NO24G00620.1, NO24G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00620.1
Unique NameNO24G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1719
Alignment locationchr24:195126..197723 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:195126..197723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO24G00620.1 vs.
Match: EWM21142.1 (myb-like dna-binding domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 238.4 bits (607), Expect = 5.400e-59
Identity = 166/357 (46.50%), Postives = 209/357 (58.54%), Query Frame = 0
Query:   46 SFLFTPSAPAALAVMPRATGAMTSTKRRSSNIRGNPNSDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSRSRGSDNFPSSGLSAQQQQRHTMAPDTLEPDLPFPAAAAASTSGSDSSNRSRSGSSCSFNDTNTITASMLTTLLQKQQGQQNHQQEINMRGVMERELGKGELSNSLVTDPNIMAAAMAAIASATAGANGYSSTTTTTSDRKHAAMAI----GEGGNNSCSSSRSSSSRKKGN--GRCRKAANLAELQRYMTAAADAANEVLKEAGGGE 397
            SF F  S P  L     AT ++  +K R S  R N NSDRRVWSK EDDSIR LVAAHGTRSWS IAEK+A+DKTLSI+GRTGKQCRERWHNHLDPNINKNAWTE+EE+IMS+AHRELGNKWSEIAKRLPGRTDNHVKNH  S   +R+  R +      G S +  Q           ++P+  + ++S++      +  S      +   T + +  T   +       +  ++N+   M  +  + E  ++   D   ++AA+ A  +A    N   +T  + S       A+      G          S   +KGN   RCRKAANLAELQRYMTAAADAANEVL+E G GE
Sbjct:   52 SFPFATSTPT-LGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYS-FMRRNVRRLNREVAELGTSLRGDQE-------ARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLN-LPATANSGSLSAICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGE 398          
The following BLAST results are available for this feature:
BLAST of NO24G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21142.15.400e-5946.50myb-like dna-binding domain containing protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00620NO24G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00620.1NO24G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00620.1.cds1NO24G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00620.1.cds2NO24G00620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00620.1.cds3NO24G00620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00620.1.cds4NO24G00620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00620.1.cds5NO24G00620.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00620.1.cds6NO24G00620.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00620.1 ID=NO24G00620.1|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp
ATGGACGCACTTAGGATGGTTGAGACCTTGCCACCTACCATGGACAGCCA
GAGCTACGGCAGCAGCAACGACAGCAACGGAAGCGCCCCTTTGCCTGCGG
CTGGCCTCTTGGCACCCGCAGCATCGCCCACATTCTCCTTTCTGTTTACG
CCTTCCGCCCCGGCCGCACTGGCAGTCATGCCTCGTGCGACAGGAGCCAT
GACATCAACCAAAAGACGCAGCAGCAATATCCGTGGCAACCCCAACTCGG
ACCGGCGTGTTTGGAGCAAGGCTGAGGATGACTCGATCCGGGCCTTGGTG
GCGGCGCATGGGACCCGCAGCTGGTCAACGATAGCCGAGAAGGTCGCGGC
GGATAAGACCTTGAGCATCTCGGGCCGGACAGGGAAGCAGTGCCGGGAGC
GATGGCACAATCACTTGGATCCGAATATCAACAAGAACGCGTGGACGGAA
AAGGAGGAAAAGATTATGTCAGACGCTCATCGCGAGCTCGGTAACAAGTG
GAGCGAGATCGCCAAGCGCCTGCCAGGCCGCACTGACAATCATGTCAAAA
ATCACTGCAGTAGCACCAGCAGCAAGAGGAGCCGCAGCAGAGGCAGCGAC
AATTTTCCCTCCTCCGGTCTATCCGCGCAGCAACAGCAGCGACATACGAT
GGCGCCAGATACGCTCGAACCCGATCTTCCTTTTCCTGCTGCAGCCGCTG
CATCGACTTCAGGAAGCGATAGCAGCAACAGGAGCCGTAGCGGCAGCAGC
TGCAGCTTCAACGACACCAACACAATTACAGCTTCCATGCTGACAACCTT
GCTTCAGAAGCAGCAAGGGCAGCAGAACCACCAGCAAGAGATCAATATGC
GAGGGGTGATGGAAAGAGAGCTGGGAAAGGGAGAACTAAGCAATTCCCTG
GTGACTGACCCCAACATCATGGCAGCGGCTATGGCAGCGATTGCATCTGC
TACTGCCGGTGCCAATGGTTACAGCAGCACCACCACCACCACCAGCGACC
GCAAGCATGCGGCAATGGCGATTGGGGAGGGAGGGAATAATAGCTGTAGC
