NO24G01350, NO24G01350 (gene) Nannochloropsis oceanica

Overview
NameNO24G01350
Unique NameNO24G01350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2050
Alignment locationchr24:366556..368605 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:366556..368605 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO24G01350 vs. NCBI_GenBank
Match: EWM24346.1 (ankyrin repeat domain protein [Nannochloropsis gaditana])

HSP 1 Score: 364.0 bits (933), Expect = 8.200e-97
Identity = 270/629 (42.93%), Postives = 334/629 (53.10%), Query Frame = 0 
Query:    1 MKKITYFASPRTDSIGGDSAKKQRKPSFSLAPTSGTTPRGNESLDLTADVREVLYDGGNS-----HSNHNINSSISPRSINSPRKLPPALTSXXXXXXXXXXXXXXGKIDFSLLSSLSPGRXXXXXXXXXXXXXXXXXXXXLKAATSSAPAGAGNLTDQMPSSPVSFLPTFNSITHPSSSFVPA---------------GGTPPNTARSPRTHSNTAATILXXXXXXXXXXXSPHRQRAEGLRGLLAAAL----------GHASVTPLMLAAGAGEEETVKFLLDLGREGEKSGRVLVDVLKSDAGKKTALHHAAMGNLDSPGVALLLLGKQQQ--HQQLLEAVDVEGRTALHYAAVNGHLKMLRVLLSGEKGGVSPLSLVMDNEGLDPLQFLLSK---------VGG-----------------EGGKMSAAHRTEV---------------------AVADAEDXXXXEIVQPIEHQLLRIFRAADISQEASDVYLDNLRRHGYDNLISLHAIAADRFKMTLGKYVPDRQDRKRILKALHD--DDGNGSGHICSNLKHLPVGEYLKHLLSVPDEMAGRYAEGLGGMNVHTGAQLCQASYDEVELNLAGILLQGHKKALKILLKTSAA 549
            MKKIT FASPR   +GG + +  R+ + S      +TP    +LDLTAD++E+L  G  +     +S  N     +    +SPRK+P A TS              G +DFS LSSLSPGR                    L+A   SAPAGAG ++                   P SS  PA                GTPPNTARSP+     A  +            + H    +G   LL   L          G+ + TPLMLAAGAG+EETV++LL        SGR   DV  +D  ++TALHH A G  D+P VAL LLG  Q+    Q L+  DVEGRTA+HYAA  G+L++LR LL     G +PL+  +D EGLDPLQ LL +          GG                 EGG + +    EV                     AV DA D    +I QP+EHQLL +FRA+ I  +AS+VYLDNLRRHGYDNL++L AIA++RFK++LGKYVPDRQDRKR++KAL+   D  + SG I     HLPVGEYLKHLLSV D++A RYAEGL GMNVHTGAQL  ASYDEVE+NL   LLQGHKKALKI L+  AA
Sbjct:   18 MKKITSFASPR--RLGGKADEAAREEALS------STPNSESALDLTADIKEILIAGARTSQATKNSPRNGLDGQNNNISSSPRKIPAAFTSLAPPLSPESPREKRGLLDFSALSSLSPGR-----KKVAGLGCIRNTTSPLRA--GSAPAGAGFVSQXXXXXXXXXXXXXYKF--PLSSRSPARGSSGSLRLHSLRNLTGTPPNTARSPK----PADGLWGLLGYTSPLDSAVHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLL-----RALSGR--ADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLG---KGANPLA--VDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGGALHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAA 613
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BLAST of NO24G01350 vs. NCBI_GenBank
