publications