NO25G00240, NO25G00240 (gene) Nannochloropsis oceanica
|
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO25G00240 vs. NCBI_GenBank
Match: CBJ26067.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 148.7 bits (374), Expect = 2.300e-32 Identity = 77/157 (49.04%), Postives = 99/157 (63.06%), Query Frame = 0
Query: 81 ISTPGAHSLTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDLDFNTHRFDFAGNGDSEGDFRYTGYDQE---------GLRSRGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDG 229
++ PG L + N + G + G+L+VK S S+ V+CHGLCSS E + + +L NT+RFDFAG G S GD+RY GYD+E LR GWNV C+LGHSKGA AVLRY T+ DVP V ++A RFD S+ P SRFT EQ +E+ G
Sbjct: 58 VTVPGKSQLVVRNEEEGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSRELSENTYRFDFAGCGQSGGDWRYAGYDKELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWNQLEETG 214
BLAST of NO25G00240 vs. NCBI_GenBank
Match: PTQ40868.1 (hypothetical protein MARPO_0037s0049 [Marchantia polymorpha]) HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19 Identity = 60/161 (37.27%), Postives = 95/161 (59.01%), Query Frame = 0
Query: 81 ISTPG-AHSLTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKET---GIIRTLGEDLDFNTHRFDFAGNGDSEGDFRYTGYDQ---------EGLRSRGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDG 229
+ PG A ++T++N + G K+ G+ + D S LCV+CHG SSK++ G++ + F++ RFDF+GNG+SEG+F Y Y + E RS+G + I+GHSKG + VL Y+S YGDV V +++ RFD + RF ++ +E++G
Sbjct: 101 VPPPGIAKNVTIIN-QDGEKLVGV--IDDTGSKELCVLCHGFRSSKKSTTLGVVASTLVTAGFSSFRFDFSGNGESEGEFAYGNYWKEVEDLRAVIEYWRSQGREITAIIGHSKGGNVVLLYASKYGDVSTVVNVSGRFDLNIGQLERFGEAGMKTLEQEG 258
BLAST of NO25G00240 vs. NCBI_GenBank
Match: EFJ10240.1 (hypothetical protein SELMODRAFT_447411 [Selaginella moellendorffii]) HSP 1 Score: 103.6 bits (257), Expect = 8.400e-19 Identity = 67/167 (40.12%), Postives = 95/167 (56.89%), Query Frame = 0
Query: 75 MVVQAPISTPGAH-SLTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKE-TGIIRTLG--EDLDFNTHRFDFAGNGDSEGDFRYTGYDQE---------GLRSRGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDG 229
M A S P + S +V + G K+ GIL D S LC++CHGL SSKE TG++ + +T+RFDF+GNG+SEG+F Y GY QE R++ V CI+GHSKG +AVL YSS YGDVP V + + R + SR + ++ ++++G
Sbjct: 1 MAAPAVESGPSSRKSRVVVPNFQGKKLVGILD--DTGSPDLCILCHGLRSSKESTGLVVLANALAEAGLSTYRFDFSGNGESEGEFSYGGYWQEVEDLRAVVLHWRAQTRLVNCIIGHSKGGNAVLLYSSKYGDVPLVVNCSGRGLLKRGLKSRLGSDFMERLDREG 165
BLAST of NO25G00240 vs. NCBI_GenBank
Match: EFJ12530.1 (hypothetical protein SELMODRAFT_123787 [Selaginella moellendorffii]) HSP 1 Score: 101.7 bits (252), Expect = 3.200e-18 Identity = 64/153 (41.83%), Postives = 88/153 (57.52%), Query Frame = 0
Query: 88 SLTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKE-TGIIRTLG--EDLDFNTHRFDFAGNGDSEGDFRYTGYDQEGLRSRG----WN-----VACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDG 229
