NO24G02030.2, NO24G02030.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02030.2
Unique NameNO24G02030.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1787
Alignment locationchr24:536966..541125 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:536966..541125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G02030.2 vs.
Match: XP_016142041.1 (PREDICTED: DNA polymerase iota [Sinocyclocheilus grahami])

HSP 1 Score: 229.6 bits (584), Expect = 1.900e-56
Identity = 147/376 (39.10%), Postives = 211/376 (56.12%), Query Frame = 0 
Query:    9 EEDEIEEIDDEESSSCFLTEARDAAIGRSSNATKHDRRVIVHIDLDCFYAQCEMRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLAEARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDITAIIDAALGK---------------EGEGGGEEGGK-GEGEEATEAMRQRLFEELGFTSCAGISNNKMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPR-RLPGCGWATARSLQRLGIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVPPSLPKSMSEEDSFHSSTVTAAAAATAAGTSFTVTTREEAARQLRRLVTHLVKRIEDRRVAYGELPHTLRLTI 368
            + DE  + D + S    + E   ++  R    T   +RVI+HIDLDCFYAQ EM  NP+LR++P+ IQQKYL+VT N VAR  GV+K+ S+ +A  +CP+LV+V GEDLT YRE S  + ++L ++ P +ERLG DE ++D+T +++  L +               E     EE  +   G      MRQ +F  LG T CAGI+NNK+LAK+     KPN QTTLLP      +S L    ++PG G+ T   L+ LG+ +V  L+  SL+ L    GE+ AKR+ +L+ G+D SP+ P+ P   P+S+S+EDSF                   ++T EE  ++   L+T L +R+       G  PHT RLTI
Sbjct:    2 DTDEEGDNDWDRSLESDMLETEGSSTDR---VTSISQRVILHIDLDCFYAQVEMIRNPALRNKPLGIQQKYLIVTCNYVAREHGVNKLMSVTDAVEKCPQLVLVKGEDLTHYREMSYKVTELLMSYCPLVERLGFDENFMDVTEMVERRLKETCISDLSFNGHVYKHESMAVDEENARLAVGSVIAAEMRQAIFSTLGLTGCAGIANNKLLAKLVAGTFKPNQQTTLLPYSTAELMSSLTGLIKVPGIGYKTREKLKALGLVSVRDLQLYSLADLVREFGEVTAKRIQNLACGIDDSPVTPAGP---PQSLSDEDSFKK-----------------ISTLEEVQKKTEELLTSLTERMHKD----GRRPHTFRLTI 350
The following BLAST results are available for this feature:
BLAST of NO24G02030.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_016142041.11.900e-5639.10PREDICTED: DNA polymerase iota [Sinocyclocheilus g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02030NO24G02030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02030.2NO24G02030.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02030.2.cds1NO24G02030.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds2NO24G02030.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds3NO24G02030.