NO24G02020.1, NO24G02020.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G02020.1
Unique Name	NO24G02020.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1389
Alignment location	chr24:534165..536762 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:534165..536762 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO24G02020.1 vs.
Match: XP_002678659.1 (predicted protein [Naegleria gruberi]; EFC45915.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 109.4 bits (272), Expect = 3.100e-20
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 0

Query:  174 KGGVSAAFVLGGVDATGPSLFQIESDGTTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDLGSGSRVDICVIQANGQVDYRRDVQLVEG 279
            +G VSAA VLGGVD  GPSL+ I   G+T K+PF  MGSG  AAMSV E++++  +S +E   ++H AIS+GI NDLGSGS VD+CVI   G  +Y R   +  G
Sbjct:  125 QGHVSAALVLGGVDVNGPSLYTIYPHGSTDKLPFVTMGSGSLAAMSVFEAEYKDDMSEEEAKAIVHKAISAGIYNDLGSGSNVDLCVINKEGVANYIRGYDVPSG 229

The following BLAST results are available for this feature:

BLAST of NO24G02020.1 vs.

BLAST of NO24G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_002678659.1	3.100e-20	52.38	predicted protein [Naegleria gruberi]; EFC45915.1 ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G02020	NO24G02020	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02020.1	NO24G02020.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G02020.1.cds1	NO24G02020.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02020.1.cds2	NO24G02020.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02020.1.cds3	NO24G02020.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02020.1.cds4	NO24G02020.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02020.1.cds5	NO24G02020.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G02020.1.cds6	NO24G02020.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:534165..536762-
coding sequence from alignment at chr24:534165..536762-

mRNA sequence

>NO24G02020.1 ID=NO24G02020.1|Name=NO24G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
ATGCAACCATCATACGTCAGACCAAGAAGAAGGCCCCTCCTGCTCCTCCT
CCGTCCTCCTCCTCTCGTTTCCGTGCTTCTTATCGTCGTCGCCATCCCAG
CTTTCTCCTCTTCCGTGCTCAGCGGTAGCAGTAGCACCACCAGCCTTCTG
CCATCCCCTCCTTCCTCCTACACCTTCTCCCCGGCTTCCCTCCCCCTCCT
CCTTCCTGCCCCAGTGTACTCAAGACAGGCACAACCATTGCGGGCGTCGT
CTGCGGTGATTCCATCGTGTTGGCAGCCGACACACGATGGTGGCCGACAA
AAATTGCGAGAAAATTCACAAGCTGGGCGACGCCATGTATTGCTGCGGGG
CTGGCACGGCGGCGGATGCGGAACAACTCACGGCCGCAGTCCGCACGTGG
CTTCGACTAGAGGCTTCCAAATCCATCACAACAATCCGCGAGCAGACCCT
CCCTCCTTCCCGCCCTCGTTCCCTCCCTCGTGTGGTGGCGGCCGCGAGGG
CTTGTCCCGGCTGTTGGGGAAGGGCGGAGTGTCAGCTGCCTTTGTATTGG
GAGGGGTGGATGCTACCGGACCCTCCTTATTCCAGATCGAGAGTGATGGC
ACGACCCAAAAAGTGCCTTTCACGGCCATGGGCAGTGGCTTCGCCGCCGC
CATGTCCGTACTGGAGTCACAGCACCGGTCCTCCCTAAGCATCCAGGAAG
GCATCACGCTCTTGCACGCCGCCATCAGCAGTGGGATTATGAACGACCTT
GGGAGTGGCAGCCGCGTGGATATCTGTGTGATTCAGGCAAATGGGCAGGT
GGATTACAGGCGCGATGTCCAGCTTGTTGAAGGGCCCTCCCTCCCGCCCT
CAATCTCGCCCTCCTCCTCCTCCTCTTCCGCCTCTTCTTCCTCGTCAAGA
TACGCCTCAAAAGAAGATGTTCAGGAGGAGGAGGAAGAAGAGGAGATGAA
GAAGGAGAAGAAGGAAGAGGTAGAGAAGAAGGGGGCATCTTCTCACCGCT
CGCGTGGACGGCCTCCTCTTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTTCCCTCGTCCCATTTCTCCTTCCACTCCTTCCCTT
TCTTCTCGTCATCGTCCTTCTCCTCCTCCTCCTCCTCCTCCTTCTCATTC
TCCCTCGGAGTCTCTTGACAGGAACGAAAAAGAACCACAAGACTTGTACG
CCCTTCTCCTCCAACGCCGTCCCTCCCCTTCCGCCCTCCCCCCCTCCCTT
TCCCGCCCTCCTCTTCTCCTTCCCTTTCGAAGAAAGCAAATCCGCCTGGA
GGGCACAATGGAGGGTGAGGGGAGGGAATGGAGGGAGGGAGGGAGGGAGG
GATGGTATTAAAGGAATGGGTGTCGGGGGAGATAGATGA

