NO24G01350.1, NO24G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01350.1
Unique NameNO24G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1662
Alignment locationchr24:366556..368605 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:366556..368605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01350.1 vs.
Match: EWM24346.1 (ankyrin repeat domain protein [Nannochloropsis gaditana])

HSP 1 Score: 393.7 bits (1010), Expect = 9.700e-106
Identity = 287/625 (45.92%), Postives = 364/625 (58.24%), Query Frame = 0 
Query:    1 MKKITYFASPRTDSIGGDSAKKQRKPSFSLAPTSGTTPRGNESLDLTADVREVLYDGGNS-----HSNHNINSSISPRSINSPRKLPPALTSIASPPSPPSPKEKRGKIDFSLLSSLSPGRKKSSTSCCSRSSSNSSPTITLKAATSSAPAGAGNLTDQMPSSPVSFLPTFNSITHPSSSFVPA---------------GGTPPNTARSPRTHSNTAATI-LSSPSSSSSSTRS-----PHRQRAEGLRGLLAAALGHASVTPLMLAAGAGEEETVKFLLDLGREGEKSGRVLVDVLKSDAGKKTALHHAAMGNLDSPGVALLLLGKQQQ--HQQLLEAVDVEGRTALHYAAVNGHLKMLRVLLSGEKGGVSPLSLVMDNEGLDPLQFLLSK------VGGEGGKMS---------AAHRTEVAVADAEDE--------------------------------EEEEIVQPIEHQLLRIFRAADISQEASDVYLDNLRRHGYDNLISLHAIAADRFKMTLGKYVPDRQDRKRILKALHD--DDGNGSGHICSNLKHLPVGEYLKHLLSVPDEMAGRYAEGLGGMNVHTGAQLCQASYDEVELNLAGILLQGHKKALKILLKTSAA 549
            MKKIT FASPR   +GG + +  R+ + S      +TP    +LDLTAD++E+L  G  +     +S  N     +    +SPRK+P A TS+A P SP SP+EKRG +DFS LSSLSPGRKK +   C R++     T  L+A   SAPAGAG ++   P+SP+S  P+  S   P SS  PA                GTPPNTARSP+        +  +SP  S+    +     P  Q        L +  G+ + TPLMLAAGAG+EETV++LL        SGR   DV  +D  ++TALHH A G  D+P VAL LLG  Q+    Q L+  DVEGRTA+HYAA  G+L++LR LL     G +PL+  +D EGLDPLQ LL +      V  +GG++          A   TE     + D                                 EE++I QP+EHQLL +FRA+ I  +AS+VYLDNLRRHGYDNL++L AIA++RFK++LGKYVPDRQDRKR++KAL+   D  + SG I     HLPVGEYLKHLLSV D++A RYAEGL GMNVHTGAQL  ASYDEVE+NL   LLQGHKKALKI L+  AA
Sbjct:   18 MKKITSFASPRR--LGGKADEAAREEALS------STPNSESALDLTADIKEILIAGARTSQATKNSPRNGLDGQNNNISSSPRKIPAAFTSLAPPLSPESPREKRGLLDFSALSSLSPGRKKVAGLGCIRNT-----TSPLRA--GSAPAGAGFVS--QPTSPISSSPSSPSYKFPLSSRSPARGSSGSLRLHSLRNLTGTPPNTARSPKPADGLWGLLGYTSPLDSAVHEAARQGDLPLLQTLLTQNPTLVSTPGNDNATPLMLAAGAGQEETVRYLL-----RALSGR--ADVWATDGARRTALHHLARGTSDAPSVALCLLGLDQEGGRPQHLDWEDVEGRTAVHYAASRGNLQVLRFLLG---KGANPLA--VDKEGLDPLQLLLQEKSRSVSVQSKGGEIERCLQEAQQHARALTEGGALHSHDSQEVSKKKGSGITCVWECMARLCGEAVEDAGDGEEDDIPQPVEHQLLCVFRASSIPPDASEVYLDNLRRHGYDNLMALRAIASERFKLSLGKYVPDRQDRKRLIKALNAMIDTVDESGKIPEPPLHLPVGEYLKHLLSVSDDLAMRYAEGLRGMNVHTGAQLGTASYDEVEMNLGSTLLQGHKKALKIWLRLRAA 613
The following BLAST results are available for this feature:
