NO25G00240.2, NO25G00240.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00240.2
Unique NameNO25G00240.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2505
Alignment locationchr25:63025..66509 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:63025..66509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00240.2 vs.
Match: CBJ26067.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 148.7 bits (374), Expect = 2.300e-32
Identity = 83/175 (47.43%), Postives = 107/175 (61.14%), Query Frame = 0 
Query:   65 SSRKSSSSSVMVV--QAPISTPGAHSLTLVNSKTGNKVAGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDLDFNTHRFDFAGNGDSEGDFRYTGYDQE---------GLRSRGWNVACILGHSKGAHAVLRYSSTYGDVPKVFSLAARFDFSQQPASRFTPEQLQAMEKDG 229
            SS  +SSS+V        ++ PG   L + N + G  + G+L+VK   S S+ V+CHGLCSS E  +   +  +L  NT+RFDFAG G S GD+RY GYD+E          LR  GWNV C+LGHSKGA AVLRY  T+ DVP V ++A RFD S+ P SRFT EQ   +E+ G
Sbjct:   40 SSTSTSSSAVQPAGEAGAVTVPGKSQLVVRNEEEGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSRELSENTYRFDFAGCGQSGGDWRYAGYDKELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWNQLEETG 214
The following BLAST results are available for this feature:
BLAST of NO25G00240.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26067.12.300e-3247.43conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00240NO25G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00240.2NO25G00240.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00240.2.cds1NO25G00240.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00240.2.cds2NO25G00240.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00240.2.cds3NO25G00240.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00240.2.cds4NO25G00240.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00240.2.cds5NO25G00240.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00240.2.cds6NO25G00240.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00240.2 ID=NO25G00240.2|Name=NO25G00240.2|organism=Nannochloropsis oceanica|type=mRNA|length=2505bp
TCCTCCTTCCCTTTCTCCCTGTCCCCCTCCTCCTCCTCCTCCTCCTCCCG
CTCGTCGTCGCCATCCCGCCCTTCCCCCTCTCCTGCGTCAGCTGTCGGTG
AAGACTTCCTCCTCCAGCGGCTACCATGACCCATTGCATCAGTAGGGGTT
GACGTGCAGAGATGAGGGTCCGACCCTCCCTCGCCCTCCTCCTTTCCCTC
CCTCCCCATCCAAGTCTCCAACAAAGCTGTAGATGACGGCAGGGGTCGCG
TCCGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTCCTC
CTCCTTCGGCTTCTGCTTCTGGTGCCATTACCATTGCCAGATAGTGATGT
TGGTGAGTTTGAGGGCAAGGGAGGCCTGGTGAGGGAGATAGAGAGGGGTT
GGGATGAAGAAGGGCTTAGCCCACCTCCTCCTTCTTCTCCTCCTCCTTCT
