NO24G02030.3, NO24G02030.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02030.3
Unique NameNO24G02030.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1898
Alignment locationchr24:536966..541125 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:536966..541125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02030.3 vs.
Match: XP_016142041.1 (PREDICTED: DNA polymerase iota [Sinocyclocheilus grahami])

HSP 1 Score: 230.7 bits (587), Expect = 8.800e-57
Identity = 147/376 (39.10%), Postives = 211/376 (56.12%), Query Frame = 0 
Query:   35 EEDEIEEIDDEESSSCFLTEARDAAIGRSSNATKHDRRVIVHIDLDCFYAQCEMRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK---------------EGEGGGEEGGK-GEGEEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPR-RLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVPPSLPKSMSEEDSFHSSTVTAAAAATAAGTSFTVTTREEAARQLRRLVTHLVKRIEDRRVAYGELPHTLRLTI 394
            + DE  + D + S    + E   ++  R    T   +RVI+HIDLDCFYAQ EM  NP+LR++P+ IQQKYL+VT N VAR  GV+K+ S+ +A  +CP+LV+V GEDLT YRE S  + ++L ++ P +ERLG DE ++D+T +++  L +               E     EE  +   G      MRQ +F  LG T CAGI+NNK+LAK+     KPN QTTLLP      +S L    ++PG G+ T   L+ LG+ +V  L+  SL+ L    GE+ AKR+ +L+ G+D SP+ P+ P   P+S+S+EDSF                   ++T EE  ++   L+T L +R+       G  PHT RLTI
Sbjct:    2 DTDEEGDNDWDRSLESDMLETEGSSTDR---VTSISQRVILHIDLDCFYAQVEMIRNPALRNKPLGIQQKYLIVTCNYVAREHGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLKETCISDLSFNGHVYKHESMAVDEENARLAVGSVIAAEMRQAIFSTLGLTGCAGIANNKLLAKLVAGTFKPNQQTTLLPYSTAELMSSLTGLIKVPGIGYKTREKLKALGLVSVRDLQLYSLADLVREFGEVTAKRIQNLACGIDDSPVTPAGP---PQSLSDEDSFKK-----------------ISTLEEVQKKTEELLTSLTERMHKD----GRRPHTFRLTI 350
The following BLAST results are available for this feature:
BLAST of NO24G02030.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800Expect = 8.80e-57 / Id = 39.10SequenceXP_016142041.1
Match NameE-valueIdentityDescription
XP_016142041.18.800e-5739.10PREDICTED: DNA polymerase iota [Sinocyclocheilus g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02030NO24G02030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02030.3NO24G02030.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02030.3.cds1NO24G02030.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds2NO24G02030.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds3NO24G02030.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds4NO24G02030.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds5NO24G02030.