BLAST of NO24G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24346.19.700e-10645.92ankyrin repeat domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01350NO24G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01350.1NO24G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01350.1.cds1NO24G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01350.1.cds2NO24G01350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01350.1.cds3NO24G01350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01350.1.cds4NO24G01350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01350.1 ID=NO24G01350.1|Name=NO24G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp
ATGAAAAAGATCACATATTTCGCCTCGCCCCGCACTGACAGCATCGGCGG
GGACAGCGCCAAGAAGCAGAGGAAACCATCCTTCTCTCTCGCCCCTACCT
CCGGTACCACCCCCAGAGGCAATGAAAGCTTGGACTTAACGGCCGACGTC
CGTGAAGTCCTCTACGACGGAGGCAACAGCCATAGCAACCACAATATCAA
CAGTAGCATCAGTCCCCGCAGCATCAATAGCCCCCGCAAGCTCCCTCCTG
CCTTGACCAGCATTGCCTCCCCTCCTTCCCCCCCCTCTCCTAAGGAAAAA
CGCGGCAAGATCGACTTCTCTCTGCTCAGCTCCTTGTCACCCGGTCGGAA
GAAAAGCAGCACTAGCTGCTGCAGCCGTAGCAGCAGTAATAGCAGTCCAA
CCATTACCCTCAAGGCTGCCACTTCTAGCGCTCCCGCTGGTGCGGGGAAT
CTGACCGACCAAATGCCTTCCTCCCCTGTCTCCTTCCTCCCCACTTTCAA
CAGTATTACACACCCCTCCTCCTCCTTTGTACCCGCTGGAGGCACCCCAC
CCAATACTGCCCGCTCTCCTCGCACTCACAGTAATACCGCTGCCACCATC
CTTTCCTCCCCTTCCTCCTCCTCCTCCTCCACCCGCTCTCCACACCGCCA
GCGCGCAGAGGGTCTCAGGGGACTTCTTGCTGCTGCCTTGGGACATGCCT
CAGTGACACCCTTAATGCTCGCCGCTGGAGCAGGAGAGGAAGAGACCGTG
AAATTCTTGCTAGATCTAGGGAGGGAAGGAGAGAAGAGTGGACGGGTGCT
AGTGGATGTTCTCAAGAGTGATGCAGGAAAGAAGACAGCACTGCATCATG
CGGCCATGGGAAACTTAGATTCGCCTGGAGTGGCACTGCTGCTCCTTGGG
AAGCAGCAGCAGCATCAACAGTTGTTAGAAGCTGTGGACGTCGAGGGGAG
GACGGCGTTGCACTACGCTGCTGTCAACGGACATTTAAAAATGCTACGTG
TGTTGTTAAGTGGAGAGAAGGGGGGAGTAAGTCCTCTTTCCTTGGTGATG
GATAATGAGGGTTTGGACCCGCTACAATTTTTGTTGTCCAAAGTAGGAGG
AGAGGGTGGCAAGATGTCGGCGGCGCATCGCACGGAAGTGGCAGTGGCAG
ACGCGGAGGACGAGGAAGAGGAAGAAATCGTGCAGCCGATTGAACACCAG
CTCCTCCGAATTTTCCGCGCTGCAGATATCTCTCAAGAAGCCAGTGACGT
GTATCTAGATAACCTTCGCCGTCACGGCTACGATAACTTAATTTCCCTTC
ATGCCATCGCCGCCGATCGCTTCAAAATGACCTTAGGGAAATACGTCCCC
GACCGGCAAGACCGCAAAAGAATCCTCAAAGCCCTTCATGATGATGACGG
GAATGGAAGTGGTCACATTTGTTCCAACCTCAAGCACTTACCTGTTGGAG
AGTATCTAAAGCATCTATTAAGTGTGCCTGATGAGATGGCGGGGCGTTAC
GCAGAGGGCTTGGGAGGGATGAACGTGCACACGGGCGCTCAGTTGTGTCA
GGCATCCTACGATGAAGTAGAGTTGAATTTGGCTGGGATCTTATTGCAAG
GGCACAAAAAGGCGTTGAAGATTTTATTGAAGACAAGCGCAGCAGCGTCG
CCGCTAGCATAG
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protein sequence of NO24G01350.1

