NO24G01490, NO24G01490 (gene) Nannochloropsis oceanica

Overview
NameNO24G01490
Unique NameNO24G01490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2849
Alignment locationchr24:394053..396901 -

Link to JBrowse

Properties
Property NameValue
DescriptionZn(2)-C6 fungal-type DNA-binding domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:394053..396901 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006357regulation of transcription by RNA polymerase II
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0008270zinc ion binding
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO24G01490 vs. NCBI_GenBank
Match: EWM24351.1 (Zn(2)-C6 fungal-type DNA-binding domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 226.5 bits (576), Expect = 3.200e-55
Identity = 178/466 (38.20%), Postives = 213/466 (45.71%), Query Frame = 0 
Query:  307 EMGGDARKARFLLAACAGGEGGREK-ERGESVG---GRLRRALKAF-------------AEPPPVYPSLPPSFL-PPHLMIVVKDPSECLRLAKRAVGSGLRVSVARHPCHVLSEVVEEDEVFFQGMVLEADFSVVSGLEAAMKFRTLPSP----------------------------GVXXXXXXXXXXXXXXXXXXMMVMVVNGSPHANYSGFEAHALAAGVDYVAQDFEELSFENLKKQLERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLPIARLPAFTWTGAMPXXXXXXXXXXXXXXXXXXXXXXXXHLGSGKG------GTAVWNDASVSQGQSFTFLPPT-LSKAHSCPLATSPALVSPAAAAAFPALGQSSSSXVCXXSSTGE--KETKRVKRACVHCHSKKLACSLHRPCDRCYDLQQPCVENVRKAR 718
            E+G D R+ARFLLA     +G  E  ERG   G    R+R AL+A+             A   P+  SL PS L PPHL+IVV  P   L L +RA+ +GLRVSVAR+  HVLSEV+E  E +F G+VLE D  ++SGLEAAMKFR LPSP                            G                   MMVMVVNGS HANYSGFEAHAL+AGVDYVAQ+FEELSFENLKKQLERR                                                     GLP+ARLP+FTWTGA+P                          G          G + W D SV +G S   +  +  + AH                            X  X  +  E  ++ KRV+RAC++CH KKL+CS HRPCDRCY L+Q CVE V K R
Sbjct:  208 ELGNDTRRARFLLAMSGERDGEEEAVERGGDGGKALSRIRDALRAYVAGGSPAASLSHTASHHPL-ASLGPSLLPPPHLVIVVDHPPTALALTRRALEAGLRVSVARNALHVLSEVIERGETYFHGLVLEVDSPIMSGLEAAMKFRGLPSPLVVLGEGERGAEQGGPAAQTAGAGQGREGRRRGLEGRGGSMLSATAKLMMVMVVNGSRHANYSGFEAHALSAGVDYVAQEFEELSFENLKKQLERRCDVGMREAAGRALEDVAQGGEGRAGGEEGGRRGRGKAGKPSSGLRQ-------GLPLARLPSFTWTGALPLSRGESASLSRSSSETIRSGRPAWSAGETSAMDSTIMGLSPWEDLSVPRGGSLLPMAHSHTAAAHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAARELRRKDKRVRRACMYCHGKKLSCSFHRPCDRCYALKQNCVEYVPKQR 665
The following BLAST results are available for this feature:
BLAST of NO24G01490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200240026002800Expect = 3.20e-55 / Id = 38.20SequenceEWM24351.1
Match NameE-valueIdentityDescription
EWM24351.13.200e-5538.20Zn(2)-C6 fungal-type DNA-binding domain protein, p... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002844NSK002844Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01490.1NO24G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|132568gene_7372Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100163g1gene6124Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01490.1NO24G01490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01490 ID=NO24G01490|Name=NO24G01490|organism=Nannochloropsis oceanica|type=gene|length=2849bp
ATGTATCACCCCCTCCACCATTCGGGAGAAGGTGACGGCGGGGGCGAGGA
CGAAGAGGGCGACCAGAACCCGACATTCTCATCCCTCTACAATGGGGAGG
AGGAGGAGGAGGAGGAGGAGAAGCAGAAAGAGCAGCTCGCCCATCACGCA
CAACAGCACCAACATCATCTTTCGCCACGGAATTTTAATGAAGCCATCGT
ACCAGCGAATGCTGCTGCTTCCTTCTTTCCCACTCCTCCTCTTTTTTACC
CGGCGCCATCGGGAGGAGGAGGAGATGAAGCCGAGGGTTTGGAGAGTCGG
CAACAGCAGCAGGAGCAGCGCTTCCATCACCAACATGAAGGCATGCATGT
GTCTTCGACTTCCGTGTCAACGTCAGCGAACAAAGCCTTAAATCCTCCCA
CCACAACTACTTCTTGTGACCACCATACTTTAACACCAAGCAGCAGTAGC
AATAGCAGCAGCAATAGCAGCGGCAGCAGCAGTGTCCGAAGTACCACCAG
TCGCAATCTAAACGTACCTGGTGCGGTGATTGTATTGGGCCAAGCATCTT
TTACCCATGCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCACTCCCA
CCAAACGCCACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGAGAGGAGGAATCACTACTTCGGGATCCCCTTATTCCTCCCCCT
CTTCCCCGTCCTCCACCTCAATGGTGCTGAGAGAATGCTTTGGCTTCTCT
GCGGGTAGAATCAAGGCCGGCGCTTCTCTCTTAGGGAAATTAAGTGCTAT
TTTGGAAGAAGGAGGAAGGGTAGAAGCCCGTCCTGCAGCAGGAGTGGAGG
GAGGGAGGGAGGAAGGGAAGGAGGAAGATTTGGAAGAGGCAGCAGCGTTG
GCGAGCGTTGTGATGAGTGAGATGGGAGGAGATGCGCGAAAGGCTCGTTT
TTTGCTCGCGGCCTGTGCAGGAGGGGAGGGAGGGAGGGAGAAAGAGAGAG
GTGAAAGCGTGGGCGGTCGACTTCGCCGGGCCCTCAAAGCTTTTGCTGAG
CCCCCTCCAGTCTACCCCTCCCTCCCTCCCTCCTTCCTTCCACCCCACCT
GATGATTGTGGTGAAAGACCCTTCCGAGTGTTTGCGCCTGGCCAAGCGAG
CAGTAGGATCAGGGCTGAGGGTGAGTGTAGCGCGCCACCCTTGCCATGTT
CTGAGTGAGGTGGTGGAGGAGGATGAAGTTTTTTTTCAGGGGATGGTCCT
AGAAGCCGACTTTTCAGTGGTGTCCGGCCTGGAGGCAGCGATGAAGTTCC
GGACATTGCCTTCCCCAGGAGTGGGGGAAGGCAGGGGGAAGGAAGGGGGA
CAGGCACAGTCAGCGACGGCGAACCTAATGATGGTGATGGTGGTGAATGG
AAGTCCGCATGCCAATTATTCAGgtgcgtctgcctccctctctccctccc
tccctccctccttcccttcctcccttcccccgtcatttcaaaagtaaacc
atccactcaacctccgtctgtctatctgtgcttatttctcttcttccttc
cttctctccttctctcctacctttccttcctccttccttctcttcctccc
tccttcctttccctcctcccttctctccctccccgcctttccagGCTTCG