Match: XP_005855580.1 (putative dna binding component of sbf [Nannochloropsis gaditana CCMP526] >EKU20772.1 putative dna binding component of sbf [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 307.4 bits (786), Expect = 9.200e-80
Identity = 191/361 (52.91%), Postives = 229/361 (63.43%), Query Frame = 0 
Query:  239 MLAAGAGEEETVKFLLDLGREGEKSGRVLVDVLKSDAGKKTALHHAAMGNLDSPGVALLLLGKQQQ--HQQLLEAVDVEGRTALHYAAVNGHLKMLRVLLSGEKGGVSPLSLVMDNEGLDPLQFLLSK---------VGG-----------------EGGKMSAAHRTEV---------------------AVADAEDXXXXEIVQPIEHQLLRIFRAADISQEASDVYLDNLRRHGYDNLISLHAIAADRFKMTLGKYVPDRQDRKRILKALHD--DDGNGSGHICSNLKHLPVGEYLKHLLSVPDEMAGRYAEGLGGMNVHTGAQLCQASYDEVELNLAGILLQGHKKALKILLKTSAA 549
            MLAAGAG+EETV++LL        SGR   DV  +D  ++TALHH A G  D+PGVAL LLG  Q+    Q L+  DVEGRTA+HYAA  G+L++LR LL     G +P  LV+D EGLDPLQ LL +          GG                 EGG + +    EV                     AV DA D    +I QP+EHQLL +FRA+ I  +AS+VYLDNLRRHGYDNL++L AIA++RFK++LGKYVPDRQDRKR++KAL+   D  + SG I     HLPVGEYLKHLLSV D++A RYAEGL GMNVHTGAQL  ASYDEVE+NL   LLQGHKKALKI L+  AA
Sbjct:    1 MLAAGAGQEETVRYLL-----RALSGR--ADVWATDGARRTALHHLARGTSDAPGVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLG---KGANP--LVVDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGGTLHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAA 349
The following BLAST results are available for this feature:
BLAST of NO24G01350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM24346.18.200e-9742.93ankyrin repeat domain protein [Nannochloropsis gad... [more]
XP_005855580.19.200e-8052.91putative dna binding component of sbf [Nannochloro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01350.1NO24G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|132257gene_7359Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100105g10gene6135Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01350.1NO24G01350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01350 ID=NO24G01350|Name=NO24G01350|organism=Nannochloropsis oceanica|type=gene|length=2050bp
ATGAAAAAGATCACATATTTCGCCTCGCCCCGCACTGACAGCATCGGCGG
GGACAGCGCCAAGAAGCAGAGGAAACCATCCTTCTCTCTCGCCCCTACCT
CCGGTACCACCCCCAGAGGCAATGAAAGCTTGGACTTAACGGCCGACGTC
CGTGAAGTCCTCTACGACGGAGGCAACAGCCATAGCAACCACAATATCAA
CAGTAGCATCAGTCCCCGCAGCATCAATAGCCCCCGCAAGCTCCCTCCTG
CCTTGACCAGCATTGCCTCCCCTCCTTCCCCCCCCTCTCCTAAGGAAAAA
CGCGGCAAGATCGACTTCTCTCTGCTCAGCTCCTTGTCACCCGGTCGGAA
GAAAAGCAGCACTAGCTGCTGCAGCCGTAGCAGCAGTAATAGCAGTCCAA
CCATTACCCTCAAGGCTGCCACTTCTAGCGCTCCCGCTGGTGCGGGGAAT