S +V + G K+ GIL D S LC++CHGL SSKE TG++ + +T+RFDF+GNG+SEG+F Y GY QE R W V CI+GHSKG +AVL YSS YGDVP V + + R + SR + + ++++G
Sbjct: 15 SRVVVPNFQGKKLVGILD--DTGSPDLCILCHGLRSSKESTGLVVLANALAEAGLSTYRFDFSGNGESEGEFSYGGYWQEVEDLRAVVLHWRAHTRLVNCIIGHSKGGNAVLLYSSKYGDVPLVVNCSGRGLLKRGLKSRLGSDFMGRLDREG 165
BLAST of NO25G00240 vs. NCBI_GenBank
Match: XP_002986321.2 (putative uncharacterized protein YDL057W [Selaginella moellendorffii] >XP_024516060.1 putative uncharacterized protein YDL057W [Selaginella moellendorffii]) HSP 1 Score: 101.7 bits (252), Expect = 3.200e-18 Identity = 64/153 (41.83%), Postives = 88/153 (57.52%), Query Frame = 0
Query: 88 SLTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKE-TGIIRTLG--EDLDFNTHRFDFAGNGDSEGDFRYTGYDQEGLRSRG----WN-----VACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDG 229
S +V + G K+ GIL D S LC++CHGL SSKE TG++ + +T+RFDF+GNG+SEG+F Y GY QE R W V CI+GHSKG +AVL YSS YGDVP V + + R + SR + + ++++G
Sbjct: 57 SRVVVPNFQGKKLVGILD--DTGSPDLCILCHGLRSSKESTGLVVLANALAEAGLSTYRFDFSGNGESEGEFSYGGYWQEVEDLRAVVLHWRAHTRLVNCIIGHSKGGNAVLLYSSKYGDVPLVVNCSGRGLLKRGLKSRLGSDFMGRLDREG 207
BLAST of NO25G00240 vs. NCBI_GenBank
Match: XP_007224057.1 (uncharacterized protein LOC18791597 [Prunus persica] >ONI33204.1 hypothetical protein PRUPE_1G410900 [Prunus persica]) HSP 1 Score: 100.1 bits (248), Expect = 9.300e-18 Identity = 64/170 (37.65%), Postives = 92/170 (54.12%), Query Frame = 0
Query: 75 MVVQAPISTPGAHSL----TLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDLD---FNTHRFDFAGNGDSEGDFRYTGYDQEG---------LRSRGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDG 229
M V P STP ++ ++ +K G K+ GIL D S L V+CHG+ SSKE + L L + RFDFAGNG+SEG FRY Y +E R + + V ++GHSKG +AVL Y++ Y DV KV ++A RF+ + R + L+ +++DG
Sbjct: 1 MSVTRPTSTPKQPAIQQRRVVIENKHGEKLVGIL--HDTGSKELVVLCHGIHSSKERIPMVNLAAVLQREGISAFRFDFAGNGESEGSFRYGHYRREADDLRAVLQHFRVQNYVVTAVVGHSKGGNAVLLYAAKYNDVHKVVNIAGRFNLERGIEGRLGKDFLRRIKQDG 168
BLAST of NO25G00240 vs. NCBI_GenBank
Match: XP_024401926.1 (uncharacterized protein LOC112295040 isoform X2 [Physcomitrella patens]) HSP 1 Score: 99.4 bits (246), Expect = 1.600e-17 Identity = 59/153 (38.56%), Postives = 91/153 (59.48%), Query Frame = 0
Query: 89 LTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDL---DFNTHRFDFAGNGDSEGDFRYTGY--DQEGLRS-------RGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQ-LQAMEKDG 229
++++NS+ G K+ G ++D S LCV+CHG SSKE ++ + L F+T+RFDF GNG+S G+F Y Y + E +RS RGW V ++GHSKG +AVL Y+S Y DV + +++ RFD + R + +Q +++DG
Sbjct: 6 VSILNSQ-GLKLVG--ELEDTGSKDLCVLCHGFQSSKELPTFVSVSKALTESGFSTYRFDFTGNGESNGEFAYGNYWREAEDIRSVVNYWRYRGWRVISLIGHSKGGNAVLLYASKYKDVASIVNISGRFDLRRGIKGRLGGSKGVQKLKEDG 155
BLAST of NO25G00240 vs. NCBI_GenBank
Match: XP_022147672.1 (uncharacterized protein LOC111016540 [Momordica charantia]) HSP 1 Score: 99.4 bits (246), Expect = 1.600e-17 Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 0
