NO24G02030.3, NO24G02030.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G02030.3
Unique Name	NO24G02030.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1898
Alignment location	chr24:536966..541125 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:536966..541125 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G02030.3 vs.
Match: XP_016142041.1 (PREDICTED: DNA polymerase iota [Sinocyclocheilus grahami])

HSP 1 Score: 230.7 bits (587), Expect = 8.800e-57
Identity = 147/376 (39.10%), Postives = 211/376 (56.12%), Query Frame = 0

Query:   35 EEDEIEEIDDEESSSCFLTEARDAAIGRSSNATKHDRRVIVHIDLDCFYAQCEMRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK---------------EGEGGGEEGGK-GEGEEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPR-RLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVPPSLPKSMSEEDSFHSSTVTAAAAATAAGTSFTVTTREEAARQLRRLVTHLVKRIEDRRVAYGELPHTLRLTI 394
            + DE  + D + S    + E   ++  R    T   +RVI+HIDLDCFYAQ EM  NP+LR++P+ IQQKYL+VT N VAR  GV+K+ S+ +A  +CP+LV+V GEDLT YRE S  + ++L ++ P +ERLG DE ++D+T +++  L +               E     EE  +   G      MRQ +F  LG T CAGI+NNK+LAK+     KPN QTTLLP      +S L    ++PG G+ T   L+ LG+ +V  L+  SL+ L    GE+ AKR+ +L+ G+D SP+ P+ P   P+S+S+EDSF                   ++T EE  ++   L+T L +R+       G  PHT RLTI
Sbjct:    2 DTDEEGDNDWDRSLESDMLETEGSSTDR---VTSISQRVILHIDLDCFYAQVEMIRNPALRNKPLGIQQKYLIVTCNYVAREHGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLKETCISDLSFNGHVYKHESMAVDEENARLAVGSVIAAEMRQAIFSTLGLTGCAGIANNKLLAKLVAGTFKPNQQTTLLPYSTAELMSSLTGLIKVPGIGYKTREKLKALGLVSVRDLQLYSLADLVREFGEVTAKRIQNLACGIDDSPVTPAGP---PQSLSDEDSFKK-----------------ISTLEEVQKKTEELLTSLTERMHKD----GRRPHTFRLTI 350

The following BLAST results are available for this feature:

BLAST of NO24G02030.3 vs.

BLAST of NO24G02030.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_016142041.1	8.800e-57	39.10	PREDICTED: DNA polymerase iota [Sinocyclocheilus g...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G02030	NO24G02030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02030.3	NO24G02030.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02030.3.cds1	NO24G02030.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds2	NO24G02030.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds3	NO24G02030.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds4	NO24G02030.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds5	NO24G02030.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds6	NO24G02030.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds7	NO24G02030.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds8	NO24G02030.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds9	NO24G02030.3.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02030.3.cds10	NO24G02030.3.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:536966..541125+
coding sequence from alignment at chr24:536966..541125+