TCTCCTCTTCTTCTTCTTCCTTCCTCTTCTCCCCGTCCAGTACCTCCCCC
TCTTTCCCCTCCTCCTCCTCTTTCCCCATGCTTCAGGATCTGTCCTCCTT
CCTCCCGCCGCCTTGCTCTACCCCTCGTGTGGCTGCTGCCCTCCGCTCGG
GCAGCCTCAGCTTTGCTACCGCTACTTGCTGCTTTCATCGTCGTCGTCGC
GGTCGTCCGTGATACTGGTGGCGGCGCAGCGAGCTCATCCATCCTCCTGA
TCCTTGGATGCTTCTTCCTCGCTCGAGTTGTGGTGTCACTATTACAAGAG
GTTCCAGCAGCAGCAGCTGCGGCAGCAGGAGGAAGGGGGCAGGAGGCTAG
GTGAGCGCAGTACTACTTGGAAAAGAACAAAAAAAAAAGCCCCAGCGGCA
TGTACGAGAGCGCCGATCTCCGCTATGGGAGTGTCTACCTGTGATGCTGG
TGGGGTGATGGGCTTGATTCAGTAGGTAGCTGATCTCTCTCGCTAGGTGC
CAGCGGTGCGGGGCTGCCCCGTGACACAAACCTCGCCCCTTTATCTCCAA
CTTGAAATTCCACAGCGGATTCGTGCCTCCCCTCCCCTGATACGTGATAA
GCGAGAGCAGCCTGCTGCCGACTGGCATTCACAGTAAAACACTTTATACA
CAACACAGAAAAGACACGCGCAGCCACTGCTGCACACGGCACTCGGACAC
CAGCAGCTACACTTCGAGGCCCCAGACCAGCTGCCTTCCAGGCTGCTCTT
CTTGTCCTCGGTGATAGCCTCCTCGCTCCCGTACTTGACCCTTGTCAACT
CCTCCATGCTATCCATCCTGAATTGTATTTCCCTTCTCGCCCTTGTCTTC
GTCCTCTACTCAGCCTCTCTCGTCTCTGTAGATAGTGTCAGTAGCAACAA
AGCCAAGCATCCTTCTTTTCTTCCCTGCCGTCCTTCCCTCCCTCCGGCCA
ACCCATACCTCGCTGTACCCAGCAGAGCACGAGGGCGTTCTAGAAAGAGC
AGTCGGAAAAGCAGCAGCAGCAGCGTCATGGTAGTACAAGCACCTATCTC
CACGCCTGGCGCTCATTCTCTCACACTTGTCAACTCCAAGACCGGAAACA
AAGTTGCAGGCATCCTTTCTGTCAAGGACCCTGCTTCCTCCTCCCTCTGT
GTAATCTGCCATGGTCTCTGCAGCTCCAAGGAGACAGGCATCATCCGCAC
CCTAGGCGAGGATTTAGACTTCAATACCCACCGATTTGATTTCGCCGGCA
ATGGAGACAGCGAAGGTGACTTCCGCTACACGGGCTATGACCAAGAGGGC
CTGCGCTCGCGAGGGTGGAACGTAGCTTGTATCCTGGGCCACTCGAAGGG
GGCGCATGCCGTCCTCCGTTACTCCAGCACCTACGGCGACGTTCCCAAGG
TCTTCTCTCTGGCGGCGCGCTTCGACTTTAGCCAACAGCCGGCCAGCCGT
TTCACGCCCGAGCAGCTGCAGGCTATGGAGAAGGACGGGTGCGAAGGATG
ATGGGGGGGAAGGGAAGGAGGGAGGGAATGAAGTCTCCCCTGTTCGAGCC
AGTATTAAGTCTGCCCTTGTCACTCCTGCCATCTGCTTGTCTGTCGTTCT
ACACGGAGAGACAGACAAAAAGCGGTTTCCTCCCTGTGCCCGTCTCGTAT
TCACTCCCTCTCGCCCTCCCCTCCCTCCCTCCCTCCTTTCCTGCCTCCGT
AGCTTCTTCCTGTGGAATGTCCGAGGGAGGGACTATAAAGTCACCAAAGA
AGACTTCAAGGAGCGAGACAGCGTGGACATGGTTCCCCTCCTCGAGAGAG
TGAAGACCACGCACCCGTCTGTCCCTCCCTTCCTCCTCCTCGCCCACGGA
GAAGCAGACGAGACAATCCCTGTCAAGGACGTCGACTCCATCGCCGCAAT
CCTGGGTCCAAGTTTCTGCCGCGTGGTCCGTATCCCCGGGGCCGACCACT
TTTACCGGCGGCCGGAAGACGCCCAGGCTGTCGTTCAAGCCGCCTCCCGC
TTCTTGAAAGAGGGGTAGAAGGAGGGGTGGAGACTCGTGTGGAGGAGATG
TAAAA
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protein sequence of NO25G00240.2

>NO25G00240.2-protein ID=NO25G00240.2-protein|Name=NO25G00240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MLSILNCISLLALVFVLYSASLVSVDSVSSNKAKHPSFLPCRPSLPPANP
YLAVPSRARGRSRKSSRKSSSSSVMVVQAPISTPGAHSLTLVNSKTGNKV
AGILSVKDPASSSLCVICHGLCSSKETGIIRTLGEDLDFNTHRFDFAGNG
DSEGDFRYTGYDQEGLRSRGWNVACILGHSKGAHAVLRYSSTYGDVPKVF
