Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr24 genome chr24:394053..396901 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01490.1 vs.
Match: EWM24351.1 (Zn(2)-C6 fungal-type DNA-binding domain protein, partial [Nannochloropsis gaditana])
HSP 1 Score: 275.8 bits (704), Expect = 4.700e-70
Identity = 241/566 (42.58%), Postives = 295/566 (52.12%), Query Frame = 0
Query: 250 SAGRIKAGASLLGKLSAIL---EEGGRVEARPAAGVEGGREEGKEEDLEEAAALASVVMSEMGGDARKARFLLAACAGGEGGREK-ERGESVG---GRLRRALKAF-------------AEPPPVYPSLPPSFL-PPHLMIVVKDPSECLRLAKRAVGSGLRVSVARHPCHVLSEVVEEDEVFFQGMVLEADFSVVSGLEAAMKFRTLPSPGV-------------------GEGRGKE---------GGQAQSATANLMMVMVVNGSPHANYSGFEAHALAAGVDYVAQDFEELSFENLKKQLERRAEVGVRAATTAAAETGEGEGEGGLRSMKGLMGGGGEGGREGGREGGSGGVG-EGGLPIARLPAFTWTGAMPASKPSPKRSGEGGKEGGREG------GRVGHLGSGKGGTAVWNDASVSQGQSFTFLPPTLSKAHSCPLATSPALVS----------PAAAAAFPALGQSSSSSVCSSSSTGEKETKRVKRACVHCHSKKLACSLHRPCDRCYDLQQPCVENVRKARSFSSSSSGSGTPRVAAAAAAAAAAAAAAARGG 750
S ++ A+LL +L+ IL +E G E R A + G A L + E+G D R+ARFLLA +G E ERG G R+R AL+A+ A P+ SL PS L PPHL+IVV P L L +RA+ +GLRVSVAR+ HVLSEV+E E +F G+VLE D ++SGLEAAMKFR LPSP V G G+G+E GG SATA LMMVMVVNGS HANYSGFEAHAL+AGVDYVAQ+FEELSFENLKKQLERR +VG+R A A E GEG GG EGGR G + G G GLP+ARLP+FTWTGA+P S+ E R G G + S G + W D SV +G S L AHS A AL + P GQ+S ++ K+ KRV+RAC++CH KKL+CS HRPCDRCY L+Q CVE V K R+ S+ + P AA A + A + G
Sbjct: 159 SGKKLLREAALLTRLAEILLPKQERGSEEGRGWAEGDAG-----------AVGLTEWLAGELGNDTRRARFLLAMSGERDGEEEAVERGGDGGKALSRIRDALRAYVAGGSPAASLSHTASHHPL-ASLGPSLLPPPHLVIVVDHPPTALALTRRALEAGLRVSVARNALHVLSEVIERGETYFHGLVLEVDSPIMSGLEAAMKFRGLPSPLVVLGEGERGAEQGGPAAQTAGAGQGREGRRRGLEGRGGSMLSATAKLMMVMVVNGSRHANYSGFEAHALSAGVDYVAQEFEELSFENLKKQLERRCDVGMREAAGRALEDVAQGGEG--------RAGGEEGGRRGRGKAGKPSSGLRQGLPLARLPSFTWTGALPLSRGESASLSRSSSETIRSGRPAWSAGETSAMDSTIMGLSPWEDLSVPRGGSL------LPMAHSHTAAAHVALAAGADGGGGEGGPDGGGGGYGPGQASGGGEVAARELRRKD-KRVRRACMYCHGKKLSCSFHRPCDRCYALKQNCVEYVPKQRTLDSTGNVYCPPAPGPAARAKSEDGWGAEQDG 697
The following BLAST results are available for this feature:
BLAST of NO24G01490.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 4.70e-70 / Id = 42.58 Sequence EWM24351.1
Match Name E-value Identity Description
EWM24351.1 4.700e-70 42.58 Zn(2)-C6 fungal-type DNA-binding domain protein, p... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO24G01490.1 ID=NO24G01490.1|Name=NO24G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2628bp back to top protein sequence of NO24G01490.1
>NO24G01490.1-protein ID=NO24G01490.1-protein|Name=NO24G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=876bp back to top mRNA from alignment at chr24:394053..396901-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01490.1 ID=NO24G01490.1|Name=NO24G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2849bp|location=Sequence derived from alignment at chr24:394053..396901- (Nannochloropsis oceanica)ATGTATCACCCCCTCCACCATTCGGGAGAAGGTGACGGCGGGGGCGAGGA
CGAAGAGGGCGACCAGAACCCGACATTCTCATCCCTCTACAATGGGGAGG
AGGAGGAGGAGGAGGAGGAGAAGCAGAAAGAGCAGCTCGCCCATCACGCA
