NO25G00240.3, NO25G00240.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G00240.3
Unique Name	NO25G00240.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2592
Alignment location	chr25:63025..66509 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:63025..66509 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO25G00240.3 vs.
Match: CBJ26067.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 194.1 bits (492), Expect = 9.100e-46
Identity = 101/201 (50.25%), Postives = 132/201 (65.67%), Query Frame = 0

Query:   65 SSRKSSSSSVMVV--QAPISTPGAHSLTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDLDFNTHRFDFAGNGDSEGDFRYTGYDQEVEDLRAVVEGLRSRGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDGFFLWNVRGRDYKVTKEDFKERDSVSI 264
            SS  +SSS+V        ++ PG   L + N + G  + G+L+VK   S S+ V+CHGLCSS E  +   +  +L  NT+RFDFAG G S GD+RY GYD+E+ DLRAVV  LR  GWNV C+LGHSKGA AVLRY  T+ DVP V ++A RFD S+ P SRFT EQ   +E+ G F WNVRG D  + K DF+ER ++++
Sbjct:   40 SSTSTSSSAVQPAGEAGAVTVPGKSQLVVRNEEEGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSRELSENTYRFDFAGCGQSGGDWRYAGYDKELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWNQLEETGSFEWNVRGEDLTINKSDFEERAALNM 240

The following BLAST results are available for this feature:

BLAST of NO25G00240.3 vs.

BLAST of NO25G00240.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBJ26067.1	9.100e-46	50.25	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO25G00240	NO25G00240	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO25G00240.3	NO25G00240.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO25G00240.3.cds1	NO25G00240.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00240.3.cds2	NO25G00240.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00240.3.cds3	NO25G00240.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00240.3.cds4	NO25G00240.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00240.3.cds5	NO25G00240.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00240.3.cds6	NO25G00240.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00240.3.cds7	NO25G00240.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr25:63025..66509+
coding sequence from alignment at chr25:63025..66509+