>NO24G01350.1-protein ID=NO24G01350.1-protein|Name=NO24G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MKKITYFASPRTDSIGGDSAKKQRKPSFSLAPTSGTTPRGNESLDLTADV
REVLYDGGNSHSNHNINSSISPRSINSPRKLPPALTSIASPPSPPSPKEK
RGKIDFSLLSSLSPGRKKSSTSCCSRSSSNSSPTITLKAATSSAPAGAGN
LTDQMPSSPVSFLPTFNSITHPSSSFVPAGGTPPNTARSPRTHSNTAATI
LSSPSSSSSSTRSPHRQRAEGLRGLLAAALGHASVTPLMLAAGAGEEETV
KFLLDLGREGEKSGRVLVDVLKSDAGKKTALHHAAMGNLDSPGVALLLLG
KQQQHQQLLEAVDVEGRTALHYAAVNGHLKMLRVLLSGEKGGVSPLSLVM
DNEGLDPLQFLLSKVGGEGGKMSAAHRTEVAVADAEDEEEEEIVQPIEHQ
LLRIFRAADISQEASDVYLDNLRRHGYDNLISLHAIAADRFKMTLGKYVP
DRQDRKRILKALHDDDGNGSGHICSNLKHLPVGEYLKHLLSVPDEMAGRY
AEGLGGMNVHTGAQLCQASYDEVELNLAGILLQGHKKALKILLKTSAAAS
PLA*
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mRNA from alignment at chr24:366556..368605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01350.1 ID=NO24G01350.1|Name=NO24G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp|location=Sequence derived from alignment at chr24:366556..368605+ (Nannochloropsis oceanica)
ATGAAAAAGATCACATATTTCGCCTCGCCCCGCACTGACAGCATCGGCGG
GGACAGCGCCAAGAAGCAGAGGAAACCATCCTTCTCTCTCGCCCCTACCT
CCGGTACCACCCCCAGAGGCAATGAAAGCTTGGACTTAACGGCCGACGTC
CGTGAAGTCCTCTACGACGGAGGCAACAGCCATAGCAACCACAATATCAA
CAGTAGCATCAGTCCCCGCAGCATCAATAGCCCCCGCAAGCTCCCTCCTG
CCTTGACCAGCATTGCCTCCCCTCCTTCCCCCCCCTCTCCTAAGGAAAAA
CGCGGCAAGATCGACTTCTCTCTGCTCAGCTCCTTGTCACCCGGTCGGAA
GAAAAGCAGCACTAGCTGCTGCAGCCGTAGCAGCAGTAATAGCAGTCCAA
CCATTACCCTCAAGGCTGCCACTTCTAGCGCTCCCGCTGGTGCGGGGAAT
CTGACCGACCAAATGCCTTCCTCCCCTGTCTCCTTCCTCCCCACTTTCAA
CAGTATTACACACCCCTCCTCCTCCTTTGTACCCGCTGGAGGCACCCCAC
CCAATACTGCCCGCTCTCCTCGCACTCACAGTAATACCGCTGCCACCATC
CTTTCCTCCCCTTCCTCCTCCTCCTCCTCCACCCGCTCTCCACACCGCCA
GCGCGCAGAGGGTCTCAGGGGACTTCTTGGTTACTCCTCCCCCTCCCCCC
CTCCGACTCCCCCATCCACCTCGCTGCCCGTCAAGGCGATATCTCTCTCC
TTCAGACTCTTCTTGCCTCCAACCCCTCCTTAGCTGCTGCCTTGGGACAT
GCCTCAGTGACACCCTTAATGCTCGCCGCTGGAGCAGGAGAGGAAGAGAC
CGTGAAATTCTTGCTAGATCTAGGGAGGGAAGGAGAGAAGAGTGGACGGG
TGCTAGTGGATGTTCTCAAGAGTGATGCAGGAAAGAAGACAGCACTGCAT
CATGCGGCCATGGGAAACTTAGATTCGCCTGGAGTGGCACTGCTGCTCCT
TGGGAAGCAGCAGCAGCATCAACAGTTGTTAGAAGCTGTGGACGTCGAGG
GGAGGACGGCGTTGCACTACGCTGCTGTCAACGGACATTTAAAAATGCTA
CGTGTGTTGTTAAGTGGAGAGAAGGGGGGAGTAAGTCCTCTTTCCTTGGT
GATGGATAATGAGGGTTTGGACCCGCTACAATTTTTGTTGTCCAAAGTAG
GAGGAGAGGGTGGCAAGATGTCGGCGGCGCATCGCACGGAAGTGGTCCGT
ACATTGCAGGACGCACAGGAGCGGGCGAAAAGGAAGAGCAACAGTAACAG
CAGTGGGGATGGGAATGAGATGGAGGGCAGGAGTCCGGGGGGGGGGTGCG
ACGACGTGTGTATGGGATTGTGTGGCCCGCTTGTGTGGGGAGGCAGTGGC
AGACGCGGAGGACGAGGAAGAGGAAGAAATCGTGCAGCGTAAGTTTCTGT
GTAGTTATGTGGTCTGTGAGCGATGTATATTTTCTCTTCTATTTTTCTGC
TGTCGCTATCTCGTCTTCCATATCAACTCATCCGCCCTCCCTCCCTTCCT