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds4NO24G02030.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds5NO24G02030.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds6NO24G02030.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds7NO24G02030.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds8NO24G02030.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds9NO24G02030.2.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02030.2.cds10NO24G02030.2.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02030.2 ID=NO24G02030.2|Name=NO24G02030.2|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp
AAGCACCCGGCGTCGCATACCACCCAGACGCCCCTCTCAGCGGCGTCTGC
CCCCTCATTTTTTTTAACTTTCGCACGTGGCAACCAATCGGCATATTATG
CAGCGAGCTACCTTATGCGACCCATTTGGTCACAATGGCGAGCCCGGTCA
AGGCTCATTGTCCGCCAGATGTTTGGCGCGTCTTGACAGGCAACTCACAG
AGAAGAGGGCAATCCAGCTCGACATGCACCACGTCCCGCACTCTCAACGA
AGCTTCTCCTACCACGGTACCGTCTCTGCCTCCACTTTCCTCTCGTCGCC
ACCCTCCTCCTCCTCCTCGTCCTTCACCTTCTCCCCCCCAAACCTCCTCC
CCTTCCCCCTCCCCCTCCAACCTCCTCTCCCCACCTATGATGGAGATGTC
TAGTTGTTAGCGACAAAGGTGATCATAAAATGTCCGTCTGCGCTTCGCAA
ACGGCTGTGTGATACAGGCAAATTGGATCGTAGTTAAGTGTGCATATCAT
AGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAAGAGGAGGAGGA
CGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTGCTTCTTGACGG
AGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAACAAAGCATGAC
CGTCGTGTCATTGTTCATATCGACCTGGATTGTTTCTACGCCCAATGTGA
GATGAGGCACAACCCATCCCTTCGCGACCGACCCATGGCCATCCAGCAGA
AGTACCTCCTCGTCACCTCCAATCAAGTTGCGCGAAACCAGGGAGTCCAC
AAAATGCAGTCCCTCGCTGAGGCCCGCCGGCGATGTCCAGAGCTGGTGGT
GGTCAATGGGGAGGACTTGACTCGGTATAGGGAATGCTCGGAGCTGATAT
ATGATGTCTTGAAGACCTTCACTCCCAAGCTGGAGAGGCTGGGCTTGGAC
GAGACCTACCTCGACATCACTGCCATCATCGACGCCGCTCTTGGGAAGGA
AGGGGAGGGAGGGGGAGAGGAAGGGGGGAAGGGGGAGGGGGAGGAGGCTA
CGGAGGCCATGCGGCAGAGACTCTTTGAGGAGCTGGGCTTCACGTCCTGT
GCGGGCATTAGCAACAACAAAATGCTTGCCAAGATGGCTGGAGAGCTTCA
CAAGCCCAATGCTCAGACCACGCTCTTGCCGGGAGATGCCATCCCTTTCC
TCTCCCCCCTTCCTCCTCGTCGCTTGCCAGGGTGTGGGTGGGCGACGGCT
CGCTCGCTCCAAAGGCTGGGCATAGATACTGTGGCTTGCCTGCGAGAAAT
ATCACTCTCGACTCTAGCACCCGCGGTGGGGGAGATGCAGGCCAAGCGCC
TCCTATCCCTCTCCTGGGGTGTCGATCCGTCACCCCTTCGTCCCTCCGTC
CCTCCCTCCCTCCCCAAATCTATGTCAGAAGAAGACTCGTTCCATTCGTC
CACTGTCACTGCTGCTGCTGCTGCAACTGCAGCCGGTACTTCTTTTACGG
TGACGACGAGAGAAGAAGCAGCACGTCAGCTGAGGCGTTTGGTGACTCAT
TTGGTGAAGAGAATTGAAGACAGGAGGGTTGCGTATGGAGAGCTCCCCCA
TACCCTCCGCCTCACCATCATCCGTCGGAATCCTCCTCCTGCCTCCTCCT
CCTCCTCCACCCCGTCCTCCTCGACCCATAGCAGGAAAGAATCCCGCCAA