mRNA sequence

>NO25G00240.3 ID=NO25G00240.3|Name=NO25G00240.3|organism=Nannochloropsis oceanica|type=mRNA|length=2592bp
TCCTCCTTCCCTTTCTCCCTGTCCCCCTCCTCCTCCTCCTCCTCCTCCCG
CTCGTCGTCGCCATCCCGCCCTTCCCCCTCTCCTGCGTCAGCTGTCGGTG
AAGACTTCCTCCTCCAGCGGCTACCATGACCCATTGCATCAGTAGGGGTT
GACGTGCAGAGATGAGGGTCCGACCCTCCCTCGCCCTCCTCCTTTCCCTC
CCTCCCCATCCAAGTCTCCAACAAAGCTGTAGATGACGGCAGGGGTCGCG
TCCGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTCCTC
CTCCTTCGGCTTCTGCTTCTGGTGCCATTACCATTGCCAGATAGTGATGT
TGGTGAGTTTGAGGGCAAGGGAGGCCTGGTGAGGGAGATAGAGAGGGGTT
GGGATGAAGAAGGGCTTAGCCCACCTCCTCCTTCTTCTCCTCCTCCTTCT
TCTCCTCTTCTTCTTCTTCCTTCCTCTTCTCCCCGTCCAGTACCTCCCCC
TCTTTCCCCTCCTCCTCCTCTTTCCCCATGCTTCAGGATCTGTCCTCCTT
CCTCCCGCCGCCTTGCTCTACCCCTCGTGTGGCTGCTGCCCTCCGCTCGG
GCAGCCTCAGCTTTGCTACCGCTACTTGCTGCTTTCATCGTCGTCGTCGC
GGTCGTCCGTGATACTGGTGGCGGCGCAGCGAGCTCATCCATCCTCCTGA
TCCTTGGATGCTTCTTCCTCGCTCGAGTTGTGGTGTCACTATTACAAGAG
GTTCCAGCAGCAGCAGCTGCGGCAGCAGGAGGAAGGGGGCAGGAGGCTAG
GTGAGCGCAGTACTACTTGGAAAAGAACAAAAAAAAAAGCCCCAGCGGCA
TGTACGAGAGCGCCGATCTCCGCTATGGGAGTGTCTACCTGTGATGCTGG
TGGGGTGATGGGCTTGATTCAGTAGGTAGCTGATCTCTCTCGCTAGGTGC
CAGCGGTGCGGGGCTGCCCCGTGACACAAACCTCGCCCCTTTATCTCCAA
CTTGAAATTCCACAGCGGATTCGTGCCTCCCCTCCCCTGATACGTGATAA
GCGAGAGCAGCCTGCTGCCGACTGGCATTCACAGTAAAACACTTTATACA
CAACACAGAAAAGACACGCGCAGCCACTGCTGCACACGGCACTCGGACAC
CAGCAGCTACACTTCGAGGCCCCAGACCAGCTGCCTTCCAGGCTGCTCTT
CTTGTCCTCGGTGATAGCCTCCTCGCTCCCGTACTTGACCCTTGTCAACT
CCTCCATGCTATCCATCCTGAATTGTATTTCCCTTCTCGCCCTTGTCTTC
GTCCTCTACTCAGCCTCTCTCGTCTCTGTAGATAGTGTCAGTAGCAACAA
AGCCAAGCATCCTTCTTTTCTTCCCTGCCGTCCTTCCCTCCCTCCGGCCA
ACCCATACCTCGCTGTACCCAGCAGAGCACGAGGGCGTTCTAGAAAGAGC
AGTCGGAAAAGCAGCAGCAGCAGCGTCATGGTAGTACAAGCACCTATCTC
CACGCCTGGCGCTCATTCTCTCACACTTGTCAACTCCAAGACCGGAAACA
AAGTTGCAGGCATCCTTTCTGTCAAGGACCCTGCTTCCTCCTCCCTCTGT
GTAATCTGCCATGGTCTCTGCAGCTCCAAGGAGACAGGCATCATCCGCAC
CCTAGGCGAGGATTTAGACTTCAATACCCACCGATTTGATTTCGCCGGCA
ATGGAGACAGCGAAGGTGACTTCCGCTACACGGGCTATGACCAAGAGGTG
GAGGACCTGCGGGCTGTGGTGGAAGGCCTGCGCTCGCGAGGGTGGAACGT
AGCTTGTATCCTGGGCCACTCGAAGGGGGCGCATGCCGTCCTCCGTTACT
CCAGCACCTACGGCGACGTTCCCAAGGTCTTCTCTCTGGCGGCGCGCTTC
GACTTTAGCCAACAGCCGGCCAGCCGTTTCACGCCCGAGCAGCTGCAGGC
TATGGAGAAGGACGGCTTCTTCCTGTGGAATGTCCGAGGGAGGGACTATA
AAGTCACCAAAGAAGACTTCAAGGAGCGAGACAGCGTGAGTATTGGAGGG
AGGGAGGGAAGGCAGGGGGAGGGAGGGGAAGTCAGTGAAACGGAAGCGAG
AAGTGGGGGGGATGAAATTCAGGTCGAGGAGAATACCACAACGACTGTAA
CAAATTCACTCATCTTCCCCCTCCCTGCCTCTCTCCCTCCCTTCCTCCTT
GGCGTAGGTGGACATGGTTCCCCTCCTCGAGAGAGTGAAGACCACGCACC
CGTCTGTCCCTCCCTTCCTCCTCCTCGCCCACGGAGAAGCAGACGAGACA
ATCCCTGTCAAGGACGTCGACTCCATCGCCGCAATCCTGGGTCCAAGGTG
AGCCCTCCCTCCCTGCCCCCCCTCTCATTCCCTCCCTCATCCTTCTCTGA
ATCAATCCTTTACTGCCTCACTCCCTCCCTCTCCCCCTCTCCCCCTCAGT
TTCTGCCGCGTGGTCCGTATCCCCGGGGCCGACCACTTTTACCGGCGGCC
GGAAGACGCCCAGGCTGTCGTTCAAGCCGCCTCCCGCTTCTTGAAAGAGG
GGTAGAAGGAGGGGTGGAGACTCGTGTGGAGGAGATGTAAAA

