NO25G01020.1, NO25G01020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G01020.1
Unique NameNO25G01020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length255
Alignment locationchr25:285929..286183 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:285929..286183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G01020.1 vs.
Match: EWM21598.1 (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 167.5 bits (423), Expect = 1.700e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 0 
Query:    1 MAGRLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEYEMTPEGRVAHKLDQILLNGNNIAILVPGRSPDD 84
            MAGRLLPLELVDKCIGSRLWVIMKGDQEL GTLKSFDDYVNMVLEDVTEYE+TPEG+VAHKLDQILLNGNNIAILVPGRSP+D
Sbjct:    1 MAGRLLPLELVDKCIGSRLWVIMKGDQELVGTLKSFDDYVNMVLEDVTEYEVTPEGKVAHKLDQILLNGNNIAILVPGRSPED 83
The following BLAST results are available for this feature:
BLAST of NO25G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21598.11.700e-3895.18ribonucleoprotein LSM [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G01020NO25G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G01020.1NO25G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G01020.1.cds1NO25G01020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G01020.1 ID=NO25G01020.1|Name=NO25G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=255bp
ATGGCAGGCCGTCTCTTGCCCCTGGAGCTCGTTGACAAGTGCATTGGCTC
CCGTCTGTGGGTTATCATGAAGGGGGACCAAGAACTTTTTGGGACTCTCA
AGAGCTTCGATGACTACGTAAACATGGTGCTGGAGGACGTGACTGAGTAC
GAGATGACGCCAGAGGGGAGGGTTGCGCATAAACTGGACCAGATTTTGTT
GAATGGGAACAACATTGCCATATTGGTACCCGGACGAAGCCCGGATGATG
CATGA
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protein sequence of NO25G01020.1

>NO25G01020.1-protein ID=NO25G01020.1-protein|Name=NO25G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MAGRLLPLELVDKCIGSRLWVIMKGDQELFGTLKSFDDYVNMVLEDVTEY
EMTPEGRVAHKLDQILLNGNNIAILVPGRSPDDA*
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mRNA from alignment at chr25:285929..286183+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G01020.1 ID=NO25G01020.1|Name=NO25G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=255bp|location=Sequence derived from alignment at chr25:285929..286183+ (Nannochloropsis oceanica)
ATGGCAGGCCGTCTCTTGCCCCTGGAGCTCGTTGACAAGTGCATTGGCTC
CCGTCTGTGGGTTATCATGAAGGGGGACCAAGAACTTTTTGGGACTCTCA
AGAGCTTCGATGACTACGTAAACATGGTGCTGGAGGACGTGACTGAGTAC
GAGATGACGCCAGAGGGGAGGGTTGCGCATAAACTGGACCAGATTTTGTT
GAATGGGAACAACATTGCCATATTGGTACCCGGACGAAGCCCGGATGATG
CATGA
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Coding sequence (CDS) from alignment at chr25:285929..286183+

>NO25G01020.1 ID=NO25G01020.1|Name=NO25G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at chr25:285929..286183+ (Nannochloropsis oceanica)
ATGGCAGGCCGTCTCTTGCCCCTGGAGCTCGTTGACAAGTGCATTGGCTC
CCGTCTGTGGGTTATCATGAAGGGGGACCAAGAACTTTTTGGGACTCTCA
AGAGCTTCGATGACTACGTAAACATGGTGCTGGAGGACGTGACTGAGTAC
GAGATGACGCCAGAGGGGAGGGTTGCGCATAAACTGGACCAGATTTTGTT
GAATGGGAACAACATTGCCATATTGGTACCCGGACGAAGCCCGGATGATG
CATGA
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Synonyms
Publications