mRNA sequence

>NO24G02030.3 ID=NO24G02030.3|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=mRNA|length=1898bp
AAGCACCCGGCGTCGCATACCACCCAGACGCCCCTCTCAGCGGCGTCTGC
CCCCTCATTTTTTTTAACTTTCGCACGTGGCAACCAATCGGCATATTATG
CAGCGAGCTACCTTATGCGACCCATTTGGTCACAATGGCGAGCCCGGTCA
AGGCTCATTGTCCGCCAGATGTTTGGCGCGTCTTGACAGGCAACTCACAG
AGAAGAGGGCAATCCAGCTCGACATGCACCACGTCCCGCACTCTCAACGA
AGCTTCTCCTACCACGGTACCGTCTCTGCCTCCACTTTCCTCTCGTCGCC
ACCCTCCTCCTCCTCCTCGTCCTTCACCTTCTCCCCCCCAAACCTCCTCC
CCTTCCCCCTCCCCCTCCAACCTCCTCTCCCCACCTATGATGGAGATGTC
TAGTTGTTAGCGACAAAGGTGATCATAAAATGTCCGTCTGCGCTTCGCAA
ACGGCTGTGTGATACAGGCAAATTGGTGGGTAAAGCATGGTCCCTTCATG
AGATAAAAGTATGTATGCACGAGAAGCAAGCCCGATTTCCTTGCCTCGCT
GATGAAACCACGTTTTCATGCACATGTACATCGCAGGATCGTAGTTAAGT
GTGCATATCATAGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAA
GAGGAGGAGGACGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTG
CTTCTTGACGGAGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAA
CAAAGCATGACCGTCGTGTCATTGTTCATATCGACCTGGATTGTTTCTAC
GCCCAATGTGAGATGAGGCACAACCCATCCCTTCGCGACCGACCCATGGC
CATCCAGCAGAAGTACCTCCTCGTCACCTCCAATCAAGTTGCGCGAAACC
AGGGAGTCCACAAAATGCAGTCCCTCGCTGAGGCCCGCCGGCGATGTCCA
GAGCTGGTGGTGGTCAATGGGGAGGACTTGACTCGGTATAGGGAATGCTC
GGAGCTGATATATGATGTCTTGAAGACCTTCACTCCCAAGCTGGAGAGGC
TGGGCTTGGACGAGACCTACCTCGACATCACTGCCATCATCGACGCCGCT
CTTGGGAAGGAAGGGGAGGGAGGGGGAGAGGAAGGGGGGAAGGGGGAGGG
GGAGGAGGCTACGGAGGCCATGCGGCAGAGACTCTTTGAGGAGCTGGGCT
TCACGTCCTGTGCGGGCATTAGCAACAACAAAATGCTTGCCAAGATGGCT
GGAGAGCTTCACAAGCCCAATGCTCAGACCACGCTCTTGCCGGGAGATGC
CATCCCTTTCCTCTCCCCCCTTCCTCCTCGTCGCTTGCCAGGGTGTGGGT
GGGCGACGGCTCGCTCGCTCCAAAGGCTGGGCATAGATACTGTGGCTTGC
CTGCGAGAAATATCACTCTCGACTCTAGCACCCGCGGTGGGGGAGATGCA
GGCCAAGCGCCTCCTATCCCTCTCCTGGGGTGTCGATCCGTCACCCCTTC
GTCCCTCCGTCCCTCCCTCCCTCCCCAAATCTATGTCAGAAGAAGACTCG
TTCCATTCGTCCACTGTCACTGCTGCTGCTGCTGCAACTGCAGCCGGTAC
TTCTTTTACGGTGACGACGAGAGAAGAAGCAGCACGTCAGCTGAGGCGTT
TGGTGACTCATTTGGTGAAGAGAATTGAAGACAGGAGGGTTGCGTATGGA
GAGCTCCCCCATACCCTCCGCCTCACCATCATCCGTCGGAATCCTCCTCC
TGCCTCCTCCTCCTCCTCCACCCCGTCCTCCTCGACCCATAGCAGGAAAG
AATCCCGCCAAGCCACTCTCAAAAATCCGCTCTCGATTTTCTTACGTGCA
GCGGCCACAGGAGGAGGAGGGGGAGGAGGAGGAAGAAAAGAAAAATAG

protein sequence of NO24G02030.3

>NO24G02030.3-protein ID=NO24G02030.3-protein|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MKPRFHAHVHRRIVVKCAYHSLCRESMLDEEEEEEEDEIEEIDDEESSSC
FLTEARDAAIGRSSNATKHDRRVIVHIDLDCFYAQCEMRHNPSLRDRPMA
IQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECS
ELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGKEGEGGGEEGGKGEG
EEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDA
IPFLSPLPPRRLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQ
AKRLLSLSWGVDPSPLRPSVPPSLPKSMSEEDSFHSSTVTAAAAATAAGT
SFTVTTREEAARQLRRLVTHLVKRIEDRRVAYGELPHTLRLTIIRRNPPP
ASSSSSTPSSSTHSRKESRQATLKNPLSIFLRAAATGGGGGGGGRKEK*

