Lsm5, gene8810 (gene) Nannochloropsis gaditana

Overview
NameLsm5
Unique Namegene8810
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:295743..296313 -

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100012g36
Gene biotypeprotein_coding
GeneLsm5
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:295743..296313 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0006950response to stress
GO:0009719response to endogenous stimulus
GO:0006139nucleobase-containing compound metabolic process
GO:0009628response to abiotic stimulus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL073ngnoL073Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01020NO25G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna9084rna9084-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna9084rna9084Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna9084

>rna9084-protein ID=rna9084-protein|Name=rna9084|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MAGRLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEY
EVTPEGKVAHKLDQILLNGNNIAILVPGRSPEDGRLVRFVGRREHDVHLM
KCQFLWECVEATATRFPTLDMVLPGLNWGGSPRICSILRKNRQRHTA
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Synonyms
Publications