CAACAGCACCAACATCATCTTTCGCCACGGAATTTTAATGAAGCCATCGT
ACCAGCGAATGCTGCTGCTTCCTTCTTTCCCACTCCTCCTCTTTTTTACC
CGGCGCCATCGGGAGGAGGAGGAGATGAAGCCGAGGGTTTGGAGAGTCGG
CAACAGCAGCAGGAGCAGCGCTTCCATCACCAACATGAAGGCATGCATGT
GTCTTCGACTTCCGTGTCAACGTCAGCGAACAAAGCCTTAAATCCTCCCA
CCACAACTACTTCTTGTGACCACCATACTTTAACACCAAGCAGCAGTAGC
AATAGCAGCAGCAATAGCAGCGGCAGCAGCAGTGTCCGAAGTACCACCAG
TCGCAATCTAAACGTACCTGGTGCGGTGATTGTATTGGGCCAAGCATCTT
TTACCCATGCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCACTCCCA
CCAAACGCCACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGAGAGGAGGAATCACTACTTCGGGATCCCCTTATTCCTCCCCCT
CTTCCCCGTCCTCCACCTCAATGGTGCTGAGAGAATGCTTTGGCTTCTCT
GCGGGTAGAATCAAGGCCGGCGCTTCTCTCTTAGGGAAATTAAGTGCTAT
TTTGGAAGAAGGAGGAAGGGTAGAAGCCCGTCCTGCAGCAGGAGTGGAGG
GAGGGAGGGAGGAAGGGAAGGAGGAAGATTTGGAAGAGGCAGCAGCGTTG
GCGAGCGTTGTGATGAGTGAGATGGGAGGAGATGCGCGAAAGGCTCGTTT
TTTGCTCGCGGCCTGTGCAGGAGGGGAGGGAGGGAGGGAGAAAGAGAGAG
GTGAAAGCGTGGGCGGTCGACTTCGCCGGGCCCTCAAAGCTTTTGCTGAG
CCCCCTCCAGTCTACCCCTCCCTCCCTCCCTCCTTCCTTCCACCCCACCT
GATGATTGTGGTGAAAGACCCTTCCGAGTGTTTGCGCCTGGCCAAGCGAG
CAGTAGGATCAGGGCTGAGGGTGAGTGTAGCGCGCCACCCTTGCCATGTT
CTGAGTGAGGTGGTGGAGGAGGATGAAGTTTTTTTTCAGGGGATGGTCCT
AGAAGCCGACTTTTCAGTGGTGTCCGGCCTGGAGGCAGCGATGAAGTTCC
GGACATTGCCTTCCCCAGGAGTGGGGGAAGGCAGGGGGAAGGAAGGGGGA
CAGGCACAGTCAGCGACGGCGAACCTAATGATGGTGATGGTGGTGAATGG
AAGTCCGCATGCCAATTATTCAG GTGCGTCTGCCTCCCTCTCTCCCTCCC
TCCCTCCCTCCTTCCCTTCCTCCCTTCCCCCGTCATTTCAAAAGTAAACC
ATCCACTCAACCTCCGTCTGTCTATCTGTGCTTATTTCTCTTCTTCCTTC
CTTCTCTCCTTCTCTCCTACCTTTCCTTCCTCCTTCCTTCTCTTCCTCCC
TCCTTCCTTTCCCTCCTCCCTTCTCTCCCTCCCCGCCTTTCCAGGCTTCG
AGGCCCATGCCCTGGCTGCGGGGGTGGACTATGTGGCTCAGGATTTTGAA
GAACTATCGTTTGAAAATTTAAAAAAACAACTGGAAAGAAGAGCAGAAGT
AGGGGTACGAGCAGCAACAACAGCCGCAGCAGAAACTGGAGAAGGAGAAG
GAGAAGGAGGATTGAGAAGTATGAAGGGGTTGATGGGTGGAGGAGGAGAA
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGGAGGTGTGGGTGAGGG
AGGACTGCCGATAGCGCGATTGCCGGCTTTTACGTGGACTGGAGCCATGC
CTGCCTCGAAGCCGTCTCCCAAGAGATCTGGGGAGGGAGGGAAGGAGGGA
GGGAGGGAGGGAGGGAGGGTGGGGCATCTGGGATCGGGGAAGGGAGGGAC
GGCCGTGTGGAATGATGCGAGCGTTTCCCAAGGCCAATCGTTCACTTTCC
TCCCCCCCACCTTGTCTAAGGCTCATTCTTGTCCCTTAGCGACTAGCCCG
GCACTAGTCTCTCCTGCTGCGGCTGCTGCGTTCCCTGCTCTTGGTCAGAG
CAGCAGCAGCAGTGTATGCAGCAGCAGCTCCACGGGGGAGAAGGAGACCA
AGAGGGTCAAACGTGCGTGTGTGCACTGCCACTCGAAAAAGCTGGCGTGT
TCGTTGCACAGGCCGTGCGATCGATGCTATGACCTGCAGCAGCCCTGTGT
GGAAAATGTCCGCAAGGCAAGGTCGTTCTCGTCGTCGTCATCAGGGTCAG
GCACGCCTAGAGTGGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGCAGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGCAGAGGAAGGAGAAGGAGAAAGAGAAGGAGAAG
AAGGAGAAGGAGAAGAAGGAGAAGGAGAAGAAGGAGAAGAAGGAGGACGA
CGAACAAGAAAAGGGGAATTGACAGTAGTAGCGCGAGATGGAGCAGCAGC
AGCGGCAGCAGGAGGGTCAGAAGCAGCAGCAACATCACTGGCGGAAGGAG
GAGCAAAGGGGGGGGGAGAGGAGGAGGAGGGGTTGGGCTGGGGGGGGTTG
GGTGGAGGGATGGCATATGGAGGGGGAGTTGTGTATCTTGGGGCGAAGAG
CTCACCCTTCTCTTTTGCTCCTACAGGTGGTAGTAGTGGGGGGATGTGA back to top Coding sequence (CDS) from alignment at chr24:394053..396901-
>NO24G01490.1 ID=NO24G01490.1|Name=NO24G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at chr24:394053..396901- (Nannochloropsis oceanica) back to top