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Properties
Property Name | Value |
Description | Zn(2)-C6 fungal-type DNA-binding domain protein |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr24 | genome | chr24:394053..396901 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
GO:0006357 | regulation of transcription by RNA polymerase II |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO:0008270 | zinc ion binding |
GO:0008270 | zinc ion binding |
GO:0003677 | DNA binding |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: INTERPRO
Term | Definition |
IPR036864 | Zn2-C6_fun-type_DNA-bd_sf |
IPR001138 | Zn2-C6_fun-type_DNA-bd |
Homology
BLAST of NO24G01490 vs. NCBI_GenBank
Match: EWM24351.1 (Zn(2)-C6 fungal-type DNA-binding domain protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 226.5 bits (576), Expect = 3.200e-55 Identity = 178/466 (38.20%), Postives = 213/466 (45.71%), Query Frame = 0
Query: 307 EMGGDARKARFLLAACAGGEGGREK-ERGESVG---GRLRRALKAF-------------AEPPPVYPSLPPSFL-PPHLMIVVKDPSECLRLAKRAVGSGLRVSVARHPCHVLSEVVEEDEVFFQGMVLEADFSVVSGLEAAMKFRTLPSP----------------------------GVXXXXXXXXXXXXXXXXXXMMVMVVNGSPHANYSGFEAHALAAGVDYVAQDFEELSFENLKKQLERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLPIARLPAFTWTGAMPXXXXXXXXXXXXXXXXXXXXXXXXHLGSGKG------GTAVWNDASVSQGQSFTFLPPT-LSKAHSCPLATSPALVSPAAAAAFPALGQSSSSXVCXXSSTGE--KETKRVKRACVHCHSKKLACSLHRPCDRCYDLQQPCVENVRKAR 718
E+G D R+ARFLLA +G E ERG G R+R AL+A+ A P+ SL PS L PPHL+IVV P L L +RA+ +GLRVSVAR+ HVLSEV+E E +F G+VLE D ++SGLEAAMKFR LPSP G MMVMVVNGS HANYSGFEAHAL+AGVDYVAQ+FEELSFENLKKQLERR GLP+ARLP+FTWTGA+P G G + W D SV +G S + + + AH X X + E ++ KRV+RAC++CH KKL+CS HRPCDRCY L+Q CVE V K R
Sbjct: 208 ELGNDTRRARFLLAMSGERDGEEEAVERGGDGGKALSRIRDALRAYVAGGSPAASLSHTASHHPL-ASLGPSLLPPPHLVIVVDHPPTALALTRRALEAGLRVSVARNALHVLSEVIERGETYFHGLVLEVDSPIMSGLEAAMKFRGLPSPLVVLGEGERGAEQGGPAAQTAGAGQGREGRRRGLEGRGGSMLSATAKLMMVMVVNGSRHANYSGFEAHALSAGVDYVAQEFEELSFENLKKQLERRCDVGMREAAGRALEDVAQGGEGRAGGEEGGRRGRGKAGKPSSGLRQ-------GLPLARLPSFTWTGALPLSRGESASLSRSSSETIRSGRPAWSAGETSAMDSTIMGLSPWEDLSVPRGGSLLPMAHSHTAAAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAARELRRKDKRVRRACMYCHGKKLSCSFHRPCDRCYALKQNCVEYVPKQR 665
