NO24G00620, NO24G00620 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G00620 vs. NCBI_GenBank
Match: EWM21142.1 (myb-like dna-binding domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 175.6 bits (444), Expect = 4.300e-40 Identity = 152/440 (34.55%), Postives = 176/440 (40.00%), Query Frame = 0 Query: 46 SFLFTPSAPAALAVMPRATGAMTSTKRRSSNIRGNPNSDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHV----------------KNHCSSTSSKRSRSRGSDNFPSSGLSAQQQQRHTMAPDTLEPDLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMLTTLLQKQQGQQN-HQQEINMRGVMERELGKGELSNSLVTDPNIMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRCRKAANLAELQRYMTAAADAANEVLKEAGGGE-----------------------------------------RWNEEAGGYRGVNLPSSAWASQRSLNATRRA 428 SF F S P L AT ++ +K R S R N NSDRRVWSK EDDSIR LVAAHGTRSWS IAEK+A+DKTLSI+GRTGKQCRERWHNHLDPNINKNAWTE+EE+IMS+AHRELG + +S R N P SG + + SML Q + G + H + V G L+ + ++A RCRKAANLAELQRYMTAAADAANEVL+E G GE + EE G G+NLP+SAWAS RS ATRRA Sbjct: 52 SFPFATSTP-TLGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRLNREVAELGTSLRGDQEARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLNLPATANSGSLSA--------------------ICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGEAAPHLSALTAVAETGIKPVESPRQSTNVCTSATDLFRDKLRKKLEETG---GINLPTSAWASLRSQKATRRA 467
BLAST of NO24G00620 vs. NCBI_GenBank
Match: XP_009041130.1 (hypothetical protein AURANDRAFT_39143 [Aureococcus anophagefferens] >EGB04144.1 hypothetical protein AURANDRAFT_39143 [Aureococcus anophagefferens]) HSP 1 Score: 156.8 bits (395), Expect = 2.100e-34 Identity = 75/114 (65.79%), Postives = 90/114 (78.95%), Query Frame = 0 Query: 82 NSDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSR 196 + DRRVWS+ ED +I+ LV +GTRSWS IAE + +D +I GRTGKQCRERWHNHLDP+INK+AWT EE++M+DAH+ LGNKWSEIAK LPGRTDNHVKNH S + R Sbjct: 3 SGDRRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSD--YNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVR 114
BLAST of NO24G00620 vs. NCBI_GenBank
Match: XP_009041171.1 (hypothetical protein AURANDRAFT_55303 [Aureococcus anophagefferens] >EGB04186.1 hypothetical protein AURANDRAFT_55303 [Aureococcus anophagefferens]) HSP 1 Score: 153.3 bits (386), Expect = 2.300e-33 Identity = 82/135 (60.74%), Postives = 97/135 (71.85%), Query Frame = 0 Query: 84 DRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELG-NKWSEIAKRLPGRTDNHVKNHCSSTSSKRSR------SRGSDNFPSSGLSAQQ 212 DRRVW+ ED++IR LV +GTRSWS IAE + D +I GRTGKQCRERWHNHLDP+INK AWTE+EE+IM+DAH+ LG NKWSEIAK LPGRTDNHVKNH S + R + G N G+ A+Q Sbjct: 6 DRRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQD--FNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKNHWYSFMRRNVRRLNREVNDGQPNHQHVGIVAKQ 138
BLAST of NO24G00620 vs. NCBI_GenBank
Match: CBJ48683.1 (Myb-like DNA-binding domain containing protein [Ectocarpus siliculosus]) HSP 1 Score: 144.1 bits (362), Expect = 1.400e-30 Identity = 75/131 (57.25%), Postives = 92/131 (70.23%), Query Frame = 0 Query: 66 AMTSTKRRSSNIRGNPNSDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSRS 197 ++ S RRS N RRVWS+ EDD+IR LV HGTRSW+TI E +AAD SI GR+GKQCRERWHNHLDP+I K WT +EE +++ E+GN+WSEIAKRLPGRTDN VKN S+ + R+ Sbjct: 6 SIVSESRRSEN--------RRVWSREEDDAIRVLVKRHGTRSWATIEEHLAAD--YSIVGRSGKQCRERWHNHLDPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFWYSSMRRNVRT 126
BLAST of NO24G00620 vs. NCBI_GenBank
Match: GBG23967.1 (Transcription factor MYB118 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 143.3 bits (360), Expect = 2.400e-30 Identity = 78/151 (51.66%), Postives = 96/151 (63.58%), Query Frame = 0 Query: 80 NPNSDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSRSRGS---DNFPSSGLSAQQQQRH-------TMAPD 221 N + DRR WS+ EDD+IR LV HGT+ WSTIA ++ +D I RTGKQCRERWHNHLDP I K+ WT +EE IM+ AH+ LGN+WSEI+K LPGRTDN +KNH S + R D P S A Q +H T++PD Sbjct: 9 NGSGDRRAWSQREDDAIRTLVKEHGTKRWSTIATRLISD--YRIDCRTGKQCRERWHNHLDPTIRKDPWTAEEEAIMAKAHQRLGNRWSEISKLLPGRTDNAIKNHWYSMMRRNVRRLNKEVLDGMPMSAPLATPQTKHKRKKPLATISPD 157