GCCACTCTCAAAAATCCGCTCTCGATTTTCTTACGTGCAGCGGCCACAGG
AGGAGGAGGGGGAGGAGGAGGAAGAAAAGAAAAATAG
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protein sequence of NO24G02030.2

>NO24G02030.2-protein ID=NO24G02030.2-protein|Name=NO24G02030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MLDEEEEEEEDEIEEIDDEESSSCFLTEARDAAIGRSSNATKHDRRVIVH
IDLDCFYAQCEMRHNPSLRDRPMAIQQKYLLVTSNQVARNQGVHKMQSLA
EARRRCPELVVVNGEDLTRYRECSELIYDVLKTFTPKLERLGLDETYLDI
TAIIDAALGKEGEGGGEEGGKGEGEEATEAMRQRLFEELGFTSCAGISNN
KMLAKMAGELHKPNAQTTLLPGDAIPFLSPLPPRRLPGCGWATARSLQRL
GIDTVACLREISLSTLAPAVGEMQAKRLLSLSWGVDPSPLRPSVPPSLPK
SMSEEDSFHSSTVTAAAAATAAGTSFTVTTREEAARQLRRLVTHLVKRIE
DRRVAYGELPHTLRLTIIRRNPPPASSSSSTPSSSTHSRKESRQATLKNP
LSIFLRAAATGGGGGGGGRKEK*
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mRNA from alignment at chr24:536966..541125+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02030.2 ID=NO24G02030.2|Name=NO24G02030.2|organism=Nannochloropsis oceanica|type=mRNA|length=4160bp|location=Sequence derived from alignment at chr24:536966..541125+ (Nannochloropsis oceanica)
AAGCACCCGGCGTCGCATACCACCCAGACGCCCCTCTCAGCGGCGTCTGC
CCCCTCATTTTTTTTAACTTTCGCACGTGGCAACCAATCGGCATATTATG
CAGCGAGCTACCTTATGCGACCCATTTGGTCACAATGGCGAGCCCGGTCA
AGGCTCATTGTCCGCCAGATGTTTGGCGCGTCTTGACAGGCAACTCACAG
AGAAGAGGGCAATCCAGCTCGACATGCACCACGTCCCGCACTCTCAACGA
AGCTTCTCCTACCACGGTACCGTCTCTGCCTCCACTTTCCTCTCGTCGCC
ACCCTCCTCCTCCTCCTCGTCCTTCACCTTCTCCCCCCCAAACCTCCTCC
CCTTCCCCCTCCCCCTCCAACCTCCTCTCCCCACCTATGATGGAGATGTC
TAGTTGTTAGCGACAAAGGTGATCATAAAATGTCCGTCTGCGCTTCGCAA
ACGGCTGTGTGATACAGGCAAATTGGTGGGTAAAGCATGGTCCCTTCATG
AGATAAAAGTATGTATGCACGAGAAGCAAGCCCGATTTCCTTGCCTCGCT
GATGAAACCACGTTTTCATGCACATGTACATCGCAGGATCGTAGTTAAGT
GTGCATATCATAGTCTGTGCCGTGAATCCATGTTGGACGAGGAGGAGGAA
GAGGAGGAGGACGAGATCGAGGAGATAGACGACGAGGAAAGTAGCAGCTG
CTTCTTGACGGAGGCTCGTGATGCTGCAATTGGGAGAAGCAGCAATGCAA
CAAAGCATGACCGTCGTGTCATTGTTCATATCGGTAAGCGAGGGCAGGGG
TGAGAAGATAGGAAAAACGAAAGGGAAGGGAGTACGGAAGGCAATCGCAG
GTGAGTGAATGGAAGGGATGTGAGGAGGGAATGGAACTAAATACGGTCGA
TGCAAGGACTTTACACGTCCTACACGCATATTTGTAAATCCTCAATCCTC
ATTATCCCTATCCCTCCTTCCCCTGTTCATTCTCGTCCCAACTCTCTCTT
CTCCTAGACCAACTAATCCACCCACCCTCCCTCCCTCCCTTCCTTCCTTC
CTCCCTCCTCCCCACAGACCTGGATTGTTTCTACGCCCAATGTGAGATGA
GGCACAACCCATCCCTTCGCGACCGACCCATGGCCATCCAGCAGAAGTAC
CTCCTCGTCACCTCCAATCAAGTTGCGCGAAACCAGGGAGTCCACAAAAT
GCAGGTTTGGCCCCCTCCCCCACTCCCTCCCTCCTTTTTTCACCCTCCTT
