NO24G02020, NO24G02020 (gene) Nannochloropsis oceanica

Overview
NameNO24G02020
Unique NameNO24G02020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2598
Alignment locationchr24:534165..536762 -

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Properties
Property NameValue
DescriptionProteasome subunit beta type-7
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:534165..536762 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR035216Proteasome_beta7
IPR001353Proteasome_sua/b
Homology
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_002678659.1 (predicted protein [Naegleria gruberi] >EFC45915.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 109.0 bits (271), Expect = 4.000e-20
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRDVQLVEG 279
            +G VSAA VLGGVD  GPSL+ I   G+T K+PF  MGSG  AAMSV E++++  +S +E   ++H AIS+GI NDLGSGS VD+CVI   G  +Y R   +  G
Sbjct:  125 QGHVSAALVLGGVDVNGPSLYTIYPHGSTDKLPFVTMGSGSLAAMSVFEAEYKDDMSEEEAKAIVHKAISAGIYNDLGSGSNVDLCVINKEGVANYIRGYDVPSG 229
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_020703071.1 (proteasome subunit beta type-7-A-like [Dendrobium catenatum] >PKU64229.1 Proteasome subunit beta type-7-A [Dendrobium catenatum])

HSP 1 Score: 108.6 bits (270), Expect = 5.200e-20
Identity = 59/102 (57.84%), Postives = 71/102 (69.61%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRDVQL 276
            +G VSAA VLGGVD TGP L  +   G+T  +PF  MGSG  AAMSV ES+++  LS +EGI L+  AI SGI NDLGSGS VD+CVI   G+ DY R+ QL
Sbjct:  130 QGYVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLSREEGIQLVSEAICSGIFNDLGSGSNVDVCVI-TKGKTDYLRNHQL 230
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BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_019105928.1 (PREDICTED: proteasome subunit beta type-7-A-like [Beta vulgaris subsp. vulgaris] >KMT07594.1 hypothetical protein BVRB_6g147260 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 108.2 bits (269), Expect = 6.800e-20
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRD 273
            +G VSAA VLGGVD +GP L  I   G+T  +PF  MGSG  AAMSV ES++R  LS +EGI ++  AISSGI NDLGSGS VD+CVI   G VDY R+
Sbjct:  130 QGHVSAALVLGGVDVSGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYREGLSREEGIKIVCEAISSGIFNDLGSGSNVDVCVI-TKGNVDYLRN 227
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: PRP82939.1 (hypothetical protein PROFUN_06716 [Planoprotostelium fungivorum])

HSP 1 Score: 108.2 bits (269), Expect = 6.800e-20
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRDVQLVEG 279
            +G VSAA +LGGVD TGPSL+ +   G+T  +PF  MGSG  AAMS+ E++++ +LSI+EGI L+H AIS+GI NDLGSGS VDI VI    +VD  R+ +   G
Sbjct:  130 QGHVSAALILGGVDITGPSLYTVYPHGSTDGLPFVTMGSGSLAAMSIFEAEYKPNLSIEEGIKLVHKAISAGIFNDLGSGSNVDITVI-TKDKVDVLRNYEKPNG 233
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_971003.1 (PREDICTED: proteasome subunit beta type-7 [Tribolium castaneum] >EFA03019.1 Proteasome subunit alpha type-5-like Protein [Tribolium castaneum])

HSP 1 Score: 107.8 bits (268), Expect = 8.900e-20
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRR 272
            +G + AA VLGGVD TGP L+ I   G+T K+P+T MGSG  AAM+V ES+ +  L  +EG+ L+  AI++GI NDLGSGS VD+C+I+  G VDYRR
Sbjct:  129 QGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYTTMGSGSLAAMAVFESRWKPDLDEEEGVKLVRDAIAAGIFNDLGSGSNVDVCIIR-KGSVDYRR 225
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_002179979.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC48170.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 107.1 bits (266), Expect = 1.500e-19
Identity = 52/99 (52.53%), Postives = 70/99 (70.71%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRD 273
            +G VSAA VLGGVD  GP ++QI   G+T K+P+T MGSG  AAMSV ES  + ++   + + L+  AI +GI NDLGSGS  D+C+I+ +G VDYRR+
Sbjct:   98 QGHVSAALVLGGVDVHGPHVYQIYPHGSTSKLPYTTMGSGSLAAMSVFESSWKENMEEADAVRLVQRAIGAGIFNDLGSGSNCDVCIIRLDGTVDYRRN 196
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_021743835.1 (proteasome subunit beta type-7-A-like [Chenopodium quinoa])

HSP 1 Score: 106.7 bits (265), Expect = 2.000e-19
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRD 273
            +G VSAA VLGGVD TGP L  I   G+T  +PF  MGSG  AAM+V ES++R  LS +EG+ ++  AISSGI NDLGSGS VD+CVI   G V+Y R+
Sbjct:  130 QGHVSAALVLGGVDVTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLSREEGVKIVCEAISSGIFNDLGSGSNVDVCVI-TKGNVEYLRN 227
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_021746770.1 (proteasome subunit beta type-7-A-like [Chenopodium quinoa])