protein sequence of NO25G00240.3

>NO25G00240.3-protein ID=NO25G00240.3-protein|Name=NO25G00240.3|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MLSILNCISLLALVFVLYSASLVSVDSVSSNKAKHPSFLPCRPSLPPANP
YLAVPSRARGRSRKSSRKSSSSSVMVVQAPISTPGAHSLTLVNSKTGNKV
AGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDLDFNTHRFDFAGNG
DSEGDFRYTGYDQEVEDLRAVVEGLRSRGWNVACILGHSKGAHAVLRYSS
TYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDGFFLWNVRGRDYKV
TKEDFKERDSVSIGGREGRQGEGGEVSETEARSGGDEIQVEENTTTTVTN
SLIFPLPASLPPFLLGVGGHGSPPRESEDHAPVCPSLPPPRPRRSRRDNP
CQGRRLHRRNPGSKVSPPSLPPLSFPPSSFSESILYCLTPSLSPSPPQFL
PRGPYPRGRPLLPAAGRRPGCRSSRLPLLERGVEGGVETRVEEM*

mRNA from alignment at chr25:63025..66509+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO25G00240.3 ID=NO25G00240.3|Name=NO25G00240.3|organism=Nannochloropsis oceanica|type=mRNA|length=3485bp|location=Sequence derived from alignment at chr25:63025..66509+ (Nannochloropsis oceanica)
TCCTCCTTCCCTTTCTCCCTGTCCCCCTCCTCCTCCTCCTCCTCCTCCCG
CTCGTCGTCGCCATCCCGCCCTTCCCCCTCTCCTGCGTCAGCTGTCGGTG
AAGACTTCCTCCTCCAGCGGCTACCATGACCCATTGCATCAGTAGGGGTT
GACGTGCAGAGATGAGGGTCCGACCCTCCCTCGCCCTCCTCCTTTCCCTC
CCTCCCCATCCAAGTCTCCAACAAAGCTGTAGATGACGGCAGGGGTCGCG
TCCGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTCCTC
CTCCTTCGGCTTCTGCTTCTGGTGCCATTACCATTGCCAGATAGTGATGT
TGGTGAGTTTGAGGGCAAGGGAGGCCTGGTGAGGGAGATAGAGAGGGGTT
GGGATGAAGAAGGGCTTAGCCCACCTCCTCCTTCTTCTCCTCCTCCTTCT
TCTCCTCTTCTTCTTCTTCCTTCCTCTTCTCCCCGTCCAGTACCTCCCCC
TCTTTCCCCTCCTCCTCCTCTTTCCCCATGCTTCAGGATCTGTCCTCCTT
CCTCCCGCCGCCTTGCTCTACCCCTCGTGTGGCTGCTGCCCTCCGCTCGG
GCAGCCTCAGCTTTGCTACCGCTACTTGCTGCTTTCATCGTCGTCGTCGC
GGTCGTCCGTGATACTGGTGGCGGCGCAGCGAGCTCATCCATCCTCCTGA
TCCTTGGATGCTTCTTCCTCGCTCGAGTTGTGGTGTCACTATTACAAGAG
GTTCCAGCAGCAGCAGCTGCGGCAGCAGGAGGAAGGGGGCAGGAGGCTAG
GTGAGCGCAGTACTACTTGGAAAAGAACAAAAAAAAAAGCCCCAGCGGCA
TGTACGAGAGCGCCGATCTCCGCTATGGGAGTGTCTACCTGTGATGCTGG
TGGGGTGATGGGCTTGATTCAGTAGGTAGCTGATCTCTCTCGCTAGGTGC
CAGCGGTGCGGGGCTGCCCCGTGACACAAACCTCGCCCCTTTATCTCCAA
CTTGAAATTCCACAGCGGATTCGTGCCTCCCCTCCCCTGATACGTGATAA
GCGAGAGCAGCCTGCTGCCGACTGGCATTCACAGTAAAACACTTTATACA
CAACACAGAAAAGACACGCGCAGCCACTGCTGCACACGGCACTCGGACAC
CAGCAGCTACACTTCGAGGCCCCAGACCAGCTGCCTTCCAGGCTGCTCTT
CTTGTCCTCGGTGATAGCCTCCTCGCTCCCGTACTTGACCCTTGTCAACT
CCTCCATGCTATCCATCCTGAATTGTATTTCCCTTCTCGCCCTTGTCTTC