mRNA from alignment at chr24:536966..541125+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G02030.3 ID=NO24G02030.3|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=mRNA|length=4160bp|location=Sequence derived from alignment at chr24:536966..541125+ (Nannochloropsis oceanica)
AAGCACCCGGCGTCGCATACCACCCAGACGCCCCTCTCAGCGGCGTCTGC
CCCCTCATTTTTTTTAACTTTCGCACGTGGCAACCAATCGGCATATTATG
CAGCGAGCTACCTTATGCGACCCATTTGGTCACAATGGCGAGCCCGGTCA
AGGCTCATTGTCCGCCAGATGTTTGGCGCGTCTTGACAGGCAACTCACAG
AGAAGAGGGCAATCCAGCTCGACATGCACCACGTCCCGCACTCTCAACGA
AGCTTCTCCTACCACGGTACCGTCTCTGCCTCCACTTTCCTCTCGTCGCC
ACCCTCCTCCTCCTCCTCGTCCTTCACCTTCTCCCCCCCAAACCTCCTCC
CCTTCCCCCTCCCCCTCCAACCTCCTCTCCCCACCTATGATGGAGATGTC
TAGTTGTTAGCGACAAAGGTGATCATAAAATGTCCGTCTGCGCTTCGCAA
ACGGCTGTGTGATACAGGCAAATTGGTGGGTAAAGCATGGTCCCTTCATG
AGATAAAAGTATGTATGCACGAGAAGCAAGCCCGATTTCCTTGCCTCGCT
GATGAAACCACGTTTTCATGCACATGTACATCGCAGGATCGTAGTTAAGT
GTGCATATCATAGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAA
GAGGAGGAGGACGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTG
CTTCTTGACGGAGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAA
CAAAGCATGACCGTCGTGTCATTGTTCATATCGGTAAGCGAGGGCAGGGG
TGAGAAGATAGGAAAAACGAAAGGGAAGGGAGTACGGAAGGCAATCGCAG
GTGAGTGAATGGAAGGGATGTGAGGAGGGAATGGAACTAAATACGGTCGA
TGCAAGGACTTTACACGTCCTACACGCATATTTGTAAATCCTCAATCCTC
ATTATCCCTATCCCTCCTTCCCCTGTTCATTCTCGTCCCAACTCTCTCTT
CTCCTAGACCAACTAATCCACCCACCCTCCCTCCCTCCCTTCCTTCCTTC
CTCCCTCCTCCCCACAGACCTGGATTGTTTCTACGCCCAATGTGAGATGA
GGCACAACCCATCCCTTCGCGACCGACCCATGGCCATCCAGCAGAAGTAC
CTCCTCGTCACCTCCAATCAAGTTGCGCGAAACCAGGGAGTCCACAAAAT
GCAGGTTTGGCCCCCTCCCCCACTCCCTCCCTCCTTTTTTCACCCTCCTT
TTTTTCCATCCTTCTCATCCCCGTCTATTTCCTGTGTGCTTTTGACACCC
TCATGGATCAATTGAGGCTTCCTTTGGGGGAAATTTATTTGTAATATTTA
TTTGTATATTTTTGTAATTGAATTTATTTATACATATATGTGTGTTTATA
ATGTGTATTCATACACTACGCAGTACTTTAAGGAGCCACATTAAAAGGAT
GGTAGAAAATCCAACCTCGCCCTCCCTCCCTCCCGCCCTCCCTCCTCCCT
CCCTCTTCCCCTTCCTCACTCCCTCAGTCCCTCGCTGAGGCCCGCCGGCG
ATGTCCAGAGCTGGTGGTGGTCAATGGGGAGGACTTGACTCGGTATAGGG
AATGCTCGGAGCTGATATATGATGTCTTGAAGACCTTCACTCCCAAGCTG
GAGAGGCTGGTGGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAAGGGAAGGCAAGGCTAGCAAAATGCACTGAGATTGATTGATTGATTGA
TTGATTGATGGATTGATTGAGAGTTTGCATGGACCTTCTATTCATTCCTC
CCAGGGCTTGGACGATTGATTGATTGATTGATTGATTTGTGGATTCGCAG
CTATTGGCCTTGGTTGAGCCTCCTAAATCATCGAAATGTTTAATCAGTAA
GTCACGATACACGCACAATTCCCTCTCAGGGCTTGGACGAGACCTACCTC
