NO24G02030, NO24G02030 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_016142041.1 (PREDICTED: DNA polymerase iota [Sinocyclocheilus grahami]) HSP 1 Score: 185.3 bits (469), Expect = 3.400e-43 Identity = 105/251 (41.83%), Postives = 150/251 (59.76%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK--------EGEGGGEEXXXXXXEEATEA--------MRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPR-RLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVP 235 M NP+LR++P+ IQQKYL+VT N VAR GV+K+ S+ +A +CP+LV+V GEDLT YRE S + ++L ++ P +ERLG DE ++D+T +++ L + G E E A A MRQ +F LG T CAGI+NNK+LAK+ KPN QTTLLP +S L ++PG G+ T L+ LG+ +V L+ SL+ L GE+ AKR+ +L+ G+D SP+ P+ P Sbjct: 52 MIRNPALRNKPLGIQQKYLIVTCNYVAREHGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLKETCISDLSFNGHVYKHESMAVDEENARLAVGSVIAAEMRQAIFSTLGLTGCAGIANNKLLAKLVAGTFKPNQQTTLLPYSTAELMSSLTGLIKVPGIGYKTREKLKALGLVSVRDLQLYSLADLVREFGEVTAKRIQNLACGIDDSPVTPAGP 302
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_007902224.1 (PREDICTED: DNA polymerase iota isoform X2 [Callorhinchus milii]) HSP 1 Score: 184.5 bits (467), Expect = 5.800e-43 Identity = 103/256 (40.23%), Postives = 145/256 (56.64%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGKEGEG---------------------GGEEXXXXXXEEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPL-PPRRLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVP 235 M NP LR++P+ + QKYL+VT N AR +GV K+ EA+ +CPELV+VNGEDLT YRE S + ++L+ F+P +ERLG DE ++D T +++ LG+ G G G++ + MR L LG T CAGI+ NK+LAKM KPN QTTLLP + + L P++L G G+ TA+ L+ LG+ T++ L+ I L L +G A+R+ LS G D SP+ P P Sbjct: 72 MIRNPKLRNKPIGVHQKYLMVTCNYEARKRGVSKLMLFNEAKEKCPELVMVNGEDLTPYREISYKVTELLEEFSPLVERLGFDENFIDATKLVEKRLGQIGGGRDPTEIYVSGHIYNNQALDTSDGKQVRLALGSQVAAEMRAALHNRLGLTGCAGIACNKLLAKMVSGTFKPNQQTTLLPDSTLQLMRSLTQPQQLIGIGYKTAKRLEALGVRTLSSLQTIPLHVLEKELGSSGAQRIQRLSLGEDKSPVTPKGP 327
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_007902226.1 (PREDICTED: DNA polymerase iota isoform X4 [Callorhinchus milii] >XP_007902228.1 PREDICTED: DNA polymerase iota isoform X4 [Callorhinchus milii]) HSP 1 Score: 184.5 bits (467), Expect = 5.800e-43 Identity = 103/256 (40.23%), Postives = 145/256 (56.64%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGKEGEG---------------------GGEEXXXXXXEEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPL-PPRRLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVP 235 M NP LR++P+ + QKYL+VT N AR +GV K+ EA+ +CPELV+VNGEDLT YRE S + ++L+ F+P +ERLG DE ++D T +++ LG+ G G G++ + MR L LG T CAGI+ NK+LAKM KPN QTTLLP + + L P++L G G+ TA+ L+ LG+ T++ L+ I L L +G A+R+ LS G D SP+ P P Sbjct: 1 MIRNPKLRNKPIGVHQKYLMVTCNYEARKRGVSKLMLFNEAKEKCPELVMVNGEDLTPYREISYKVTELLEEFSPLVERLGFDENFIDATKLVEKRLGQIGGGRDPTEIYVSGHIYNNQALDTSDGKQVRLALGSQVAAEMRAALHNRLGLTGCAGIACNKLLAKMVSGTFKPNQQTTLLPDSTLQLMRSLTQPQQLIGIGYKTAKRLEALGVRTLSSLQTIPLHVLEKELGSSGAQRIQRLSLGEDKSPVTPKGP 256
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_016321395.1 (PREDICTED: DNA polymerase iota isoform X1 [Sinocyclocheilus anshuiensis]) HSP 1 Score: 184.5 bits (467), Expect = 5.800e-43 Identity = 105/251 (41.83%), Postives = 149/251 (59.36%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK--------EGEGGGEEXXXXXXEEATEA--------MRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPR-RLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVP 235 M NP+LR++P+ IQQKYL+VT N VAR GV+K+ S+ +A +CP+LV+V GEDLT YRE S + ++L ++ P +ERLG DE ++D+T +++ L + G E E A A MRQ +F LG T CAGI+NNK+LAK+ KPN QTTLLP +S L ++PG G+ T L+ LG+ +V L+ SL L GE+ AKR+ +L+ G+D SP+ P+ P Sbjct: 77 MIRNPALRNKPLGIQQKYLIVTCNYVAREHGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLKETCSSDLSFNGHVYKHERMAVDEENARLAVGSVIAAEMRQAIFSTLGLTGCAGIANNKLLAKLVSGTFKPNQQTTLLPYSTAELMSSLTGLIKVPGIGYKTREKLKALGLVSVRDLQLYSLPDLVREFGEVTAKRIQNLACGIDDSPVTPAGP 327