protein sequence of NO24G02020.1

>NO24G02020.1-protein ID=NO24G02020.1-protein|Name=NO24G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MQPSYVRPRRRPLLLLLRPPPLVSVLLIVVAIPAFSSSVLSGSSSTTSLL
PSPPSSYTFSPASLPLLLPAPVYSRQAQPLRASSAVIPSCWQPTHDGGRQ
KLRENSQAGRRHVLLRGWHGGGCGTTHGRSPHVASTRGFQIHHNNPRADP
PSFPPSFPPSCGGGREGLSRLLGKGGVSAAFVLGGVDATGPSLFQIESDG
TTQKVPFTAMGSGFAAAMSVLESQHRSSLSIQEGITLLHAAISSGIMNDL
GSGSRVDICVIQANGQVDYRRDVQLVEGPSLPPSISPSSSSSSASSSSSR
YASKEDVQEEEEEEEMKKEKKEEVEKKGASSHRSRGRPPLPSPPPPPPPP
PPPPPSLVPFLLPLLPFLLVIVLLLLLLLLLLILPRSLLTGTKKNHKTCT
PFSSNAVPPLPPSPPPFPALLFSFPFEESKSAWRAQWRVRGGNGGREGGR
DGIKGMGVGGDR*

mRNA from alignment at chr24:534165..536762-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G02020.1 ID=NO24G02020.1|Name=NO24G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp|location=Sequence derived from alignment at chr24:534165..536762- (Nannochloropsis oceanica)
ATGCAACCATCATACGTCAGACCAAGAAGAAGGCCCCTCCTGCTCCTCCT
CCGTCCTCCTCCTCTCGTTTCCGTGCTTCTTATCGTCGTCGCCATCCCAG
CTTTCTCCTCTTCCGTGCTCAGCGGTAGCAGTAGCACCACCAGCCTTCTG
CCATCCCCTCCTTCCTCCTACACCTTCTCCCCGGCTTCCCTCCCCCTCCT
CCTTCCTGCCCCAGTGTACTCAAGACAGGCACAACCATTGCGGGCGTCGT
CTGCGGTGATTCCATCGTGTTGGCAGCCGACACACGGTACGTCTGGCGAG
GGGAAGATGGGAAGGTTGGAACACACATGCTCATAACAGACACCCATGCC
TTCCTCACCGTCCCTCCCTCCTCTCTCTTCCTGTCTCCCTCCCTCCCTTT
AAGCTCTACCATGGGTCAGATGGTGGCCGACAAAAATTGCGAGAAAATTC
ACAAGCTGGGCGACGCCATGTATTGCTGCGGGGCTGGCACGGCGGTACGA
AGGAGGGAGGGAGGGAGGAGGACGAAAACATGGAGAATGTGTGAAATTAT
CTAAGGGGAAAATATAATTTACTCCTTTTTCCAATGAAACCAAATCTTCT
CCTTCCATTTCTCCCTCCCTAACCCTCCCTTTCCTTCCTTTTTCGTGCTC
TATTTCCTTTCCCTTCCTTCCCTTCCCCTCTCTCCGCCAGGCGGATGCGG
AACAACTCACGGCCGCAGTCCGCACGTGGCTTCGACTAGAGGCTTCCAAA
TCCATCACAACAATCCGCGAGCAGACCCTCCCTCCTTCCCGCCCTCGTTC
CCTCCCTCGTGTGGTGGCGGCCGCGAGGGCTTGTCCCGGCTGTTGGGGAA
GGGCGGAGTGTCAGCTGCCTTTGTATTGGGAGGGGTGGATGCTACCGGAC
