NO25G01020, NO25G01020 (gene) Nannochloropsis oceanica

Overview
NameNO25G01020
Unique NameNO25G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length255
Alignment locationchr25:285929..286183 +

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Properties
Property NameValue
DescriptionRibonucleoprotein LSM
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:285929..286183 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR033871LSm5
IPR001163Ribonucl_LSM
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: EWM21598.1 (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 167.5 bits (423), Expect = 1.700e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 0 
Query:    1 MAGRLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPDD 84
            MAGRLLPLELVDKCIGSRLWVIMKGDQEL GTLKSFDDYVNMVLEDVTEYE+TPEG+VAHKLDQILLNGNNIAILVPGRSP+D
Sbjct:    1 MAGRLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPED 83
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: XP_023257229.1 (sm-like protein LSM5 [Seriola lalandi dorsalis])

HSP 1 Score: 138.7 bits (348), Expect = 8.600e-30
Identity = 60/82 (73.17%), Postives = 74/82 (90.24%), Query Frame = 0 
Query:    1 MAGRLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPD 83
            MA  +LPLEL+DKCIGSR+W++M+GD+EL GTL+ FDDYVNMVL+DVTEYE+TPEG+   KLDQILLNGNN+A+LVPG SP+
Sbjct:    1 MASAVLPLELIDKCIGSRIWIVMRGDKELVGTLRGFDDYVNMVLDDVTEYEITPEGKRVTKLDQILLNGNNVALLVPGGSPN 82
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BLAST of NO25G01020 vs. NCBI_GenBank
Match: KMZ74577.1 (U6 snRNA-associated Sm-like protein LSm5 [Zostera marina])

HSP 1 Score: 136.7 bits (343), Expect = 3.300e-29
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0 
Query:    4 RLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPD 83
            +LLP EL+D+CIGS++WVIMKGD+EL GTLK FD YVNMVLEDVTEYE+TPEGR   KLDQILLNGNNIAILVPG SPD
Sbjct:    7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITPEGRRITKLDQILLNGNNIAILVPGGSPD 85
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: XP_022034845.1 (sm-like protein LSM5 [Helianthus annuus] >XP_023759260.1 sm-like protein LSM5 [Lactuca sativa] >KVI12325.1 Like-Sm (LSM) domain-containing protein [Cynara cardunculus var. scolymus] >OTG28381.1 putative small nuclear ribonucleoprotein family protein [Helianthus annuus] >PLY88927.1 hypothetical protein LSAT_8X90161 [Lactuca sativa])

HSP 1 Score: 136.7 bits (343), Expect = 3.300e-29
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0 
Query:    4 RLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPD 83
            +LLP EL+D+CIGS++WVIMKGD+EL GTLK FD YVNMVLEDVTEYE+TPEGR   KLDQILLNGNNIAILVPG SPD
Sbjct:    7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITPEGRRITKLDQILLNGNNIAILVPGGSPD 85
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: OTG10412.1 (putative LSM domain-containing protein [Helianthus annuus])

HSP 1 Score: 136.7 bits (343), Expect = 3.300e-29
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0 
Query:    4 RLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPD 83
            +LLP EL+D+CIGS++WVIMKGD+EL GTLK FD YVNMVLEDVTEYE+TPEGR   KLDQILLNGNNIAILVPG SPD
Sbjct:   65 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITPEGRRITKLDQILLNGNNIAILVPGGSPD 143
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: XP_021987895.1 (sm-like protein LSM5 [Helianthus annuus])

HSP 1 Score: 136.7 bits (343), Expect = 3.300e-29
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0 
Query:    4 RLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPD 83
            +LLP EL+D+CIGS++WVIMKGD+EL GTLK FD YVNMVLEDVTEYE+TPEGR   KLDQILLNGNNIAILVPG SPD
Sbjct:    7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITPEGRRITKLDQILLNGNNIAILVPGGSPD 85
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: XP_010439778.1 (PREDICTED: sm-like protein LSM5 [Camelina sativa] >XP_010442339.1 PREDICTED: sm-like protein LSM5 isoform X1 [Camelina sativa])

HSP 1 Score: 136.3 bits (342), Expect = 4.300e-29
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0 
Query:    4 RLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPDD 84
            +LLP EL+D+CIGS++WVIMKGD+EL GTLK FD YVNMVLEDVTEYE+T EGR   KLDQILLNGNNIAILVPG SPDD
Sbjct:    7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDD 86
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: XP_010482156.1 (PREDICTED: sm-like protein LSM5 [Camelina sativa])