CTGACCGACCAAATGCCTTCCTCCCCTGTCTCCTTCCTCCCCACTTTCAA
CAGTATTACACACCCCTCCTCCTCCTTTGTACCCGCTGGAGGCACCCCAC
CCAATACTGCCCGCTCTCCTCGCACTCACAGTAATACCGCTGCCACCATC
CTTTCCTCCCCTTCCTCCTCCTCCTCCTCCACCCGCTCTCCACACCGCCA
GCGCGCAGAGGGTCTCAGGGGACTTCTTGgttactcctccccctcccccc
ctccgactcccccatccacctcgctgcccgtcaaggcgatatctctctcc
ttcagactcttcttgcctccaacccctccttagCTGCTGCCTTGGGACAT
GCCTCAGTGACACCCTTAATGCTCGCCGCTGGAGCAGGAGAGGAAGAGAC
CGTGAAATTCTTGCTAGATCTAGGGAGGGAAGGAGAGAAGAGTGGACGGG
TGCTAGTGGATGTTCTCAAGAGTGATGCAGGAAAGAAGACAGCACTGCAT
CATGCGGCCATGGGAAACTTAGATTCGCCTGGAGTGGCACTGCTGCTCCT
TGGGAAGCAGCAGCAGCATCAACAGTTGTTAGAAGCTGTGGACGTCGAGG
GGAGGACGGCGTTGCACTACGCTGCTGTCAACGGACATTTAAAAATGCTA
CGTGTGTTGTTAAGTGGAGAGAAGGGGGGAGTAAGTCCTCTTTCCTTGGT
GATGGATAATGAGGGTTTGGACCCGCTACAATTTTTGTTGTCCAAAGTAG
GAGGAGAGGGTGGCAAGATGTCGGCGGCGCATCGCACGGAAGTGgtccgt
acattgcaggacgcacaggagcgggcgaaaaggaagagcaacagtaacag
cagtggggatgggaatgagatggagggcaggagtccggggggggggtgcg
acgacgtgtgtatgggattgtgtggcccgcttgtgtggggagGCAGTGGC
AGACGCGGAGGACGAGGAAGAGGAAGAAATCGTGCAGCgtaagtttctgt
gtagttatgtggtctgtgagcgatgtatattttctcttctatttttctgc
tgtcgctatctcgtcttccatatcaactcatccgccctccctcccttcct
ccctccctctcttcctcctcacagCGATTGAACACCAGCTCCTCCGAATT
TTCCGCGCTGCAGATATCTCTCAAGAAGCCAGTGACGTGTATCTAGATAA
CCTTCGCCGTCACGGCTACGATAACTTAATTTCCCTTCATGCCATCGCCG
CCGATCGCTTCAAAATGACCTTAGGGAAATACGTCCCCGACCGGCAAGAC
CGCAAAAGAATCCTCAAAGCCCTTCATGATGATGACGGGAATGGAAGTGG
TCACATTTGTTCCAACCTCAAGCACTTACCTGTTGGAGAGTATCTAAAGC
ATCTATTAAGTGTGCCTGATGAGATGGCGGGGCGTTACGCAGAGGGCTTG
GGAGGGATGAACGTGCACACGGGCGCTCAGTTGTGTCAGGCATCCTACGA
TGAAGTAGAGTTGAATTTGGCTGGGATCTTATTGCAAGGGCACAAAAAGG
CGTTGAAGATTTTATTGAAGACAAGCGCAGCAGCGTCGCCGCTAGCATAG
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protein sequence of NO24G01350.1

>NO24G01350.1-protein ID=NO24G01350.1-protein|Name=NO24G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MKKITYFASPRTDSIGGDSAKKQRKPSFSLAPTSGTTPRGNESLDLTADV
REVLYDGGNSHSNHNINSSISPRSINSPRKLPPALTSIASPPSPPSPKEK
RGKIDFSLLSSLSPGRKKSSTSCCSRSSSNSSPTITLKAATSSAPAGAGN
LTDQMPSSPVSFLPTFNSITHPSSSFVPAGGTPPNTARSPRTHSNTAATI
LSSPSSSSSSTRSPHRQRAEGLRGLLAAALGHASVTPLMLAAGAGEEETV
KFLLDLGREGEKSGRVLVDVLKSDAGKKTALHHAAMGNLDSPGVALLLLG
KQQQHQQLLEAVDVEGRTALHYAAVNGHLKMLRVLLSGEKGGVSPLSLVM
DNEGLDPLQFLLSKVGGEGGKMSAAHRTEVAVADAEDEEEEEIVQPIEHQ
LLRIFRAADISQEASDVYLDNLRRHGYDNLISLHAIAADRFKMTLGKYVP
DRQDRKRILKALHDDDGNGSGHICSNLKHLPVGEYLKHLLSVPDEMAGRY
AEGLGGMNVHTGAQLCQASYDEVELNLAGILLQGHKKALKILLKTSAAAS
PLA*
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Synonyms
Publications