CCTCCTTATTCCAGGTATATGGCCCTCCTTCTCTCCCTCCCTCCCTCCTT
CCCTTCCTCCTCTCTGTTTTGTAATGATCATCGATCCATCCCTGTCTTCT
TCCTTCTTACAGGATGTCGGTGTGTCGCTGCTATTACTGCTGCTGCCACC
ACCCCTACTATTTCTGCCACCATCTCTACAACTGCCACCTCTATCTCTGC
TGAAACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGA
TCGAGAGTGATGGCACGACCCAAAAAGTGCCTTTCACGGCCATGGGCAGT
GGCTTCGCCGCCGCCATGTCCGTACTGGAGTCACAGCACCGGCAAGGCCT
CCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTTCCTCCTTTCCTTC
CTCCCTCTTTCCCTTTTTTTCTTCCTTTCTTCCTAAGTCTCCTTCCTGCC
TTGCTTTTGTTCTCTCTCCCTCACTCTCTCCTTGCCCTTCTGCGGAACGT
ACGGTCTCCTCAACCCCTCCATCGTTCCCTTCCTCCCTCCCTCCCTCCCT
CCCTCAGGTCCTCCCTAAGCATCCAGGAAGGCATCACGCTCTTGCACGCC
GCCATCAGCAGTGGGATTATGAACGACCTTGGGAGTGGCAGCCGCGTGGA
TATCTGTGTGATTCAGGCAAATGGGCAGGTAGGTAGGGGGAGGGAGGGAG
GGAGGGAGGGAGGCATGGGAACAGAGCTGGCGTTCTACATTTTAAAGAAT
AGGTAGGAAGGGAGGGAGGTAGGTAGGGAGGGAGGGAGGTAGGGAGGGAG
GCATGGGAACAGAGTTGATGTTCAACATTTTAAATAATAGGTAGGAAGGG
AGGGAGGTAGGGAGGGAGGGTGAGAAGGACGAAAGGATGGTAAATCGCCT
TAACTCTTGAAAAATAGAACAGAGTGACACTCTCGTTTTTCCTCTTTTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTGTCTTATTCATCTC
ATGCACGCATATCCTCTTATGTAATTAAATCTTATCCTCTTTAATTTATT
AATCTGTTTTTATAATTATCTAATTTAACACAATTGATTAAATTTGTGTG
TGTCTAGGTGGATTACAGGCGCGATGTCCAGCTTGTTGAAGGGCCCTCCC
TCCCGCCCTCAATCTCGCCCTCCTCCTCCTCCTCTTCCGCCTCTTCTTCC
TCGTCAAGATACGCCTCAAAAGAAGATGTTCAGGAGGAGGAGGAAGAAGA
GGAGATGAAGAAGGAGAAGAAGGAAGAGGTAGAGAAGAAGGGGGCATCTT
CTCACCGCTCGCGTGGACGGCCTCCTCTTCCTTCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTTCCCTCGTCCCATTTCTCCTTCCACT
CCTTCCCTTTCTTCTCGTCATCGTCCTTCTCCTCCTCCTCCTCCTCCTCC
TTCTCATTCTCCCTCGGAGTCTCTTGACAGGAACGAAAAAGAACCACAAG
ACTTGTACGCCCTTCTCCTCCAACGCCGTCCCTCCCCTTCCGCCCTCCCC
CCCTCCCTTTCCCGCCCTCCTCTTCTCCTTCCCTTTCGAAGAAAGCAAAT
CCGCCTGGAGGGCACAATGGAGGGTGAGGGGAGGGAATGGAGGGAGGGAG
GGAGGGAGGGATGGTATTAAAGGAATGGGTGTCGGGGGAGATAGATGA