AGGCCCATGCCCTGGCTGCGGGGGTGGACTATGTGGCTCAGGATTTTGAA
GAACTATCGTTTGAAAATTTAAAAAAACAACTGGAAAGAAGAGCAGAAGT
AGGGGTACGAGCAGCAACAACAGCCGCAGCAGAAACTGGAGAAGGAGAAG
GAGAAGGAGGATTGAGAAGTATGAAGGGGTTGATGGGTGGAGGAGGAGAA
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGGAGGTGTGGGTGAGGG
AGGACTGCCGATAGCGCGATTGCCGGCTTTTACGTGGACTGGAGCCATGC
CTGCCTCGAAGCCGTCTCCCAAGAGATCTGGGGAGGGAGGGAAGGAGGGA
GGGAGGGAGGGAGGGAGGGTGGGGCATCTGGGATCGGGGAAGGGAGGGAC
GGCCGTGTGGAATGATGCGAGCGTTTCCCAAGGCCAATCGTTCACTTTCC
TCCCCCCCACCTTGTCTAAGGCTCATTCTTGTCCCTTAGCGACTAGCCCG
GCACTAGTCTCTCCTGCTGCGGCTGCTGCGTTCCCTGCTCTTGGTCAGAG
CAGCAGCAGCAGTGTATGCAGCAGCAGCTCCACGGGGGAGAAGGAGACCA
AGAGGGTCAAACGTGCGTGTGTGCACTGCCACTCGAAAAAGCTGGCGTGT
TCGTTGCACAGGCCGTGCGATCGATGCTATGACCTGCAGCAGCCCTGTGT
GGAAAATGTCCGCAAGGCAAGGTCGTTCTCGTCGTCGTCATCAGGGTCAG
GCACGCCTAGAGTGGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGCAGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGCAGAGGAAGGAGAAGGAGAAAGAGAAGGAGAAG
AAGGAGAAGGAGAAGAAGGAGAAGGAGAAGAAGGAGAAGAAGGAGGACGA
CGAACAAGAAAAGGGGAATTGACAGTAGTAGCGCGAGATGGAGCAGCAGC
AGCGGCAGCAGGAGGGTCAGAAGCAGCAGCAACATCACTGGCGGAAGGAG
GAGCAAAGGGGGGGGGAGAGGAGGAGGAGGGGTTGGGCTGGGGGGGGTTG
GGTGGAGGGATGGCATATGGAGGGGGAGTTGTGTATCTTGGGGCGAAGAG
CTCACCCTTCTCTTTTGCTCCTACAGGTGGTAGTAGTGGGGGGATGTGA
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protein sequence of NO24G01490.1

>NO24G01490.1-protein ID=NO24G01490.1-protein|Name=NO24G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=876bp
MYHPLHHSGEGDGGGEDEEGDQNPTFSSLYNGEEEEEEEEKQKEQLAHHA
QQHQHHLSPRNFNEAIVPANAAASFFPTPPLFYPAPSGGGGDEAEGLESR
QQQQEQRFHHQHEGMHVSSTSVSTSANKALNPPTTTTSCDHHTLTPSSSS
NSSSNSSGSSSVRSTTSRNLNVPGAVIVLGQASFTHAPPPPPPPPPPALP
PNATSAAAAAAAAAAAAAARGGITTSGSPYSSPSSPSSTSMVLRECFGFS
AGRIKAGASLLGKLSAILEEGGRVEARPAAGVEGGREEGKEEDLEEAAAL
ASVVMSEMGGDARKARFLLAACAGGEGGREKERGESVGGRLRRALKAFAE
PPPVYPSLPPSFLPPHLMIVVKDPSECLRLAKRAVGSGLRVSVARHPCHV
LSEVVEEDEVFFQGMVLEADFSVVSGLEAAMKFRTLPSPGVGEGRGKEGG
QAQSATANLMMVMVVNGSPHANYSGFEAHALAAGVDYVAQDFEELSFENL
KKQLERRAEVGVRAATTAAAETGEGEGEGGLRSMKGLMGGGGEGGREGGR
EGGSGGVGEGGLPIARLPAFTWTGAMPASKPSPKRSGEGGKEGGREGGRV
GHLGSGKGGTAVWNDASVSQGQSFTFLPPTLSKAHSCPLATSPALVSPAA
AAAFPALGQSSSSSVCSSSSTGEKETKRVKRACVHCHSKKLACSLHRPCD
RCYDLQQPCVENVRKARSFSSSSSGSGTPRVAAAAAAAAAAAAAAARGGG
GGGGGGGGGGGGGGGAEEGEGEREGEEGEGEEGEGEEGEEGGRRTRKGEL
TVVARDGAAAAAAGGSEAAATSLAEGGAKGGGEEEEGLGWGGLGGGMAYG
GGVVYLGAKSSPFSFAPTGGSSGGM*
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Synonyms
Publications