HSP 1 Score: 136.3 bits (342), Expect = 4.300e-29
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0 
Query:    4 RLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPDD 84
            +LLP EL+D+CIGS++WVIMKGD+EL GTLK FD YVNMVLEDVTEYE+T EGR   KLDQILLNGNNIAILVPG SPDD
Sbjct:    7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDD 86
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: ETO13672.1 (RNA binding protein [Reticulomyxa filosa])

HSP 1 Score: 135.2 bits (339), Expect = 9.600e-29
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 0 
Query:    1 MAGRLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSP 82
            MA +LLPLEL+DKCIGSR+W+IMKGD+E+ G L+ FDDYVNMVLEDVTEYE+TPEG+   KLD ILLNGNN+ ++VPG +P
Sbjct:   80 MASKLLPLELIDKCIGSRIWIIMKGDKEMVGILRGFDDYVNMVLEDVTEYEITPEGKKVTKLDSILLNGNNVCLMVPGGAP 160
[Close]
BLAST of NO25G01020 vs. NCBI_GenBank
Match: XP_008915958.1 (U6 snRNA-associated Sm-like protein LSm5 [Phytophthora parasitica INRA-310] >ETI54524.1 U6 snRNA-associated Sm-like protein LSm5 [Phytophthora parasitica P1569] >ETK94377.1 U6 snRNA-associated Sm-like protein LSm5 [Phytophthora parasitica] >ETM00867.1 U6 snRNA-associated Sm-like protein LSm5 [Phytophthora parasitica] >ETM98722.1 U6 snRNA-associated Sm-like protein LSm5 [Phytophthora parasitica INRA-310] >ETO83276.1 U6 snRNA-associated Sm-like protein LSm5 [Phytophthora parasitica P1976] >ETP24355.1 U6 snRNA-associated Sm-like protein LSm5 [Phytophthora parasitica CJ01A1] >ETP52329.1 U6 snRNA-associated Sm-like protein LSm5 [Phytophthora parasitica P10297])

HSP 1 Score: 134.4 bits (337), Expect = 1.600e-28
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 0 
Query:    3 GRLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSP 82
            GR+LPLEL+DKCIGS+LW++MKGD+E  GTL+ FDDYVNMVL+DVTEYE+TPEG+   KLDQ+LLNGNN+ +LVPG  P
Sbjct:   26 GRILPLELIDKCIGSKLWIVMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEGKREVKLDQVLLNGNNVCLLVPGGFP 104
The following BLAST results are available for this feature:
BLAST of NO25G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21598.11.700e-3895.18ribonucleoprotein LSM [Nannochloropsis gaditana][more]
XP_023257229.18.600e-3073.17sm-like protein LSM5 [Seriola lalandi dorsalis][more]
KMZ74577.13.300e-2981.01U6 snRNA-associated Sm-like protein LSm5 [Zostera ... [more]
XP_022034845.13.300e-2981.01sm-like protein LSM5 [Helianthus annuus] >XP_02375... [more]
OTG10412.13.300e-2981.01putative LSM domain-containing protein [Helianthus... [more]
XP_021987895.13.300e-2981.01sm-like protein LSM5 [Helianthus annuus][more]
XP_010439778.14.300e-2980.00PREDICTED: sm-like protein LSM5 [Camelina sativa] ... [more]
XP_010482156.14.300e-2980.00PREDICTED: sm-like protein LSM5 [Camelina sativa][more]
ETO13672.19.600e-2971.60RNA binding protein [Reticulomyxa filosa][more]
XP_008915958.11.600e-2872.15U6 snRNA-associated Sm-like protein LSm5 [Phytopht... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL045nonsL045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR043ncniR043Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004328NSK004328Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G01020.1NO25G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603253gene_8587Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Lsm5gene8810Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G01020.1NO25G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G01020 ID=NO25G01020|Name=NO25G01020|organism=Nannochloropsis oceanica|type=gene|length=255bp
ATGGCAGGCCGTCTCTTGCCCCTGGAGCTCGTTGACAAGTGCATTGGCTC
CCGTCTGTGGGTTATCATGAAGGGGGACCAAGAACTTTTTGGGACTCTCA
AGAGCTTCGATGACTACGTAAACATGGTGCTGGAGGACGTGACTGAGTAC
GAGATGACGCCAGAGGGGAGGGTTGCGCATAAACTGGACCAGATTTTGTT
GAATGGGAACAACATTGCCATATTGGTACCCGGACGAAGCCCGGATGATG
CATGA
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protein sequence of NO25G01020.1

>NO25G01020.1-protein ID=NO25G01020.1-protein|Name=NO25G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MAGRLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEY
EMTPEGRVAHKLDQILLNGNNIAILVPGRSPDDA*
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Synonyms
Publications