GTCCTCTACTCAGCCTCTCTCGTCTCTGTAGATAGTGTCAGTAGCAACAA
AGCCAAGCATCCTTCTTTTCTTCCCTGCCGTCCTTCCCTCCCTCCGGCCA
ACCCATACCTCGCTGTACCCAGCAGAGCACGAGGGCGTTCTAGAAAGAGC
AGTCGGAAAAGCAGCAGCAGCAGCGTCATGGTAGTACAAGCACCTATCTC
CACGCCTGGGTAGGCACTTTCACTCGAGAGACCTGCAGCCATCCATTGCC
CCGCCCTCCGTCCCTCCCTCTTCCTCAAAATACCCCCCAACCATCTCCTC
ACCTTTCCGCCCTTCCTCTATCCCTCCCTCCATCCCTACTCTAGCGCTCA
TTCTCTCACACTTGTCAACTCCAAGACCGGAAACAAAGTTGCAGGCATCC
TTTCTGTCAAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGGGATGAGGGGGAGAAATGAAAGCTATGGAGAGGTGAACGCGAGGAA
AAGAAAAGTCAGATTACAATGAAGAGAAACTCAGGCGTGCCGTGCTTTCT
TGTTATTTCCCCATCCATCACACTACACTCTCCGTCTTCCTTCCCTCTCT
CCCTCCCTCCCTCCCTCCCTCACCCAGGACCCTGCTTCCTCCTCCCTCTG
TGTAATCTGCCATGGTCTCTGCAGCTCCAAGGAGACAGGCATCATCCGCA
CCCTAGGCGAGGATTTAGACTTCAATACCCACCGGTACGCCAGTCCAGTC
CCTCCTATTTCCCTCCTTCGTCCTCGTTCGCCTTCTGGTGCTTCCCTTTC
ACGTCCTCTCCTTCCTTCCCCCTATCCCTCCCTCCCTCCTCACCCTCCCT
CCCTTCCTCTCAGATTTGATTTCGCCGGCAATGGAGACAGCGAAGGTGAC
TTCCGCTACACGGGCTATGACCAAGAGGTGGAGGACCTGCGGGCTGTGGT
GGAAGTGAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCCCCTCCC
TCCCTCTCCTGACCACTCTGAAGGACTCAAACATGCGCCATTCCCTCTTT
TCCTCCCTCCCTTCCTTCCCCAGGGCCTGCGCTCGCGAGGGTGGAACGTA
GCTTGTATCCTGGGCCACTCGAAGGGGGCGCATGCCGTCCTCCGTTACTC
CAGCACCTACGGCGACGTTCCCAAGGTAGGACGAAACTACCCTCCCTCCC
TCCATCCCTCCTTCCCCTTCCTCCCTCCCACTCATCCCCCCCCTCCTCCC
CCCAGGTCTTCTCTCTGGCGGCGCGCTTCGACTTTAGCCAACAGCCGGCC
AGCCGTTTCACGCCCGAGCAGCTGCAGGCTATGGAGAAGGACGGGTGCGA
AGGATGATGGGGGGGAAGGGAAGGAGGGAGGGAATGAAGTCTCCCCTGTT
CGAGCCAGTATTAAGTCTGCCCTTGTCACTCCTGCCATCTGCTTGTCTGT
CGTTCTACACGGAGAGACAGACAAAAAGCGGTTTCCTCCCTGTGCCCGTC
TCGTATTCACTCCCTCTCGCCCTCCCCTCCCTCCCTCCCTCCTTTCCTGC
CTCCGTAGCTTCTTCCTGTGGAATGTCCGAGGGAGGGACTATAAAGTCAC
CAAAGAAGACTTCAAGGAGCGAGACAGCGTGAGTATTGGAGGGAGGGAGG
GAAGGCAGGGGGAGGGAGGGGAAGTCAGTGAAACGGAAGCGAGAAGTGGG
GGGGATGAAATTCAGGTCGAGGAGAATACCACAACGACTGTAACAAATTC
ACTCATCTTCCCCCTCCCTGCCTCTCTCCCTCCCTTCCTCCTTGGCGTAG
GTGGACATGGTTCCCCTCCTCGAGAGAGTGAAGACCACGCACCCGTCTGT
CCCTCCCTTCCTCCTCCTCGCCCACGGAGAAGCAGACGAGACAATCCCTG
TCAAGGACGTCGACTCCATCGCCGCAATCCTGGGTCCAAGGTGAGCCCTC
CCTCCCTGCCCCCCCTCTCATTCCCTCCCTCATCCTTCTCTGAATCAATC
CTTTACTGCCTCACTCCCTCCCTCTCCCCCTCTCCCCCTCAGTTTCTGCC
GCGTGGTCCGTATCCCCGGGGCCGACCACTTTTACCGGCGGCCGGAAGAC
GCCCAGGCTGTCGTTCAAGCCGCCTCCCGCTTCTTGAAAGAGGGGTAGAA
GGAGGGGTGGAGACTCGTGTGGAGGAGATGTAAAA