GACATCACTGCCATCATCGACGCCGCTCTTGGGAAGGAAGGGGAGGGAGG
GGGAGAGGAAGGGGGGAAGGGGGAGGGGGAGGAGGCTACGGAGGTGCGAG
AGAAGACAATGGCAGCCTCCCCCCTCCCTCGTCCTCCCCTCGTCCTATAC
CTTTCCCCCTCCCTCGTCCTTGTCCTCCTTAGTCGGGAACCTGTACACCC
CGGGAGGGGGGGGAGGAGGGAGGGAAAAAGGGCGGGAACGGGAGCGGCAG
GAGCGTCAGCCCGCGTGTTGTACCTGCGGGTGTGTCGAGCGGTTGAAGGC
CGGTTCACACGTTGCCCAGGCCATGCGGCAGAGACTCTTTGAGGAGGTGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGATCGGAGGGCTATTCATTTGAAA
ATTCCACGTCTTGTATTCTCGCATTCCTCCTCCCTCCCTCCTTCCCTCTC
TTCCTTCCTCCTTCCCTCACTGACATGGATAGCCGGGCATCGAAAGGTAG
CTCGTTAGGACTGTAGAAGATAGAAAGACAAAGAGAAACACACGCAAAGA
GAGAGAGGGAGAGAATTCACTGTATTTCCCTCCTCCCTTCTTCTCCTCCC
TGCCTCTCTCCCTTCCTTCCTCACTCATTCCCCAGCTGGGCTTCACGTCC
TGTGCGGGCATTAGCAACAACAAAATGCTTGCCAAGATGGCTGGAGAGCT
TCACAAGCCCAATGCTCAGACCACGCTCTTGCCGGTGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAAGGAAAGAGGGGAGGTCATGCCTTGACGCTTTTC
CTCAATCAATCTCATTTCCCTCTTCTCACTCTTATCCCTCTCCTTCCTTT
CCCCTCATCCTCCCCCTCTTCCTCCCATTCCTCCTCCCCCCCCCCTCTCG
TCTCCTCCTCCTCCTCAAAGGGAGATGCCATCCCTTTCCTCTCCCCCCTT
CCTCCTCGTCGCTTGCCAGGGTGTGGGTGGGCGACGGCTCGCTCGCTCCA
AAGGCTGGGCATAGATACTGTGGCTTGCCTGCGAGAAATATCACTCTCGA
CTCTAGCACCCGCGGTGGGGGAGATGCAGGTAGGGAAGGAGGAAGGGAGG
GAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGGAGGAGGAAGGGTGTGG
ACATGGGAAGGGTGCAAGGGCGAGCATGTATACCTGTTTCACTCTGCCTC
TCCTTTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTTCCTCCCTCC
CTCCCTCCCTCCCTGTAGGCCAAGCGCCTCCTATCCCTCTCCTGGGGTGT
CGATCCGTCACCCCTTCGTCCCTCCGTCCCTCCCTCCCTCCCCAAATCTA
TGTCAGAAGAAGACTCGTTCCATTCGTCCACTGTCACTGCTGCTGCTGCT
GCAACTGCAGCCGGTACTTCTTTTACGGTGACGACGAGAGAAGAAGCAGC
ACGTCAGCTGAGGCGTTTGGTGACTCATTTGGTGAAGAGAATTGAAGACA
GGAGGGTTGCGTATGGAGAGGTGAGGACGGAGGGAGGGCGGGAGGGCGGG
AGGGCGGGAGGGTGGGAGGGGGATGGTCCATGTGTCATGGATTCTGTGGT
TGTATTGAAGGTTTCATGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTC
TCCCTCCCTTCTTTTTTCCAGCTCCCCCATACCCTCCGCCTCACCATCAT
CCGTCGGAATCCTCCTCCTGCCTCCTCCTCCTCCTCCACCCCGTCCTCCT
CGACCCATAGCAGGAAAGAATCCCGCCAAGCCACTCTCAAAAATCCGCTC
TCGATTTTCTGTCCTCCTCCTCTTCCTTCCCCTCCTCTTCCACTATCCTC
CACCCTGCCATCTCCATCTCGCCCTTCCTCCCTCCCTCCCTCCCTCCCTC
CCCCTCTAGAGGTAGTCGATGGACGCGTCGTTTCTGCTTTATTCCAAGAA
GCTAAAACTCTCCTTTTCGATCGCCTCCTTCTCCCTCCCTCACTTCCTCC
GTCCCTTCCTCCCTCTTCTTCGTTTATCCTCGTCATGATGAATGTTTGTG
TGAGTAATTTTCAGCCTGTCCCTGGAGGAAGGGCAGGAAGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGGCAGGTGGTTCACCCTCGATTCT
AAAGTACGTGCAGCGGCCACAGGAGGAGGAGGGGGAGGAGGAGGAAGAAA
AGAAAAATAG