SLAARFDFSQQPASRFTPEQLQAMEKDGCEG*
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mRNA from alignment at chr25:63025..66509+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00240.2 ID=NO25G00240.2|Name=NO25G00240.2|organism=Nannochloropsis oceanica|type=mRNA|length=3485bp|location=Sequence derived from alignment at chr25:63025..66509+ (Nannochloropsis oceanica)
TCCTCCTTCCCTTTCTCCCTGTCCCCCTCCTCCTCCTCCTCCTCCTCCCG
CTCGTCGTCGCCATCCCGCCCTTCCCCCTCTCCTGCGTCAGCTGTCGGTG
AAGACTTCCTCCTCCAGCGGCTACCATGACCCATTGCATCAGTAGGGGTT
GACGTGCAGAGATGAGGGTCCGACCCTCCCTCGCCCTCCTCCTTTCCCTC
CCTCCCCATCCAAGTCTCCAACAAAGCTGTAGATGACGGCAGGGGTCGCG
TCCGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTCCTC
CTCCTTCGGCTTCTGCTTCTGGTGCCATTACCATTGCCAGATAGTGATGT
TGGTGAGTTTGAGGGCAAGGGAGGCCTGGTGAGGGAGATAGAGAGGGGTT
GGGATGAAGAAGGGCTTAGCCCACCTCCTCCTTCTTCTCCTCCTCCTTCT
TCTCCTCTTCTTCTTCTTCCTTCCTCTTCTCCCCGTCCAGTACCTCCCCC
TCTTTCCCCTCCTCCTCCTCTTTCCCCATGCTTCAGGATCTGTCCTCCTT
CCTCCCGCCGCCTTGCTCTACCCCTCGTGTGGCTGCTGCCCTCCGCTCGG
GCAGCCTCAGCTTTGCTACCGCTACTTGCTGCTTTCATCGTCGTCGTCGC
GGTCGTCCGTGATACTGGTGGCGGCGCAGCGAGCTCATCCATCCTCCTGA
TCCTTGGATGCTTCTTCCTCGCTCGAGTTGTGGTGTCACTATTACAAGAG
GTTCCAGCAGCAGCAGCTGCGGCAGCAGGAGGAAGGGGGCAGGAGGCTAG
GTGAGCGCAGTACTACTTGGAAAAGAACAAAAAAAAAAGCCCCAGCGGCA
TGTACGAGAGCGCCGATCTCCGCTATGGGAGTGTCTACCTGTGATGCTGG
TGGGGTGATGGGCTTGATTCAGTAGGTAGCTGATCTCTCTCGCTAGGTGC
CAGCGGTGCGGGGCTGCCCCGTGACACAAACCTCGCCCCTTTATCTCCAA
CTTGAAATTCCACAGCGGATTCGTGCCTCCCCTCCCCTGATACGTGATAA
GCGAGAGCAGCCTGCTGCCGACTGGCATTCACAGTAAAACACTTTATACA
CAACACAGAAAAGACACGCGCAGCCACTGCTGCACACGGCACTCGGACAC
CAGCAGCTACACTTCGAGGCCCCAGACCAGCTGCCTTCCAGGCTGCTCTT
CTTGTCCTCGGTGATAGCCTCCTCGCTCCCGTACTTGACCCTTGTCAACT
CCTCCATGCTATCCATCCTGAATTGTATTTCCCTTCTCGCCCTTGTCTTC
GTCCTCTACTCAGCCTCTCTCGTCTCTGTAGATAGTGTCAGTAGCAACAA
AGCCAAGCATCCTTCTTTTCTTCCCTGCCGTCCTTCCCTCCCTCCGGCCA
ACCCATACCTCGCTGTACCCAGCAGAGCACGAGGGCGTTCTAGAAAGAGC
AGTCGGAAAAGCAGCAGCAGCAGCGTCATGGTAGTACAAGCACCTATCTC
CACGCCTGGGTAGGCACTTTCACTCGAGAGACCTGCAGCCATCCATTGCC
CCGCCCTCCGTCCCTCCCTCTTCCTCAAAATACCCCCCAACCATCTCCTC
ACCTTTCCGCCCTTCCTCTATCCCTCCCTCCATCCCTACTCTAGCGCTCA
TTCTCTCACACTTGTCAACTCCAAGACCGGAAACAAAGTTGCAGGCATCC
TTTCTGTCAAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGGGATGAGGGGGAGAAATGAAAGCTATGGAGAGGTGAACGCGAGGAA
AAGAAAAGTCAGATTACAATGAAGAGAAACTCAGGCGTGCCGTGCTTTCT
TGTTATTTCCCCATCCATCACACTACACTCTCCGTCTTCCTTCCCTCTCT
CCCTCCCTCCCTCCCTCCCTCACCCAGGACCCTGCTTCCTCCTCCCTCTG
TGTAATCTGCCATGGTCTCTGCAGCTCCAAGGAGACAGGCATCATCCGCA
CCCTAGGCGAGGATTTAGACTTCAATACCCACCGGTACGCCAGTCCAGTC
CCTCCTATTTCCCTCCTTCGTCCTCGTTCGCCTTCTGGTGCTTCCCTTTC