CCCTCCCTCTCTTCCTCCTCACAGCGATTGAACACCAGCTCCTCCGAATT
TTCCGCGCTGCAGATATCTCTCAAGAAGCCAGTGACGTGTATCTAGATAA
CCTTCGCCGTCACGGCTACGATAACTTAATTTCCCTTCATGCCATCGCCG
CCGATCGCTTCAAAATGACCTTAGGGAAATACGTCCCCGACCGGCAAGAC
CGCAAAAGAATCCTCAAAGCCCTTCATGATGATGACGGGAATGGAAGTGG
TCACATTTGTTCCAACCTCAAGCACTTACCTGTTGGAGAGTATCTAAAGC
ATCTATTAAGTGTGCCTGATGAGATGGCGGGGCGTTACGCAGAGGGCTTG
GGAGGGATGAACGTGCACACGGGCGCTCAGTTGTGTCAGGCATCCTACGA
TGAAGTAGAGTTGAATTTGGCTGGGATCTTATTGCAAGGGCACAAAAAGG
CGTTGAAGATTTTATTGAAGACAAGCGCAGCAGCGTCGCCGCTAGCATAG
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Coding sequence (CDS) from alignment at chr24:366556..368605+

>NO24G01350.1 ID=NO24G01350.1|Name=NO24G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr24:366556..368605+ (Nannochloropsis oceanica)
ATGAAAAAGATCACATATTTCGCCTCGCCCCGCACTGACAGCATCGGCGG
GGACAGCGCCAAGAAGCAGAGGAAACCATCCTTCTCTCTCGCCCCTACCT
CCGGTACCACCCCCAGAGGCAATGAAAGCTTGGACTTAACGGCCGACGTC
CGTGAAGTCCTCTACGACGGAGGCAACAGCCATAGCAACCACAATATCAA
CAGTAGCATCAGTCCCCGCAGCATCAATAGCCCCCGCAAGCTCCCTCCTG
CCTTGACCAGCATTGCCTCCCCTCCTTCCCCCCCCTCTCCTAAGGAAAAA
CGCGGCAAGATCGACTTCTCTCTGCTCAGCTCCTTGTCACCCGGTCGGAA
GAAAAGCAGCACTAGCTGCTGCAGCCGTAGCAGCAGTAATAGCAGTCCAA
CCATTACCCTCAAGGCTGCCACTTCTAGCGCTCCCGCTGGTGCGGGGAAT
CTGACCGACCAAATGCCTTCCTCCCCTGTCTCCTTCCTCCCCACTTTCAA
CAGTATTACACACCCCTCCTCCTCCTTTGTACCCGCTGGAGGCACCCCAC
CCAATACTGCCCGCTCTCCTCGCACTCACAGTAATACCGCTGCCACCATC
CTTTCCTCCCCTTCCTCCTCCTCCTCCTCCACCCGCTCTCCACACCGCCA
GCGCGCAGAGGGTCTCAGGGGACTTCTTGCTGCTGCCTTGGGACATGCCT
CAGTGACACCCTTAATGCTCGCCGCTGGAGCAGGAGAGGAAGAGACCGTG
AAATTCTTGCTAGATCTAGGGAGGGAAGGAGAGAAGAGTGGACGGGTGCT
AGTGGATGTTCTCAAGAGTGATGCAGGAAAGAAGACAGCACTGCATCATG
CGGCCATGGGAAACTTAGATTCGCCTGGAGTGGCACTGCTGCTCCTTGGG
AAGCAGCAGCAGCATCAACAGTTGTTAGAAGCTGTGGACGTCGAGGGGAG
GACGGCGTTGCACTACGCTGCTGTCAACGGACATTTAAAAATGCTACGTG
TGTTGTTAAGTGGAGAGAAGGGGGGAGTAAGTCCTCTTTCCTTGGTGATG
GATAATGAGGGTTTGGACCCGCTACAATTTTTGTTGTCCAAAGTAGGAGG
AGAGGGTGGCAAGATGTCGGCGGCGCATCGCACGGAAGTGGCAGTGGCAG
ACGCGGAGGACGAGGAAGAGGAAGAAATCGTGCAGCCGATTGAACACCAG
CTCCTCCGAATTTTCCGCGCTGCAGATATCTCTCAAGAAGCCAGTGACGT
GTATCTAGATAACCTTCGCCGTCACGGCTACGATAACTTAATTTCCCTTC
ATGCCATCGCCGCCGATCGCTTCAAAATGACCTTAGGGAAATACGTCCCC
GACCGGCAAGACCGCAAAAGAATCCTCAAAGCCCTTCATGATGATGACGG
GAATGGAAGTGGTCACATTTGTTCCAACCTCAAGCACTTACCTGTTGGAG
AGTATCTAAAGCATCTATTAAGTGTGCCTGATGAGATGGCGGGGCGTTAC
GCAGAGGGCTTGGGAGGGATGAACGTGCACACGGGCGCTCAGTTGTGTCA
GGCATCCTACGATGAAGTAGAGTTGAATTTGGCTGGGATCTTATTGCAAG
GGCACAAAAAGGCGTTGAAGATTTTATTGAAGACAAGCGCAGCAGCGTCG
CCGCTAGCATAG
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Synonyms
Publications