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds6NO24G02030.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds7NO24G02030.3.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds8NO24G02030.3.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds9NO24G02030.3.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.3.cds10NO24G02030.3.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02030.3 ID=NO24G02030.3|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=mRNA|length=1898bp
AAGCACCCGGCGTCGCATACCACCCAGACGCCCCTCTCAGCGGCGTCTGC
CCCCTCATTTTTTTTAACTTTCGCACGTGGCAACCAATCGGCATATTATG
CAGCGAGCTACCTTATGCGACCCATTTGGTCACAATGGCGAGCCCGGTCA
AGGCTCATTGTCCGCCAGATGTTTGGCGCGTCTTGACAGGCAACTCACAG
AGAAGAGGGCAATCCAGCTCGACATGCACCACGTCCCGCACTCTCAACGA
AGCTTCTCCTACCACGGTACCGTCTCTGCCTCCACTTTCCTCTCGTCGCC
ACCCTCCTCCTCCTCCTCGTCCTTCACCTTCTCCCCCCCAAACCTCCTCC
CCTTCCCCCTCCCCCTCCAACCTCCTCTCCCCACCTATGATGGAGATGTC
TAGTTGTTAGCGACAAAGGTGATCATAAAATGTCCGTCTGCGCTTCGCAA
ACGGCTGTGTGATACAGGCAAATTGGTGGGTAAAGCATGGTCCCTTCATG
AGATAAAAGTATGTATGCACGAGAAGCAAGCCCGATTTCCTTGCCTCGCT
GATGAAACCACGTTTTCATGCACATGTACATCGCAGGATCGTAGTTAAGT
GTGCATATCATAGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAA
GAGGAGGAGGACGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTG
CTTCTTGACGGAGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAA
CAAAGCATGACCGTCGTGTCATTGTTCATATCGACCTGGATTGTTTCTAC
GCCCAATGTGAGATGAGGCACAACCCATCCCTTCGCGACCGACCCATGGC
CATCCAGCAGAAGTACCTCCTCGTCACCTCCAATCAAGTTGCGCGAAACC
AGGGAGTCCACAAAATGCAGTCCCTCGCTGAGGCCCGCCGGCGATGTCCA
GAGCTGGTGGTGGTCAATGGGGAGGACTTGACTCGGTATAGGGAATGCTC
GGAGCTGATATATGATGTCTTGAAGACCTTCACTCCCAAGCTGGAGAGGC
TGGGCTTGGACGAGACCTACCTCGACATCACTGCCATCATCGACGCCGCT
CTTGGGAAGGAAGGGGAGGGAGGGGGAGAGGAAGGGGGGAAGGGGGAGGG
GGAGGAGGCTACGGAGGCCATGCGGCAGAGACTCTTTGAGGAGCTGGGCT
TCACGTCCTGTGCGGGCATTAGCAACAACAAAATGCTTGCCAAGATGGCT
GGAGAGCTTCACAAGCCCAATGCTCAGACCACGCTCTTGCCGGGAGATGC
CATCCCTTTCCTCTCCCCCCTTCCTCCTCGTCGCTTGCCAGGGTGTGGGT
GGGCGACGGCTCGCTCGCTCCAAAGGCTGGGCATAGATACTGTGGCTTGC
CTGCGAGAAATATCACTCTCGACTCTAGCACCCGCGGTGGGGGAGATGCA
GGCCAAGCGCCTCCTATCCCTCTCCTGGGGTGTCGATCCGTCACCCCTTC
GTCCCTCCGTCCCTCCCTCCCTCCCCAAATCTATGTCAGAAGAAGACTCG
TTCCATTCGTCCACTGTCACTGCTGCTGCTGCTGCAACTGCAGCCGGTAC
TTCTTTTACGGTGACGACGAGAGAAGAAGCAGCACGTCAGCTGAGGCGTT
TGGTGACTCATTTGGTGAAGAGAATTGAAGACAGGAGGGTTGCGTATGGA
GAGCTCCCCCATACCCTCCGCCTCACCATCATCCGTCGGAATCCTCCTCC
TGCCTCCTCCTCCTCCTCCACCCCGTCCTCCTCGACCCATAGCAGGAAAG
AATCCCGCCAAGCCACTCTCAAAAATCCGCTCTCGATTTTCTTACGTGCA