ACGTCCTCTCCTTCCTTCCCCCTATCCCTCCCTCCCTCCTCACCCTCCCT
CCCTTCCTCTCAGATTTGATTTCGCCGGCAATGGAGACAGCGAAGGTGAC
TTCCGCTACACGGGCTATGACCAAGAGGTGGAGGACCTGCGGGCTGTGGT
GGAAGTGAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCTCCCCTCCC
TCCCTCTCCTGACCACTCTGAAGGACTCAAACATGCGCCATTCCCTCTTT
TCCTCCCTCCCTTCCTTCCCCAGGGCCTGCGCTCGCGAGGGTGGAACGTA
GCTTGTATCCTGGGCCACTCGAAGGGGGCGCATGCCGTCCTCCGTTACTC
CAGCACCTACGGCGACGTTCCCAAGGTAGGACGAAACTACCCTCCCTCCC
TCCATCCCTCCTTCCCCTTCCTCCCTCCCACTCATCCCCCCCCTCCTCCC
CCCAGGTCTTCTCTCTGGCGGCGCGCTTCGACTTTAGCCAACAGCCGGCC
AGCCGTTTCACGCCCGAGCAGCTGCAGGCTATGGAGAAGGACGGGTGCGA
AGGATGATGGGGGGGAAGGGAAGGAGGGAGGGAATGAAGTCTCCCCTGTT
CGAGCCAGTATTAAGTCTGCCCTTGTCACTCCTGCCATCTGCTTGTCTGT
CGTTCTACACGGAGAGACAGACAAAAAGCGGTTTCCTCCCTGTGCCCGTC
TCGTATTCACTCCCTCTCGCCCTCCCCTCCCTCCCTCCCTCCTTTCCTGC
CTCCGTAGCTTCTTCCTGTGGAATGTCCGAGGGAGGGACTATAAAGTCAC
CAAAGAAGACTTCAAGGAGCGAGACAGCGTGAGTATTGGAGGGAGGGAGG
GAAGGCAGGGGGAGGGAGGGGAAGTCAGTGAAACGGAAGCGAGAAGTGGG
GGGGATGAAATTCAGGTCGAGGAGAATACCACAACGACTGTAACAAATTC
ACTCATCTTCCCCCTCCCTGCCTCTCTCCCTCCCTTCCTCCTTGGCGTAG
GTGGACATGGTTCCCCTCCTCGAGAGAGTGAAGACCACGCACCCGTCTGT
CCCTCCCTTCCTCCTCCTCGCCCACGGAGAAGCAGACGAGACAATCCCTG
TCAAGGACGTCGACTCCATCGCCGCAATCCTGGGTCCAAGGTGAGCCCTC
CCTCCCTGCCCCCCCTCTCATTCCCTCCCTCATCCTTCTCTGAATCAATC
CTTTACTGCCTCACTCCCTCCCTCTCCCCCTCTCCCCCTCAGTTTCTGCC
GCGTGGTCCGTATCCCCGGGGCCGACCACTTTTACCGGCGGCCGGAAGAC
GCCCAGGCTGTCGTTCAAGCCGCCTCCCGCTTCTTGAAAGAGGGGTAGAA
GGAGGGGTGGAGACTCGTGTGGAGGAGATGTAAAA
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Coding sequence (CDS) from alignment at chr25:63025..66509+

>NO25G00240.2 ID=NO25G00240.2|Name=NO25G00240.2|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr25:63025..66509+ (Nannochloropsis oceanica)
ATGCTATCCATCCTGAATTGTATTTCCCTTCTCGCCCTTGTCTTCGTCCT
CTACTCAGCCTCTCTCGTCTCTGTAGATAGTGTCAGTAGCAACAAAGCCA
AGCATCCTTCTTTTCTTCCCTGCCGTCCTTCCCTCCCTCCGGCCAACCCA
TACCTCGCTGTACCCAGCAGAGCACGAGGGCGTTCTAGAAAGAGCAGTCG
GAAAAGCAGCAGCAGCAGCGTCATGGTAGTACAAGCACCTATCTCCACGC
CTGGCGCTCATTCTCTCACACTTGTCAACTCCAAGACCGGAAACAAAGTT
GCAGGCATCCTTTCTGTCAAGGACCCTGCTTCCTCCTCCCTCTGTGTAAT
CTGCCATGGTCTCTGCAGCTCCAAGGAGACAGGCATCATCCGCACCCTAG
GCGAGGATTTAGACTTCAATACCCACCGATTTGATTTCGCCGGCAATGGA
GACAGCGAAGGTGACTTCCGCTACACGGGCTATGACCAAGAGGGCCTGCG
CTCGCGAGGGTGGAACGTAGCTTGTATCCTGGGCCACTCGAAGGGGGCGC
ATGCCGTCCTCCGTTACTCCAGCACCTACGGCGACGTTCCCAAGGTCTTC
TCTCTGGCGGCGCGCTTCGACTTTAGCCAACAGCCGGCCAGCCGTTTCAC
GCCCGAGCAGCTGCAGGCTATGGAGAAGGACGGGTGCGAAGGATGA
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Synonyms
Publications