TTTTTCCATCCTTCTCATCCCCGTCTATTTCCTGTGTGCTTTTGACACCC
TCATGGATCAATTGAGGCTTCCTTTGGGGGAAATTTATTTGTAATATTTA
TTTGTATATTTTTGTAATTGAATTTATTTATACATATATGTGTGTTTATA
ATGTGTATTCATACACTACGCAGTACTTTAAGGAGCCACATTAAAAGGAT
GGTAGAAAATCCAACCTCGCCCTCCCTCCCTCCCGCCCTCCCTCCTCCCT
CCCTCTTCCCCTTCCTCACTCCCTCAGTCCCTCGCTGAGGCCCGCCGGCG
ATGTCCAGAGCTGGTGGTGGTCAATGGGGAGGACTTGACTCGGTATAGGG
AATGCTCGGAGCTGATATATGATGTCTTGAAGACCTTCACTCCCAAGCTG
GAGAGGCTGGTGGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GAAGGGAAGGCAAGGCTAGCAAAATGCACTGAGATTGATTGATTGATTGA
TTGATTGATGGATTGATTGAGAGTTTGCATGGACCTTCTATTCATTCCTC
CCAGGGCTTGGACGATTGATTGATTGATTGATTGATTTGTGGATTCGCAG
CTATTGGCCTTGGTTGAGCCTCCTAAATCATCGAAATGTTTAATCAGTAA
GTCACGATACACGCACAATTCCCTCTCAGGGCTTGGACGAGACCTACCTC
GACATCACTGCCATCATCGACGCCGCTCTTGGGAAGGAAGGGGAGGGAGG
GGGAGAGGAAGGGGGGAAGGGGGAGGGGGAGGAGGCTACGGAGGTGCGAG
AGAAGACAATGGCAGCCTCCCCCCTCCCTCGTCCTCCCCTCGTCCTATAC
CTTTCCCCCTCCCTCGTCCTTGTCCTCCTTAGTCGGGAACCTGTACACCC
CGGGAGGGGGGGGAGGAGGGAGGGAAAAAGGGCGGGAACGGGAGCGGCAG
GAGCGTCAGCCCGCGTGTTGTACCTGCGGGTGTGTCGAGCGGTTGAAGGC
CGGTTCACACGTTGCCCAGGCCATGCGGCAGAGACTCTTTGAGGAGGTGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGATCGGAGGGCTATTCATTTGAAA
ATTCCACGTCTTGTATTCTCGCATTCCTCCTCCCTCCCTCCTTCCCTCTC
TTCCTTCCTCCTTCCCTCACTGACATGGATAGCCGGGCATCGAAAGGTAG
CTCGTTAGGACTGTAGAAGATAGAAAGACAAAGAGAAACACACGCAAAGA
GAGAGAGGGAGAGAATTCACTGTATTTCCCTCCTCCCTTCTTCTCCTCCC
TGCCTCTCTCCCTTCCTTCCTCACTCATTCCCCAGCTGGGCTTCACGTCC
TGTGCGGGCATTAGCAACAACAAAATGCTTGCCAAGATGGCTGGAGAGCT
TCACAAGCCCAATGCTCAGACCACGCTCTTGCCGGTGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAAGGAAAGAGGGGAGGTCATGCCTTGACGCTTTTC
CTCAATCAATCTCATTTCCCTCTTCTCACTCTTATCCCTCTCCTTCCTTT
CCCCTCATCCTCCCCCTCTTCCTCCCATTCCTCCTCCCCCCCCCCTCTCG
TCTCCTCCTCCTCCTCAAAGGGAGATGCCATCCCTTTCCTCTCCCCCCTT
CCTCCTCGTCGCTTGCCAGGGTGTGGGTGGGCGACGGCTCGCTCGCTCCA
AAGGCTGGGCATAGATACTGTGGCTTGCCTGCGAGAAATATCACTCTCGA
CTCTAGCACCCGCGGTGGGGGAGATGCAGGTAGGGAAGGAGGAAGGGAGG
GAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGGAGGAGGAAGGGTGTGG
ACATGGGAAGGGTGCAAGGGCGAGCATGTATACCTGTTTCACTCTGCCTC
TCCTTTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTTCCTCCCTCC
CTCCCTCCCTCCCTGTAGGCCAAGCGCCTCCTATCCCTCTCCTGGGGTGT
CGATCCGTCACCCCTTCGTCCCTCCGTCCCTCCCTCCCTCCCCAAATCTA
TGTCAGAAGAAGACTCGTTCCATTCGTCCACTGTCACTGCTGCTGCTGCT
GCAACTGCAGCCGGTACTTCTTTTACGGTGACGACGAGAGAAGAAGCAGC
ACGTCAGCTGAGGCGTTTGGTGACTCATTTGGTGAAGAGAATTGAAGACA
GGAGGGTTGCGTATGGAGAGGTGAGGACGGAGGGAGGGCGGGAGGGCGGG