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_016321396.1 (PREDICTED: DNA polymerase iota isoform X2 [Sinocyclocheilus anshuiensis]) HSP 1 Score: 184.5 bits (467), Expect = 5.800e-43 Identity = 105/251 (41.83%), Postives = 149/251 (59.36%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK--------EGEGGGEEXXXXXXEEATEA--------MRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPR-RLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVP 235 M NP+LR++P+ IQQKYL+VT N VAR GV+K+ S+ +A +CP+LV+V GEDLT YRE S + ++L ++ P +ERLG DE ++D+T +++ L + G E E A A MRQ +F LG T CAGI+NNK+LAK+ KPN QTTLLP +S L ++PG G+ T L+ LG+ +V L+ SL L GE+ AKR+ +L+ G+D SP+ P+ P Sbjct: 52 MIRNPALRNKPLGIQQKYLIVTCNYVAREHGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLKETCSSDLSFNGHVYKHERMAVDEENARLAVGSVIAAEMRQAIFSTLGLTGCAGIANNKLLAKLVSGTFKPNQQTTLLPYSTAELMSSLTGLIKVPGIGYKTREKLKALGLVSVRDLQLYSLPDLVREFGEVTAKRIQNLACGIDDSPVTPAGP 302
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_002601223.1 (hypothetical protein BRAFLDRAFT_225416 [Branchiostoma floridae] >EEN57235.1 hypothetical protein BRAFLDRAFT_225416, partial [Branchiostoma floridae]) HSP 1 Score: 183.7 bits (465), Expect = 1.000e-42 Identity = 108/250 (43.20%), Postives = 141/250 (56.40%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK--------------EGEGGGE-EXXXXXXEEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPL-PPRRLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVP 235 M +PSLRD+P+ IQQKY++VT N VAR GV K+ + +A+ CPELV+V GEDLT YRE S I L+ F+P +ERLG DE ++D+T +DA L E EG E + MRQ L +LG T CAGI++NK+LAK+ HKPN QT+LLPG + L R +PG G T + LQ LGI TV L++ L G A+ + L GVDPSP+ P+ P Sbjct: 31 MIRDPSLRDKPLGIQQKYIVVTCNYVARKHGVTKLMGIKQAKELCPELVLVKGEDLTHYREMSYRITVTLQKFSPLVERLGFDENFVDVTETVDARLKSTFSPQLNGHIFPEMEIEGTYERHKRLACGSQIAAEMRQALHSDLGITCCAGIAHNKLLAKLVAGQHKPNQQTSLLPGGVGKLMGTLKTARNIPGIGSRTFKRLQTLGISTVQDLQDAPADVLQAEFGSQTAQVMQQLCRGVDPSPVTPTGP 280
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_022329291.1 (DNA polymerase iota-like isoform X1 [Crassostrea virginica]) HSP 1 Score: 183.7 bits (465), Expect = 1.000e-42 Identity = 108/251 (43.03%), Postives = 146/251 (58.17%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAII-----------------DAALGKEG--EGGGEEXXXXXXEEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLP-PRRLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRP 232 M NP LRD+P+ IQQK ++VT N VAR GV K+ + +A+ +CP+LV+V+GEDLT YR S I + LK +TP +ERLG+DE YLD+T ++ D+ K G G E A E +R L +E+G T CAGIS NK+LAK+ GE HKPN QTTL P F++ LP R +PG G ATAR L G+ T+ L++ SL L +G+ A + LS G+D +P+ P Sbjct: 57 MIRNPVLRDKPLGIQQKNIVVTCNYVAREFGVTKLMYIKDAKEKCPQLVLVSGEDLTNYRNVSNRISEFLKKYTPYVERLGMDENYLDVTDLVKLKKDNLPSTVAGHVFGDSTQHKSGMCTCGCYERILLGSHLAAE-IRAALHKEIGITCCAGISYNKLLAKLVGEQHKPNQQTTLFPSSVPAFMAKLPKARNIPGVGHATARKLADFGVVTMVDLQQCSLEDLKREIGDSLAVTIKELSEGIDENPVIP 306