GCGGCCACAGGAGGAGGAGGGGGAGGAGGAGGAAGAAAAGAAAAATAG
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protein sequence of NO24G02030.3

>NO24G02030.3-protein ID=NO24G02030.3-protein|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MKPRFHAHVHRRIVVKCAYHSLCRESMLDEEEEEEEDEIEEIDDEESSSC
FLTEARDAAIGRSSNATKHDRRVIVHIDLDCFYAQCEMRHNPSLRDRPMA
IQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECS
ELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGKEGEGGGEEGGKGEG
EEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDA
IPFLSPLPPRRLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQ
AKRLLSLSWGVDPSPLRPSVPPSLPKSMSEEDSFHSSTVTAAAAATAAGT
SFTVTTREEAARQLRRLVTHLVKRIEDRRVAYGELPHTLRLTIIRRNPPP
ASSSSSTPSSSTHSRKESRQATLKNPLSIFLRAAATGGGGGGGGRKEK*
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mRNA from alignment at chr24:536966..541125+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02030.3 ID=NO24G02030.3|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=mRNA|length=4160bp|location=Sequence derived from alignment at chr24:536966..541125+ (Nannochloropsis oceanica)
AAGCACCCGGCGTCGCATACCACCCAGACGCCCCTCTCAGCGGCGTCTGC
CCCCTCATTTTTTTTAACTTTCGCACGTGGCAACCAATCGGCATATTATG
CAGCGAGCTACCTTATGCGACCCATTTGGTCACAATGGCGAGCCCGGTCA
AGGCTCATTGTCCGCCAGATGTTTGGCGCGTCTTGACAGGCAACTCACAG
AGAAGAGGGCAATCCAGCTCGACATGCACCACGTCCCGCACTCTCAACGA
AGCTTCTCCTACCACGGTACCGTCTCTGCCTCCACTTTCCTCTCGTCGCC
ACCCTCCTCCTCCTCCTCGTCCTTCACCTTCTCCCCCCCAAACCTCCTCC
CCTTCCCCCTCCCCCTCCAACCTCCTCTCCCCACCTATGATGGAGATGTC
TAGTTGTTAGCGACAAAGGTGATCATAAAATGTCCGTCTGCGCTTCGCAA
ACGGCTGTGTGATACAGGCAAATTGGTGGGTAAAGCATGGTCCCTTCATG
AGATAAAAGTATGTATGCACGAGAAGCAAGCCCGATTTCCTTGCCTCGCT
GATGAAACCACGTTTTCATGCACATGTACATCGCAGGATCGTAGTTAAGT
GTGCATATCATAGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAA
GAGGAGGAGGACGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTG
CTTCTTGACGGAGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAA
CAAAGCATGACCGTCGTGTCATTGTTCATATCGGTAAGCGAGGGCAGGGG
TGAGAAGATAGGAAAAACGAAAGGGAAGGGAGTACGGAAGGCAATCGCAG
GTGAGTGAATGGAAGGGATGTGAGGAGGGAATGGAACTAAATACGGTCGA
TGCAAGGACTTTACACGTCCTACACGCATATTTGTAAATCCTCAATCCTC
ATTATCCCTATCCCTCCTTCCCCTGTTCATTCTCGTCCCAACTCTCTCTT
CTCCTAGACCAACTAATCCACCCACCCTCCCTCCCTCCCTTCCTTCCTTC
CTCCCTCCTCCCCACAGACCTGGATTGTTTCTACGCCCAATGTGAGATGA
GGCACAACCCATCCCTTCGCGACCGACCCATGGCCATCCAGCAGAAGTAC
CTCCTCGTCACCTCCAATCAAGTTGCGCGAAACCAGGGAGTCCACAAAAT
GCAGGTTTGGCCCCCTCCCCCACTCCCTCCCTCCTTTTTTCACCCTCCTT