HSP 1 Score: 106.7 bits (265), Expect = 2.000e-19
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRD 273
            +G VSAA VLGGVD TGP L  I   G+T  +PF  MGSG  AAM+V ES++R  LS +EG+ ++  AISSGI NDLGSGS VD+CVI   G V+Y R+
Sbjct:  130 QGHVSAALVLGGVDVTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLSREEGVKIVCEAISSGIFNDLGSGSNVDVCVI-TKGNVEYLRN 227
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_006438204.1 (proteasome subunit beta type-7-A isoform X1 [Citrus clementina] >ESR51444.1 hypothetical protein CICLE_v10032380mg [Citrus clementina])

HSP 1 Score: 105.9 bits (263), Expect = 3.400e-19
Identity = 59/102 (57.84%), Postives = 71/102 (69.61%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRDVQL 276
            +G V AA VLGGVDATGP L  I   G+T  +PF  MGSG  AAM+V ES++R  L+ +EGI+L+  AI SGI NDLGSGS VDICVI   G  +Y R+ QL
Sbjct:  131 QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI-TKGDKEYLRNHQL 231
[Close]
BLAST of NO24G02020 vs. NCBI_GenBank
Match: XP_006483984.1 (PREDICTED: proteasome subunit beta type-7-A isoform X1 [Citrus sinensis] >KDO82149.1 hypothetical protein CISIN_1g023965mg [Citrus sinensis])