Coding sequence (CDS) from alignment at chr24:536966..541125+

>NO24G02030.3 ID=NO24G02030.3|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr24:536966..541125+ (Nannochloropsis oceanica)
ATGAAACCACGTTTTCATGCACATGTACATCGCAGGATCGTAGTTAAGTG
TGCATATCATAGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAAG
AGGAGGAGGACGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTGC
TTCTTGACGGAGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAAC
AAAGCATGACCGTCGTGTCATTGTTCATATCGACCTGGATTGTTTCTACG
CCCAATGTGAGATGAGGCACAACCCATCCCTTCGCGACCGACCCATGGCC
ATCCAGCAGAAGTACCTCCTCGTCACCTCCAATCAAGTTGCGCGAAACCA
GGGAGTCCACAAAATGCAGTCCCTCGCTGAGGCCCGCCGGCGATGTCCAG
AGCTGGTGGTGGTCAATGGGGAGGACTTGACTCGGTATAGGGAATGCTCG
GAGCTGATATATGATGTCTTGAAGACCTTCACTCCCAAGCTGGAGAGGCT
GGGCTTGGACGAGACCTACCTCGACATCACTGCCATCATCGACGCCGCTC
TTGGGAAGGAAGGGGAGGGAGGGGGAGAGGAAGGGGGGAAGGGGGAGGGG
GAGGAGGCTACGGAGGCCATGCGGCAGAGACTCTTTGAGGAGCTGGGCTT
CACGTCCTGTGCGGGCATTAGCAACAACAAAATGCTTGCCAAGATGGCTG
GAGAGCTTCACAAGCCCAATGCTCAGACCACGCTCTTGCCGGGAGATGCC
ATCCCTTTCCTCTCCCCCCTTCCTCCTCGTCGCTTGCCAGGGTGTGGGTG
GGCGACGGCTCGCTCGCTCCAAAGGCTGGGCATAGATACTGTGGCTTGCC
TGCGAGAAATATCACTCTCGACTCTAGCACCCGCGGTGGGGGAGATGCAG
GCCAAGCGCCTCCTATCCCTCTCCTGGGGTGTCGATCCGTCACCCCTTCG
TCCCTCCGTCCCTCCCTCCCTCCCCAAATCTATGTCAGAAGAAGACTCGT
TCCATTCGTCCACTGTCACTGCTGCTGCTGCTGCAACTGCAGCCGGTACT
TCTTTTACGGTGACGACGAGAGAAGAAGCAGCACGTCAGCTGAGGCGTTT
GGTGACTCATTTGGTGAAGAGAATTGAAGACAGGAGGGTTGCGTATGGAG
AGCTCCCCCATACCCTCCGCCTCACCATCATCCGTCGGAATCCTCCTCCT
GCCTCCTCCTCCTCCTCCACCCCGTCCTCCTCGACCCATAGCAGGAAAGA
ATCCCGCCAAGCCACTCTCAAAAATCCGCTCTCGATTTTCTTACGTGCAG
CGGCCACAGGAGGAGGAGGGGGAGGAGGAGGAAGAAAAGAAAAATAG

Synonyms

Publications