AGGGCGGGAGGGTGGGAGGGGGATGGTCCATGTGTCATGGATTCTGTGGT
TGTATTGAAGGTTTCATGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTC
TCCCTCCCTTCTTTTTTCCAGCTCCCCCATACCCTCCGCCTCACCATCAT
CCGTCGGAATCCTCCTCCTGCCTCCTCCTCCTCCTCCACCCCGTCCTCCT
CGACCCATAGCAGGAAAGAATCCCGCCAAGCCACTCTCAAAAATCCGCTC
TCGATTTTCTGTCCTCCTCCTCTTCCTTCCCCTCCTCTTCCACTATCCTC
CACCCTGCCATCTCCATCTCGCCCTTCCTCCCTCCCTCCCTCCCTCCCTC
CCCCTCTAGAGGTAGTCGATGGACGCGTCGTTTCTGCTTTATTCCAAGAA
GCTAAAACTCTCCTTTTCGATCGCCTCCTTCTCCCTCCCTCACTTCCTCC
GTCCCTTCCTCCCTCTTCTTCGTTTATCCTCGTCATGATGAATGTTTGTG
TGAGTAATTTTCAGCCTGTCCCTGGAGGAAGGGCAGGAAGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGGCAGGTGGTTCACCCTCGATTCT
AAAGTACGTGCAGCGGCCACAGGAGGAGGAGGGGGAGGAGGAGGAAGAAA
AGAAAAATAG
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Coding sequence (CDS) from alignment at chr24:536966..541125+

>NO24G02030.2 ID=NO24G02030.2|Name=NO24G02030.2|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr24:536966..541125+ (Nannochloropsis oceanica)
ATGTTGGACGAGGAGGAGGAAGAGGAGGAGGACGAGATCGAGGAGATAGA
CGACGAGGAAAGTAGCAGCTGCTTCTTGACGGAGGCTCGTGATGCTGCAA
TTGGGAGAAGCAGCAATGCAACAAAGCATGACCGTCGTGTCATTGTTCAT
ATCGACCTGGATTGTTTCTACGCCCAATGTGAGATGAGGCACAACCCATC
CCTTCGCGACCGACCCATGGCCATCCAGCAGAAGTACCTCCTCGTCACCT
CCAATCAAGTTGCGCGAAACCAGGGAGTCCACAAAATGCAGTCCCTCGCT
GAGGCCCGCCGGCGATGTCCAGAGCTGGTGGTGGTCAATGGGGAGGACTT
GACTCGGTATAGGGAATGCTCGGAGCTGATATATGATGTCTTGAAGACCT
TCACTCCCAAGCTGGAGAGGCTGGGCTTGGACGAGACCTACCTCGACATC
ACTGCCATCATCGACGCCGCTCTTGGGAAGGAAGGGGAGGGAGGGGGAGA
GGAAGGGGGGAAGGGGGAGGGGGAGGAGGCTACGGAGGCCATGCGGCAGA
GACTCTTTGAGGAGCTGGGCTTCACGTCCTGTGCGGGCATTAGCAACAAC
AAAATGCTTGCCAAGATGGCTGGAGAGCTTCACAAGCCCAATGCTCAGAC
CACGCTCTTGCCGGGAGATGCCATCCCTTTCCTCTCCCCCCTTCCTCCTC
GTCGCTTGCCAGGGTGTGGGTGGGCGACGGCTCGCTCGCTCCAAAGGCTG
GGCATAGATACTGTGGCTTGCCTGCGAGAAATATCACTCTCGACTCTAGC
ACCCGCGGTGGGGGAGATGCAGGCCAAGCGCCTCCTATCCCTCTCCTGGG
GTGTCGATCCGTCACCCCTTCGTCCCTCCGTCCCTCCCTCCCTCCCCAAA
TCTATGTCAGAAGAAGACTCGTTCCATTCGTCCACTGTCACTGCTGCTGC
TGCTGCAACTGCAGCCGGTACTTCTTTTACGGTGACGACGAGAGAAGAAG
CAGCACGTCAGCTGAGGCGTTTGGTGACTCATTTGGTGAAGAGAATTGAA
GACAGGAGGGTTGCGTATGGAGAGCTCCCCCATACCCTCCGCCTCACCAT
CATCCGTCGGAATCCTCCTCCTGCCTCCTCCTCCTCCTCCACCCCGTCCT
CCTCGACCCATAGCAGGAAAGAATCCCGCCAAGCCACTCTCAAAAATCCG
CTCTCGATTTTCTTACGTGCAGCGGCCACAGGAGGAGGAGGGGGAGGAGG
AGGAAGAAAAGAAAAATAG
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Synonyms
Publications