Coding sequence (CDS) from alignment at chr24:534165..536762-

>NO24G02020.1 ID=NO24G02020.1|Name=NO24G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr24:534165..536762- (Nannochloropsis oceanica)
ATGCAACCATCATACGTCAGACCAAGAAGAAGGCCCCTCCTGCTCCTCCT
CCGTCCTCCTCCTCTCGTTTCCGTGCTTCTTATCGTCGTCGCCATCCCAG
CTTTCTCCTCTTCCGTGCTCAGCGGTAGCAGTAGCACCACCAGCCTTCTG
CCATCCCCTCCTTCCTCCTACACCTTCTCCCCGGCTTCCCTCCCCCTCCT
CCTTCCTGCCCCAGTGTACTCAAGACAGGCACAACCATTGCGGGCGTCGT
CTGCGGTGATTCCATCGTGTTGGCAGCCGACACACGATGGTGGCCGACAA
AAATTGCGAGAAAATTCACAAGCTGGGCGACGCCATGTATTGCTGCGGGG
CTGGCACGGCGGCGGATGCGGAACAACTCACGGCCGCAGTCCGCACGTGG
CTTCGACTAGAGGCTTCCAAATCCATCACAACAATCCGCGAGCAGACCCT
CCCTCCTTCCCGCCCTCGTTCCCTCCCTCGTGTGGTGGCGGCCGCGAGGG
CTTGTCCCGGCTGTTGGGGAAGGGCGGAGTGTCAGCTGCCTTTGTATTGG
GAGGGGTGGATGCTACCGGACCCTCCTTATTCCAGATCGAGAGTGATGGC
ACGACCCAAAAAGTGCCTTTCACGGCCATGGGCAGTGGCTTCGCCGCCGC
CATGTCCGTACTGGAGTCACAGCACCGGTCCTCCCTAAGCATCCAGGAAG
GCATCACGCTCTTGCACGCCGCCATCAGCAGTGGGATTATGAACGACCTT
GGGAGTGGCAGCCGCGTGGATATCTGTGTGATTCAGGCAAATGGGCAGGT
GGATTACAGGCGCGATGTCCAGCTTGTTGAAGGGCCCTCCCTCCCGCCCT
CAATCTCGCCCTCCTCCTCCTCCTCTTCCGCCTCTTCTTCCTCGTCAAGA
TACGCCTCAAAAGAAGATGTTCAGGAGGAGGAGGAAGAAGAGGAGATGAA
GAAGGAGAAGAAGGAAGAGGTAGAGAAGAAGGGGGCATCTTCTCACCGCT
CGCGTGGACGGCCTCCTCTTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTTCCCTCGTCCCATTTCTCCTTCCACTCCTTCCCTT
TCTTCTCGTCATCGTCCTTCTCCTCCTCCTCCTCCTCCTCCTTCTCATTC
TCCCTCGGAGTCTCTTGACAGGAACGAAAAAGAACCACAAGACTTGTACG
CCCTTCTCCTCCAACGCCGTCCCTCCCCTTCCGCCCTCCCCCCCTCCCTT
TCCCGCCCTCCTCTTCTCCTTCCCTTTCGAAGAAAGCAAATCCGCCTGGA
GGGCACAATGGAGGGTGAGGGGAGGGAATGGAGGGAGGGAGGGAGGGAGG
GATGGTATTAAAGGAATGGGTGTCGGGGGAGATAGATGA

Synonyms

Publications