TTTTTCCATCCTTCTCATCCCCGTCTATTTCCTGTGTGCTTTTGACACCC
TCATGGATCAATTGAGGCTTCCTTTGGGGGAAATTTATTTGTAATATTTA
TTTGTATATTTTTGTAATTGAATTTATTTATACATATATGTGTGTTTATA
ATGTGTATTCATACACTACGCAGTACTTTAAGGAGCCACATTAAAAGGAT
GGTAGAAAATCCAACCTCGCCCTCCCTCCCTCCCGCCCTCCCTCCTCCCT
CCCTCTTCCCCTTCCTCACTCCCTCAGTCCCTCGCTGAGGCCCGCCGGCG
ATGTCCAGAGCTGGTGGTGGTCAATGGGGAGGACTTGACTCGGTATAGGG
AATGCTCGGAGCTGATATATGATGTCTTGAAGACCTTCACTCCCAAGCTG
GAGAGGCTGGTGGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAAGGGAAGGCAAGGCTAGCAAAATGCACTGAGATTGATTGATTGATTGA
TTGATTGATGGATTGATTGAGAGTTTGCATGGACCTTCTATTCATTCCTC
CCAGGGCTTGGACGATTGATTGATTGATTGATTGATTTGTGGATTCGCAG
CTATTGGCCTTGGTTGAGCCTCCTAAATCATCGAAATGTTTAATCAGTAA
GTCACGATACACGCACAATTCCCTCTCAGGGCTTGGACGAGACCTACCTC
GACATCACTGCCATCATCGACGCCGCTCTTGGGAAGGAAGGGGAGGGAGG
GGGAGAGGAAGGGGGGAAGGGGGAGGGGGAGGAGGCTACGGAGGTGCGAG
AGAAGACAATGGCAGCCTCCCCCCTCCCTCGTCCTCCCCTCGTCCTATAC
CTTTCCCCCTCCCTCGTCCTTGTCCTCCTTAGTCGGGAACCTGTACACCC
CGGGAGGGGGGGGAGGAGGGAGGGAAAAAGGGCGGGAACGGGAGCGGCAG
GAGCGTCAGCCCGCGTGTTGTACCTGCGGGTGTGTCGAGCGGTTGAAGGC
CGGTTCACACGTTGCCCAGGCCATGCGGCAGAGACTCTTTGAGGAGGTGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGATCGGAGGGCTATTCATTTGAAA
ATTCCACGTCTTGTATTCTCGCATTCCTCCTCCCTCCCTCCTTCCCTCTC
TTCCTTCCTCCTTCCCTCACTGACATGGATAGCCGGGCATCGAAAGGTAG
CTCGTTAGGACTGTAGAAGATAGAAAGACAAAGAGAAACACACGCAAAGA
GAGAGAGGGAGAGAATTCACTGTATTTCCCTCCTCCCTTCTTCTCCTCCC
TGCCTCTCTCCCTTCCTTCCTCACTCATTCCCCAGCTGGGCTTCACGTCC
TGTGCGGGCATTAGCAACAACAAAATGCTTGCCAAGATGGCTGGAGAGCT
TCACAAGCCCAATGCTCAGACCACGCTCTTGCCGGTGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAAGGAAAGAGGGGAGGTCATGCCTTGACGCTTTTC
CTCAATCAATCTCATTTCCCTCTTCTCACTCTTATCCCTCTCCTTCCTTT
CCCCTCATCCTCCCCCTCTTCCTCCCATTCCTCCTCCCCCCCCCCTCTCG
TCTCCTCCTCCTCCTCAAAGGGAGATGCCATCCCTTTCCTCTCCCCCCTT
CCTCCTCGTCGCTTGCCAGGGTGTGGGTGGGCGACGGCTCGCTCGCTCCA
AAGGCTGGGCATAGATACTGTGGCTTGCCTGCGAGAAATATCACTCTCGA
CTCTAGCACCCGCGGTGGGGGAGATGCAGGTAGGGAAGGAGGAAGGGAGG
GAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGGAGGAGGAAGGGTGTGG
ACATGGGAAGGGTGCAAGGGCGAGCATGTATACCTGTTTCACTCTGCCTC
TCCTTTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTTCCTCCCTCC
CTCCCTCCCTCCCTGTAGGCCAAGCGCCTCCTATCCCTCTCCTGGGGTGT
CGATCCGTCACCCCTTCGTCCCTCCGTCCCTCCCTCCCTCCCCAAATCTA
TGTCAGAAGAAGACTCGTTCCATTCGTCCACTGTCACTGCTGCTGCTGCT
GCAACTGCAGCCGGTACTTCTTTTACGGTGACGACGAGAGAAGAAGCAGC
ACGTCAGCTGAGGCGTTTGGTGACTCATTTGGTGAAGAGAATTGAAGACA
GGAGGGTTGCGTATGGAGAGGTGAGGACGGAGGGAGGGCGGGAGGGCGGG
AGGGCGGGAGGGTGGGAGGGGGATGGTCCATGTGTCATGGATTCTGTGGT
TGTATTGAAGGTTTCATGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTC
TCCCTCCCTTCTTTTTTCCAGCTCCCCCATACCCTCCGCCTCACCATCAT
CCGTCGGAATCCTCCTCCTGCCTCCTCCTCCTCCTCCACCCCGTCCTCCT
CGACCCATAGCAGGAAAGAATCCCGCCAAGCCACTCTCAAAAATCCGCTC
TCGATTTTCTGTCCTCCTCCTCTTCCTTCCCCTCCTCTTCCACTATCCTC
CACCCTGCCATCTCCATCTCGCCCTTCCTCCCTCCCTCCCTCCCTCCCTC
CCCCTCTAGAGGTAGTCGATGGACGCGTCGTTTCTGCTTTATTCCAAGAA
GCTAAAACTCTCCTTTTCGATCGCCTCCTTCTCCCTCCCTCACTTCCTCC
GTCCCTTCCTCCCTCTTCTTCGTTTATCCTCGTCATGATGAATGTTTGTG
TGAGTAATTTTCAGCCTGTCCCTGGAGGAAGGGCAGGAAGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGGCAGGTGGTTCACCCTCGATTCT
AAAGTACGTGCAGCGGCCACAGGAGGAGGAGGGGGAGGAGGAGGAAGAAA
AGAAAAATAG
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Coding sequence (CDS) from alignment at chr24:536966..541125+

>NO24G02030.3 ID=NO24G02030.3|Name=NO24G02030.3|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr24:536966..541125+ (Nannochloropsis oceanica)
ATGAAACCACGTTTTCATGCACATGTACATCGCAGGATCGTAGTTAAGTG
TGCATATCATAGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAAG
AGGAGGAGGACGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTGC
TTCTTGACGGAGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAAC
AAAGCATGACCGTCGTGTCATTGTTCATATCGACCTGGATTGTTTCTACG
CCCAATGTGAGATGAGGCACAACCCATCCCTTCGCGACCGACCCATGGCC
ATCCAGCAGAAGTACCTCCTCGTCACCTCCAATCAAGTTGCGCGAAACCA
GGGAGTCCACAAAATGCAGTCCCTCGCTGAGGCCCGCCGGCGATGTCCAG
AGCTGGTGGTGGTCAATGGGGAGGACTTGACTCGGTATAGGGAATGCTCG
GAGCTGATATATGATGTCTTGAAGACCTTCACTCCCAAGCTGGAGAGGCT
GGGCTTGGACGAGACCTACCTCGACATCACTGCCATCATCGACGCCGCTC
TTGGGAAGGAAGGGGAGGGAGGGGGAGAGGAAGGGGGGAAGGGGGAGGGG
GAGGAGGCTACGGAGGCCATGCGGCAGAGACTCTTTGAGGAGCTGGGCTT
CACGTCCTGTGCGGGCATTAGCAACAACAAAATGCTTGCCAAGATGGCTG
GAGAGCTTCACAAGCCCAATGCTCAGACCACGCTCTTGCCGGGAGATGCC
ATCCCTTTCCTCTCCCCCCTTCCTCCTCGTCGCTTGCCAGGGTGTGGGTG
GGCGACGGCTCGCTCGCTCCAAAGGCTGGGCATAGATACTGTGGCTTGCC
TGCGAGAAATATCACTCTCGACTCTAGCACCCGCGGTGGGGGAGATGCAG
GCCAAGCGCCTCCTATCCCTCTCCTGGGGTGTCGATCCGTCACCCCTTCG
TCCCTCCGTCCCTCCCTCCCTCCCCAAATCTATGTCAGAAGAAGACTCGT
TCCATTCGTCCACTGTCACTGCTGCTGCTGCTGCAACTGCAGCCGGTACT
TCTTTTACGGTGACGACGAGAGAAGAAGCAGCACGTCAGCTGAGGCGTTT
GGTGACTCATTTGGTGAAGAGAATTGAAGACAGGAGGGTTGCGTATGGAG
AGCTCCCCCATACCCTCCGCCTCACCATCATCCGTCGGAATCCTCCTCCT
GCCTCCTCCTCCTCCTCCACCCCGTCCTCCTCGACCCATAGCAGGAAAGA
ATCCCGCCAAGCCACTCTCAAAAATCCGCTCTCGATTTTCTTACGTGCAG
CGGCCACAGGAGGAGGAGGGGGAGGAGGAGGAAGAAAAGAAAAATAG
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Synonyms
Publications