Coding sequence (CDS) from alignment at chr25:63025..66509+

>NO25G00240.3 ID=NO25G00240.3|Name=NO25G00240.3|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr25:63025..66509+ (Nannochloropsis oceanica)
ATGCTATCCATCCTGAATTGTATTTCCCTTCTCGCCCTTGTCTTCGTCCT
CTACTCAGCCTCTCTCGTCTCTGTAGATAGTGTCAGTAGCAACAAAGCCA
AGCATCCTTCTTTTCTTCCCTGCCGTCCTTCCCTCCCTCCGGCCAACCCA
TACCTCGCTGTACCCAGCAGAGCACGAGGGCGTTCTAGAAAGAGCAGTCG
GAAAAGCAGCAGCAGCAGCGTCATGGTAGTACAAGCACCTATCTCCACGC
CTGGCGCTCATTCTCTCACACTTGTCAACTCCAAGACCGGAAACAAAGTT
GCAGGCATCCTTTCTGTCAAGGACCCTGCTTCCTCCTCCCTCTGTGTAAT
CTGCCATGGTCTCTGCAGCTCCAAGGAGACAGGCATCATCCGCACCCTAG
GCGAGGATTTAGACTTCAATACCCACCGATTTGATTTCGCCGGCAATGGA
GACAGCGAAGGTGACTTCCGCTACACGGGCTATGACCAAGAGGTGGAGGA
CCTGCGGGCTGTGGTGGAAGGCCTGCGCTCGCGAGGGTGGAACGTAGCTT
GTATCCTGGGCCACTCGAAGGGGGCGCATGCCGTCCTCCGTTACTCCAGC
ACCTACGGCGACGTTCCCAAGGTCTTCTCTCTGGCGGCGCGCTTCGACTT
TAGCCAACAGCCGGCCAGCCGTTTCACGCCCGAGCAGCTGCAGGCTATGG
AGAAGGACGGCTTCTTCCTGTGGAATGTCCGAGGGAGGGACTATAAAGTC
ACCAAAGAAGACTTCAAGGAGCGAGACAGCGTGAGTATTGGAGGGAGGGA
GGGAAGGCAGGGGGAGGGAGGGGAAGTCAGTGAAACGGAAGCGAGAAGTG
GGGGGGATGAAATTCAGGTCGAGGAGAATACCACAACGACTGTAACAAAT
TCACTCATCTTCCCCCTCCCTGCCTCTCTCCCTCCCTTCCTCCTTGGCGT
AGGTGGACATGGTTCCCCTCCTCGAGAGAGTGAAGACCACGCACCCGTCT
GTCCCTCCCTTCCTCCTCCTCGCCCACGGAGAAGCAGACGAGACAATCCC
TGTCAAGGACGTCGACTCCATCGCCGCAATCCTGGGTCCAAGGTGAGCCC
TCCCTCCCTGCCCCCCCTCTCATTCCCTCCCTCATCCTTCTCTGAATCAA
TCCTTTACTGCCTCACTCCCTCCCTCTCCCCCTCTCCCCCTCAGTTTCTG
CCGCGTGGTCCGTATCCCCGGGGCCGACCACTTTTACCGGCGGCCGGAAG
ACGCCCAGGCTGTCGTTCAAGCCGCCTCCCGCTTCTTGAAAGAGGGGTAG
AAGGAGGGGTGGAGACTCGTGTGGAGGAGATGTAA

Synonyms

Publications