BLAST of NO24G00620 vs. NCBI_GenBank
Match: XP_004027480.1 (myeloblastosis oncogene family protein, putative [Ichthyophthirius multifiliis] >EGR28135.1 myeloblastosis oncogene family protein, putative [Ichthyophthirius multifiliis]) HSP 1 Score: 138.7 bits (348), Expect = 5.800e-29 Identity = 66/113 (58.41%), Postives = 85/113 (75.22%), Query Frame = 0 Query: 83 SDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSR 196 +DRR WS ED I+ LVA +G + W+ IA+K+ ++ S+ GR+GKQCRERWHNHLDP INK W+EKEEKI+ +AH++ GNKW+EIAK LPGRTDN +KNH ST + R Sbjct: 2 TDRRAWSDNEDQVIKELVALYGIKKWTIIAQKM--EEIYSLKGRSGKQCRERWHNHLDPGINKLPWSEKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNHFYSTLRRSLR 112
BLAST of NO24G00620 vs. NCBI_GenBank
Match: XP_004032027.1 (myb protein, putative, partial [Ichthyophthirius multifiliis] >EGR30440.1 myb protein, putative, partial [Ichthyophthirius multifiliis]) HSP 1 Score: 137.1 bits (344), Expect = 1.700e-28 Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 0 Query: 83 SDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNH 186 +DRR W ED I+ LVA +G + W+ IA+K+ ++ S+ GR+GKQCRERWHNHLDP INK WT KEEKI+ +AH++ GNKW+EIAK LPGRTDN +KNH Sbjct: 2 TDRRSWDNQEDKVIKELVALYGVKKWTVIAQKM--EQIYSLKGRSGKQCRERWHNHLDPGINKLPWTNKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNH 102
BLAST of NO24G00620 vs. NCBI_GenBank
Match: XP_001027695.2 (Myb-like DNA-binding domain protein [Tetrahymena thermophila SB210] >EAS07453.2 Myb-like DNA-binding domain protein [Tetrahymena thermophila SB210]) HSP 1 Score: 135.6 bits (340), Expect = 4.900e-28 Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 0 Query: 84 DRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSR 196 DRR WS ED +IR LV G + W+ +A+K+ ++ ++SGR+GKQCRERWHNHLDP+INK WTE+EEKI+ + H++ GNKW+EIA+ LPGRTDN +KNH ST + R Sbjct: 123 DRRAWSDDEDKAIRDLVNTFGIKKWTIVAQKM--EELYNLSGRSGKQCRERWHNHLDPHINKQPWTEEEEKIIFENHKKCGNKWAEIARHLPGRTDNSIKNHFYSTLRRSLR 232
BLAST of NO24G00620 vs. NCBI_GenBank
Match: KRW98813.1 (Homeodomain protein [Pseudocohnilembus persalinus]) HSP 1 Score: 134.0 bits (336), Expect = 1.400e-27 Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 0 Query: 84 DRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSR 196 DRR W+ ED +I LV +G + W+ +A+K+ D ++ R+GKQCRERWHNHLDP+INK+ WTE+EEK++ +AHR+ GNKW+EIAK LPGRTDN +KNH ST + R Sbjct: 8 DRRAWTSEEDKAIIELVQKYGIKKWTIVAKKMQED--YNLKDRSGKQCRERWHNHLDPSINKSEWTEEEEKVIFEAHRQFGNKWAEIAKLLPGRTDNSIKNHFYSTLRRSLR 117
BLAST of NO24G00620 vs. NCBI_GenBank
Match: CBN78191.1 (Myb-like DNA-binding domain containing protein [Ectocarpus siliculosus]) HSP 1 Score: 133.3 bits (334), Expect = 2.400e-27 Identity = 62/104 (59.62%), Postives = 77/104 (74.04%), Query Frame = 0 Query: 83 SDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHC 187 S+R++WS EDD++R LV GT W+ IAE +A + + GR+GKQC ERWHNHLDP I K W+E+EE +S HRELGN+W+EIAK LPGRTDN VKNHC Sbjct: 36 SNRQIWSAEEDDAVRRLVEKFGTSGWTLIAENLALEYN-NNQGRSGKQCWERWHNHLDPTIRKCEWSEEEEVTLSKQHRELGNRWAEIAKHLPGRTDNQVKNHC 138 The following BLAST results are available for this feature:
BLAST of NO24G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G00620 ID=NO24G00620|Name=NO24G00620|organism=Nannochloropsis oceanica|type=gene|length=2598bpback to top protein sequence of NO24G00620.1 >NO24G00620.1-protein ID=NO24G00620.1-protein|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bpback to top Synonyms
Publications
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