Query: 85 GAHSLTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDLD---FNTHRFDFAGNGDSEGDFRYTGYDQEG---------LRSRGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDG 229
G H +V +K G K+ GIL D S+ + ++CHG S+KE I L + L+ + RFDF+GNG+SEG F+Y Y+ E R+ G ++ ILGHSKG VL Y+S Y + V +++ R+D + R E +Q +EK+G
Sbjct: 11 GQHQKVIVPNKNGEKLVGIL--HDTGSADVVILCHGFRSTKENDISVNLAKTLENEGISAFRFDFSGNGESEGSFKYGNYNGEADDLHAIIQHWRAAGRVISAILGHSKGGDVVLLYASKYHGISFVINVSGRYDLKRGIKERLGDEFMQRIEKEG 164
BLAST of NO25G00240 vs. NCBI_GenBank
Match: XP_024401922.1 (uncharacterized protein LOC112295040 isoform X1 [Physcomitrella patens] >PNR59882.1 hypothetical protein PHYPA_002674 [Physcomitrella patens]) HSP 1 Score: 99.4 bits (246), Expect = 1.600e-17 Identity = 59/153 (38.56%), Postives = 91/153 (59.48%), Query Frame = 0
Query: 89 LTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDL---DFNTHRFDFAGNGDSEGDFRYTGY--DQEGLRS-------RGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQ-LQAMEKDG 229
++++NS+ G K+ G ++D S LCV+CHG SSKE ++ + L F+T+RFDF GNG+S G+F Y Y + E +RS RGW V ++GHSKG +AVL Y+S Y DV + +++ RFD + R + +Q +++DG
Sbjct: 33 VSILNSQ-GLKLVG--ELEDTGSKDLCVLCHGFQSSKELPTFVSVSKALTESGFSTYRFDFTGNGESNGEFAYGNYWREAEDIRSVVNYWRYRGWRVISLIGHSKGGNAVLLYASKYKDVASIVNISGRFDLRRGIKGRLGGSKGVQKLKEDG 182
BLAST of NO25G00240 vs. NCBI_GenBank
Match: XP_024401934.1 (uncharacterized protein LOC112295040 isoform X3 [Physcomitrella patens]) HSP 1 Score: 99.4 bits (246), Expect = 1.600e-17 Identity = 59/153 (38.56%), Postives = 91/153 (59.48%), Query Frame = 0
Query: 89 LTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDL---DFNTHRFDFAGNGDSEGDFRYTGY--DQEGLRS-------RGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQ-LQAMEKDG 229
++++NS+ G K+ G ++D S LCV+CHG SSKE ++ + L F+T+RFDF GNG+S G+F Y Y + E +RS RGW V ++GHSKG +AVL Y+S Y DV + +++ RFD + R + +Q +++DG
Sbjct: 33 VSILNSQ-GLKLVG--ELEDTGSKDLCVLCHGFQSSKELPTFVSVSKALTESGFSTYRFDFTGNGESNGEFAYGNYWREAEDIRSVVNYWRYRGWRVISLIGHSKGGNAVLLYASKYKDVASIVNISGRFDLRRGIKGRLGGSKGVQKLKEDG 182 The following BLAST results are available for this feature:
BLAST of NO25G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO25G00240 ID=NO25G00240|Name=NO25G00240|organism=Nannochloropsis oceanica|type=gene|length=3485bpback to top protein sequence of NO25G00240.1 >NO25G00240.1-protein ID=NO25G00240.1-protein|Name=NO25G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bpback to top protein sequence of NO25G00240.2 >NO25G00240.2-protein ID=NO25G00240.2-protein|Name=NO25G00240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=232bpback to top protein sequence of NO25G00240.3 >NO25G00240.3-protein ID=NO25G00240.3-protein|Name=NO25G00240.3|organism=Nannochloropsis oceanica|type=polypeptide|length=445bpback to top Synonyms
Publications
|