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G01490 ID=NO24G01490|Name=NO24G01490|organism=Nannochloropsis oceanica|type=gene|length=2849bp ATGTATCACCCCCTCCACCATTCGGGAGAAGGTGACGGCGGGGGCGAGGA CGAAGAGGGCGACCAGAACCCGACATTCTCATCCCTCTACAATGGGGAGG AGGAGGAGGAGGAGGAGGAGAAGCAGAAAGAGCAGCTCGCCCATCACGCA CAACAGCACCAACATCATCTTTCGCCACGGAATTTTAATGAAGCCATCGT ACCAGCGAATGCTGCTGCTTCCTTCTTTCCCACTCCTCCTCTTTTTTACC CGGCGCCATCGGGAGGAGGAGGAGATGAAGCCGAGGGTTTGGAGAGTCGG CAACAGCAGCAGGAGCAGCGCTTCCATCACCAACATGAAGGCATGCATGT GTCTTCGACTTCCGTGTCAACGTCAGCGAACAAAGCCTTAAATCCTCCCA CCACAACTACTTCTTGTGACCACCATACTTTAACACCAAGCAGCAGTAGC AATAGCAGCAGCAATAGCAGCGGCAGCAGCAGTGTCCGAAGTACCACCAG TCGCAATCTAAACGTACCTGGTGCGGTGATTGTATTGGGCCAAGCATCTT TTACCCATGCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCACTCCCA CCAAACGCCACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCGAGAGGAGGAATCACTACTTCGGGATCCCCTTATTCCTCCCCCT CTTCCCCGTCCTCCACCTCAATGGTGCTGAGAGAATGCTTTGGCTTCTCT GCGGGTAGAATCAAGGCCGGCGCTTCTCTCTTAGGGAAATTAAGTGCTAT TTTGGAAGAAGGAGGAAGGGTAGAAGCCCGTCCTGCAGCAGGAGTGGAGG GAGGGAGGGAGGAAGGGAAGGAGGAAGATTTGGAAGAGGCAGCAGCGTTG GCGAGCGTTGTGATGAGTGAGATGGGAGGAGATGCGCGAAAGGCTCGTTT TTTGCTCGCGGCCTGTGCAGGAGGGGAGGGAGGGAGGGAGAAAGAGAGAG GTGAAAGCGTGGGCGGTCGACTTCGCCGGGCCCTCAAAGCTTTTGCTGAG CCCCCTCCAGTCTACCCCTCCCTCCCTCCCTCCTTCCTTCCACCCCACCT GATGATTGTGGTGAAAGACCCTTCCGAGTGTTTGCGCCTGGCCAAGCGAG CAGTAGGATCAGGGCTGAGGGTGAGTGTAGCGCGCCACCCTTGCCATGTT CTGAGTGAGGTGGTGGAGGAGGATGAAGTTTTTTTTCAGGGGATGGTCCT AGAAGCCGACTTTTCAGTGGTGTCCGGCCTGGAGGCAGCGATGAAGTTCC GGACATTGCCTTCCCCAGGAGTGGGGGAAGGCAGGGGGAAGGAAGGGGGA CAGGCACAGTCAGCGACGGCGAACCTAATGATGGTGATGGTGGTGAATGG AAGTCCGCATGCCAATTATTCAGgtgcgtctgcctccctctctccctccc tccctccctccttcccttcctcccttcccccgtcatttcaaaagtaaacc atccactcaacctccgtctgtctatctgtgcttatttctcttcttccttc cttctctccttctctcctacctttccttcctccttccttctcttcctccc tccttcctttccctcctcccttctctccctccccgcctttccagGCTTCG AGGCCCATGCCCTGGCTGCGGGGGTGGACTATGTGGCTCAGGATTTTGAA GAACTATCGTTTGAAAATTTAAAAAAACAACTGGAAAGAAGAGCAGAAGT AGGGGTACGAGCAGCAACAACAGCCGCAGCAGAAACTGGAGAAGGAGAAG GAGAAGGAGGATTGAGAAGTATGAAGGGGTTGATGGGTGGAGGAGGAGAA GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGGAGGTGTGGGTGAGGG AGGACTGCCGATAGCGCGATTGCCGGCTTTTACGTGGACTGGAGCCATGC CTGCCTCGAAGCCGTCTCCCAAGAGATCTGGGGAGGGAGGGAAGGAGGGA GGGAGGGAGGGAGGGAGGGTGGGGCATCTGGGATCGGGGAAGGGAGGGAC GGCCGTGTGGAATGATGCGAGCGTTTCCCAAGGCCAATCGTTCACTTTCC TCCCCCCCACCTTGTCTAAGGCTCATTCTTGTCCCTTAGCGACTAGCCCG GCACTAGTCTCTCCTGCTGCGGCTGCTGCGTTCCCTGCTCTTGGTCAGAG CAGCAGCAGCAGTGTATGCAGCAGCAGCTCCACGGGGGAGAAGGAGACCA AGAGGGTCAAACGTGCGTGTGTGCACTGCCACTCGAAAAAGCTGGCGTGT TCGTTGCACAGGCCGTGCGATCGATGCTATGACCTGCAGCAGCCCTGTGT GGAAAATGTCCGCAAGGCAAGGTCGTTCTCGTCGTCGTCATCAGGGTCAG GCACGCCTAGAGTGGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCGGCAGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGCAGAGGAAGGAGAAGGAGAAAGAGAAGGAGAAG AAGGAGAAGGAGAAGAAGGAGAAGGAGAAGAAGGAGAAGAAGGAGGACGA CGAACAAGAAAAGGGGAATTGACAGTAGTAGCGCGAGATGGAGCAGCAGC AGCGGCAGCAGGAGGGTCAGAAGCAGCAGCAACATCACTGGCGGAAGGAG GAGCAAAGGGGGGGGGAGAGGAGGAGGAGGGGTTGGGCTGGGGGGGGTTG GGTGGAGGGATGGCATATGGAGGGGGAGTTGTGTATCTTGGGGCGAAGAG CTCACCCTTCTCTTTTGCTCCTACAGGTGGTAGTAGTGGGGGGATGTGA back to topprotein sequence of NO24G01490.1 >NO24G01490.1-protein ID=NO24G01490.1-protein|Name=NO24G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=876bp MYHPLHHSGEGDGGGEDEEGDQNPTFSSLYNGEEEEEEEEKQKEQLAHHA QQHQHHLSPRNFNEAIVPANAAASFFPTPPLFYPAPSGGGGDEAEGLESR QQQQEQRFHHQHEGMHVSSTSVSTSANKALNPPTTTTSCDHHTLTPSSSS NSSSNSSGSSSVRSTTSRNLNVPGAVIVLGQASFTHAPPPPPPPPPPALP PNATSAAAAAAAAAAAAAARGGITTSGSPYSSPSSPSSTSMVLRECFGFS AGRIKAGASLLGKLSAILEEGGRVEARPAAGVEGGREEGKEEDLEEAAAL ASVVMSEMGGDARKARFLLAACAGGEGGREKERGESVGGRLRRALKAFAE PPPVYPSLPPSFLPPHLMIVVKDPSECLRLAKRAVGSGLRVSVARHPCHV LSEVVEEDEVFFQGMVLEADFSVVSGLEAAMKFRTLPSPGVGEGRGKEGG QAQSATANLMMVMVVNGSPHANYSGFEAHALAAGVDYVAQDFEELSFENL KKQLERRAEVGVRAATTAAAETGEGEGEGGLRSMKGLMGGGGEGGREGGR EGGSGGVGEGGLPIARLPAFTWTGAMPASKPSPKRSGEGGKEGGREGGRV GHLGSGKGGTAVWNDASVSQGQSFTFLPPTLSKAHSCPLATSPALVSPAA AAAFPALGQSSSSSVCSSSSTGEKETKRVKRACVHCHSKKLACSLHRPCD RCYDLQQPCVENVRKARSFSSSSSGSGTPRVAAAAAAAAAAAAAAARGGG GGGGGGGGGGGGGGGAEEGEGEREGEEGEGEEGEGEEGEEGGRRTRKGEL TVVARDGAAAAAAGGSEAAATSLAEGGAKGGGEEEEGLGWGGLGGGMAYG GGVVYLGAKSSPFSFAPTGGSSGGM* back to top
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