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_016409437.1 (PREDICTED: DNA polymerase iota isoform X1 [Sinocyclocheilus rhinocerous]) HSP 1 Score: 183.3 bits (464), Expect = 1.300e-42 Identity = 104/251 (41.43%), Postives = 149/251 (59.36%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK--------EGEGGGEEXXXXXXEEATEA--------MRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPR-RLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVP 235 M NP+LR++P+ IQQKYL+VT N VAR G++K+ S+ +A +CP+LV+V GEDLT YRE S + ++L ++ P +ERLG DE ++D+T +++ L + G E E A A MRQ +F LG T CAGI+NNK+LAK+ KPN QTTLLP +S L ++PG G+ T L+ LG+ +V L+ SL L GE+ AKR+ +L+ G+D SP+ P+ P Sbjct: 76 MIRNPALRNKPLGIQQKYLIVTCNYVAREHGLNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLKETCISDLSFNGHVYKHESMVVDEENARLAVGSVIAAEMRQAIFSTLGLTGCAGIANNKLLAKLVSGTFKPNQQTTLLPYSTAELMSSLTGLIKVPGIGYKTREKLKALGLVSVRDLQLYSLPDLVREFGEVTAKRIQNLACGIDDSPVTPAGP 326
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_016409438.1 (PREDICTED: DNA polymerase iota isoform X2 [Sinocyclocheilus rhinocerous]) HSP 1 Score: 183.3 bits (464), Expect = 1.300e-42 Identity = 104/251 (41.43%), Postives = 149/251 (59.36%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK--------EGEGGGEEXXXXXXEEATEA--------MRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPR-RLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVP 235 M NP+LR++P+ IQQKYL+VT N VAR G++K+ S+ +A +CP+LV+V GEDLT YRE S + ++L ++ P +ERLG DE ++D+T +++ L + G E E A A MRQ +F LG T CAGI+NNK+LAK+ KPN QTTLLP +S L ++PG G+ T L+ LG+ +V L+ SL L GE+ AKR+ +L+ G+D SP+ P+ P Sbjct: 52 MIRNPALRNKPLGIQQKYLIVTCNYVAREHGLNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLKETCISDLSFNGHVYKHESMVVDEENARLAVGSVIAAEMRQAIFSTLGLTGCAGIANNKLLAKLVSGTFKPNQQTTLLPYSTAELMSSLTGLIKVPGIGYKTREKLKALGLVSVRDLQLYSLPDLVREFGEVTAKRIQNLACGIDDSPVTPAGP 302
BLAST of NO24G02030 vs. NCBI_GenBank
Match: XP_022331447.1 (DNA polymerase iota-like [Crassostrea virginica]) HSP 1 Score: 183.0 bits (463), Expect = 1.700e-42 Identity = 107/251 (42.63%), Postives = 146/251 (58.17%), Query Frame = 0 Query: 1 MRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAII-----------------DAALGKEG--EGGGEEXXXXXXEEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLP-PRRLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRP 232 M NP+LRD+P+ IQQK ++VT N VAR GV K+ + +A+ +CP+LV+V+GEDLT YR S I + LK +TP +ERLG+DE YLD+T ++ D+ K G G E A E +R L +E+G T CAGIS NK+LAK+ GE HKPN QTTL P F++ LP R +PG G ATAR L G+ T+ L++ L L +G+ A + LS G+D +P+ P Sbjct: 57 MIRNPALRDKPLGIQQKNIVVTCNYVAREFGVTKLMYIKDAKEKCPQLVLVSGEDLTNYRNVSNRISEFLKKYTPYVERLGMDENYLDVTDLVKLKKDNIPSTVAGHVFGDSTQHKSGMCTCGCYERILLGSHLAAE-IRAALHKEIGITCCAGISYNKLLAKLVGEQHKPNQQTTLFPSSVPAFMAKLPKARNIPGVGHATARKLADFGVVTMVDLQQCPLEDLKREIGDSLAVTIKELSEGIDENPVIP 306 The following BLAST results are available for this feature:
BLAST of NO24G02030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
The following polypeptide feature(s) derives from this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G02030 ID=NO24G02030|Name=NO24G02030|organism=Nannochloropsis oceanica|type=gene|length=4160bpback to top protein sequence of NO24G02030.1 >NO24G02030.1-protein ID=NO24G02030.1-protein|Name=NO24G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bpback to top protein sequence of NO24G02030.2 >NO24G02030.2-protein ID=NO24G02030.2-protein|Name=NO24G02030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=423bpback to top protein sequence of NO24G02030.3 >NO24G02030.3-protein ID=NO24G02030.3-protein|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=polypeptide|length=449bpback to top protein sequence of NO24G02030.4 >NO24G02030.4-protein ID=NO24G02030.4-protein|Name=NO24G02030.4|organism=Nannochloropsis oceanica|type=polypeptide|length=415bpback to top protein sequence of NO24G02030.5 >NO24G02030.5-protein ID=NO24G02030.5-protein|Name=NO24G02030.5|organism=Nannochloropsis oceanica|type=polypeptide|length=362bpback to top Synonyms
Publications
|