HSP 1 Score: 105.9 bits (263), Expect = 3.400e-19
Identity = 59/102 (57.84%), Postives = 71/102 (69.61%), Query Frame = 0 
Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRDVQL 276
            +G V AA VLGGVDATGP L  I   G+T  +PF  MGSG  AAM+V ES++R  L+ +EGI+L+  AI SGI NDLGSGS VDICVI   G  +Y R+ QL
Sbjct:  131 QGHVQAALVLGGVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAVFESKYREGLTKEEGISLVCEAICSGIFNDLGSGSNVDICVI-TKGDKEYLRNHQL 231
The following BLAST results are available for this feature:
BLAST of NO24G02020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002678659.14.000e-2052.38predicted protein [Naegleria gruberi] >EFC45915.1 ... [more]
XP_020703071.15.200e-2057.84proteasome subunit beta type-7-A-like [Dendrobium ... [more]
XP_019105928.16.800e-2059.60PREDICTED: proteasome subunit beta type-7-A-like [... [more]
PRP82939.16.800e-2054.29hypothetical protein PROFUN_06716 [Planoprotosteli... [more]
XP_971003.18.900e-2055.10PREDICTED: proteasome subunit beta type-7 [Triboli... [more]
XP_002179979.11.500e-1952.53predicted protein, partial [Phaeodactylum tricornu... [more]
XP_021743835.12.000e-1957.58proteasome subunit beta type-7-A-like [Chenopodium... [more]
XP_021746770.12.000e-1957.58proteasome subunit beta type-7-A-like [Chenopodium... [more]
XP_006438204.13.400e-1957.84proteasome subunit beta type-7-A isoform X1 [Citru... [more]
XP_006483984.13.400e-1957.84PREDICTED: proteasome subunit beta type-7-A isofor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G02020.1NO24G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641129gene_7427Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G02020.1NO24G02020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G02020 ID=NO24G02020|Name=NO24G02020|organism=Nannochloropsis oceanica|type=gene|length=2598bp
ATGCAACCATCATACGTCAGACCAAGAAGAAGGCCCCTCCTGCTCCTCCT
CCGTCCTCCTCCTCTCGTTTCCGTGCTTCTTATCGTCGTCGCCATCCCAG
CTTTCTCCTCTTCCGTGCTCAGCGGTAGCAGTAGCACCACCAGCCTTCTG
CCATCCCCTCCTTCCTCCTACACCTTCTCCCCGGCTTCCCTCCCCCTCCT
CCTTCCTGCCCCAGTGTACTCAAGACAGGCACAACCATTGCGGGCGTCGT
CTGCGGTGATTCCATCGTGTTGGCAGCCGACACACGgtacgtctggcgag
gggaagatgggaaggttggaacacacatgctcataacagacacccatgcc
ttcctcaccgtccctccctcctctctcttcctgtctccctccctcccttt
aagctctaccatgggtcagATGGTGGCCGACAAAAATTGCGAGAAAATTC
ACAAGCTGGGCGACGCCATGTATTGCTGCGGGGCTGGCACGGCGgtacga
aggagggagggagggaggaggacgaaaacatggagaatgtgtgaaattat
ctaaggggaaaatataatttactcctttttccaatgaaaccaaatcttct
ccttccatttctccctccctaaccctccctttccttcctttttcgtgctc
tatttcctttcccttccttcccttcccctctctccgccagGCGGATGCGG
AACAACTCACGGCCGCAGTCCGCACGTGGCTTCGACTAGAGGCTTCCAAA
TCCATCACAACAATCCGCGAGCAGACCCTCCCTCCTTCCCGCCCTCGTTC
CCTCCCTCGTGTGGTGGCGGCCGCGAGGGCTTGTCCCGGCTGTTGGGGAA
GGGCGGAGTGTCAGCTGCCTTTGTATTGGGAGGGGTGGATGCTACCGGAC
CCTCCTTATTCCAGgtatatggccctccttctctccctccctccctcctt
cccttcctcctctctgttttgtaatgatcatcgatccatccctgtcttct
tccttcttacaggatgtcggtgtgtcgctgctattactgctgctgccacc
acccctactatttctgccaccatctctacaactgccacctctatctctgc
tgaaacccctccctccctccctccctccctccctccctccctccctcagA
TCGAGAGTGATGGCACGACCCAAAAAGTGCCTTTCACGGCCATGGGCAGT
GGCTTCGCCGCCGCCATGTCCGTACTGGAGTCACAGCACCGgcaaggcct
ccctccctccctctctccctccctccctccctctcttcctcctttccttc
ctccctctttccctttttttcttcctttcttcctaagtctccttcctgcc
ttgcttttgttctctctccctcactctctccttgcccttctgcggaacgt
acggtctcctcaacccctccatcgttcccttcctccctccctccctccct
ccctcagGTCCTCCCTAAGCATCCAGGAAGGCATCACGCTCTTGCACGCC
GCCATCAGCAGTGGGATTATGAACGACCTTGGGAGTGGCAGCCGCGTGGA
TATCTGTGTGATTCAGGCAAATGGGCAGgtaggtagggggagggagggag
ggagggagggaggcatgggaacagagctggcgttctacattttaaagaat
aggtaggaagggagggaggtaggtagggagggagggaggtagggagggag
gcatgggaacagagttgatgttcaacattttaaataataggtaggaaggg
agggaggtagggagggagggtgagaaggacgaaaggatggtaaatcgcct
taactcttgaaaaatagaacagagtgacactctcgtttttcctcttttct
ctctctctctctctctctctctctctctccctccctgtcttattcatctc
atgcacgcatatcctcttatgtaattaaatcttatcctctttaatttatt
aatctgtttttataattatctaatttaacacaattgattaaatttgtgtg
tgtctagGTGGATTACAGGCGCGATGTCCAGCTTGTTGAAGGGCCCTCCC
TCCCGCCCTCAATCTCGCCCTCCTCCTCCTCCTCTTCCGCCTCTTCTTCC
TCGTCAAGATACGCCTCAAAAGAAGATGTTCAGGAGGAGGAGGAAGAAGA
GGAGATGAAGAAGGAGAAGAAGGAAGAGGTAGAGAAGAAGGGGGCATCTT
CTCACCGCTCGCGTGGACGGCCTCCTCTTCCTTCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTTCCCTCGTCCCATTTCTCCTTCCACT
CCTTCCCTTTCTTCTCGTCATCGTCCTTCTCCTCCTCCTCCTCCTCCTCC
TTCTCATTCTCCCTCGGAGTCTCTTGACAGGAACGAAAAAGAACCACAAG
ACTTGTACGCCCTTCTCCTCCAACGCCGTCCCTCCCCTTCCGCCCTCCCC
CCCTCCCTTTCCCGCCCTCCTCTTCTCCTTCCCTTTCGAAGAAAGCAAAT
CCGCCTGGAGGGCACAATGGAGGGTGAGGGGAGGGAATGGAGGGAGGGAG
GGAGGGAGGGATGGTATTAAAGGAATGGGTGTCGGGGGAGATAGATGA
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protein sequence of NO24G02020.1

>NO24G02020.1-protein ID=NO24G02020.1-protein|Name=NO24G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MQPSYVRPRRRPLLLLLRPPPLVSVLLIVVAIPAFSSSVLSGSSSTTSLL
PSPPSSYTFSPASLPLLLPAPVYSRQAQPLRASSAVIPSCWQPTHDGGRQ
KLRENSQAGRRHVLLRGWHGGGCGTTHGRSPHVASTRGFQIHHNNPRADP
PSFPPSFPPSCGGGREGLSRLLGKGGVSAAFVLGGVDATGPSLFQIESDG
TTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDL
GSGSRVDICVIQANGQVDYRRDVQLVEGPSLPPSISPSSSSSSASSSSSR
YASKEDVQEEEEEEEMKKEKKEEVEKKGASSHRSRGRPPLPSPPPPPPPP
PPPPPSLVPFLLPLLPFLLVIVLLLLLLLLLLILPRSLLTGTKKNHKTCT
PFSSNAVPPLPPSPPPFPALLFSFPFEESKSAWRAQWRVRGGNGGREGGR
DGIKGMGVGGDR*
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Synonyms
Publications