AGCAGCAGGAGCAGCAGCAGTCGTAAAAAAGGTAATGGTCGTTGTCGTAA
GGCTGCAAACCTTGCCGAGCTCCAGCGCTATATGACGGCAGCCGCCGATG
CCGCGAACGAGGTCTTGAAGGAAGCAGGGGGGGGAGAGAGGTGGAACGAA
GAAGCTGGAGGCTACCGGGGGGTCAATCTTCCATCCTCCGCGTGGGCCAG
CCAGCGGTCCCTCAACGCCACCAGACGGGCCGCGGCCTCCGCACGGAGCG
GCAAGAATAAAGAAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAGCA
ACAGCTGCAGCTGCAGCACTGGTACCTCAGCAGCAGCAGCAGCAGCAGCC
GCAGCAGCCGCAGCAGCAGCAGCAGCAGCCGCTGCCGCCATACGGGTTGT
CTTTGGAGAGTTCCACCGTAGGAGCGATTGAATCCTTAATGTCCTCTTGC
TCCGGTATTTACCTTGGAGAAGAGCAAGGTATGGGCCACGTCCAGCGGCG
GCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGCAGCAGA
AACAACATGAGCAGCAGGAGCAAGAGGACAAGATGAGTTCTCCATTGATT
ATGAAAATGGGGGGCATGTCCCTACCCCTGCTGTACAGTTCGACGCAATG
CAAGCTTATTTTCCTGTAG
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protein sequence of NO24G00620.1

>NO24G00620.1-protein ID=NO24G00620.1-protein|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MDALRMVETLPPTMDSQSYGSSNDSNGSAPLPAAGLLAPAASPTFSFLFT
PSAPAALAVMPRATGAMTSTKRRSSNIRGNPNSDRRVWSKAEDDSIRALV
AAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTE
KEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSRSRGSD
NFPSSGLSAQQQQRHTMAPDTLEPDLPFPAAAAASTSGSDSSNRSRSGSS
CSFNDTNTITASMLTTLLQKQQGQQNHQQEINMRGVMERELGKGELSNSL
VTDPNIMAAAMAAIASATAGANGYSSTTTTTSDRKHAAMAIGEGGNNSCS
SSRSSSSRKKGNGRCRKAANLAELQRYMTAAADAANEVLKEAGGGERWNE
EAGGYRGVNLPSSAWASQRSLNATRRAAASARSGKNKEATAATAATATAA
TAAAAALVPQQQQQQQPQQPQQQQQQPLPPYGLSLESSTVGAIESLMSSC
SGIYLGEEQGMGHVQRRQEEQEEQEEQEEQEQQKQHEQQEQEDKMSSPLI
MKMGGMSLPLLYSSTQCKLIFL*
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mRNA from alignment at chr24:195126..197723+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00620.1 ID=NO24G00620.1|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp|location=Sequence derived from alignment at chr24:195126..197723+ (Nannochloropsis oceanica)
ATGGACGCACTTAGGATGGTTGAGACCTTGCCACCTACCATGGACAGCCA GAGCTACGGCAGCAGCAACGACAGCAACGGAAGCGCCCCTTTGCCTGCGG CTGGCCTCTTGGCACCCGCAGCATCGCCCACATTCTCCTTTCTGTTTACG CCTTCCGCCCCGGCCGCACTGGCAGTCATGCCTCGTGCGACAGGAGCCAT GACATCAACCAAAAGACGCAGCAGCAATATCCGTGGCAACCCCAACTCGG ACCGGTAAGCAAAAAGGATATTCCGGCGGGCAGCAGCAGCAGCAGCAGGG CAGCCACTCCGCCTCTCGGTGTGGAGTCGGAAAAAGAGAGGCAGCAGACA CCCATGAACTCATGCTCTTTCAATCACATGGGCTCTTTCCCTTACTCCAT TCATGCAGGCGTGTTTGGAGCAAGGCTGAGGATGACTCGATCCGGGCCTT GGTGGCGGCGCATGGGACCCGCAGCTGGTCAACGATAGCCGAGAAGGTCG CGGCGGATAAGAGTAAGTGGATGGGGAGGGGGAGAAGAAGGGAGTGCCAG GGTGTGTGAATGCAATGAATGCTGCATACGTAGACAAAGGAGTCCAAAAA CCATTTTTTGAACGATCCTTCGATTATTCTTTTTCTTCACCAACAGCCTT GAGCATCTCGGGCCGGACAGGGAAGCAGTGCCGGGAGCGATGGCACAATC ACTTGGATCCGAATATCAACAAGAACGCGTGGACGGAAAAGGAGGAAAAG ATTATGTCAGACGCTCATCGGTACGTAGGGCCTGAGGTTGCTTCTTATCT TCACCCTTCTATTTATTTTGTTATGCGTCTACGTGTGTATGCTTGGCTCT TGTGGCTGTTACTTTACCATATTCGTAAGCCTTTCACGAGTCGATACGAA TTCCTTCGTTATCCTTCTCCTCATTTTTCTCTTCCTTCTATCGCAATAGC GAGCTTCGCAACTAATGGACGCAGCTTTCGAGATGCACCGATGACCACAC CTTAATAGCCACCGCTATAACTCTTGTAAGAAGCACTTATACTAACACGC TCTCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCCCTCCCTC CCTCCCTCCCTACCTACCCACCCACCCACCCACCTAATCTCACAGCGAGC TCGGTAACAAGTGGAGCGAGATCGCCAAGCGCCTGCCAGGCCGCACTGAC AATCATGTCAAAAATCACTGGTACTCTTTCATGCGCCGCAACGTCCGTCG ACTCAATCGAGAAGTCGCTGAGTTTGCAACAAGCTTGCCCCCTCCCCCCC GGCAGACAGCAGTAGCACCAGCAGCAAGAGGAGCCGCAGCAGAGGCAGCG ACAATTTTCCCTCCTCCGGTCTATCCGCGCAGCAACAGCAGCGACATACG ATGGCGCCAGATACGCTCGAACCCGATCTTCCTTTTCCTGCTGCAGCCGC TGCATCGACTTCAGGAAGCGATAGCAGCAACAGGAGCCGTAGCGGCAGCA GCTGCAGCTTCAACGACACCAACACAATTACAGCTTCCATGCTGACAACC TTGCTTCAGAAGCAGCAAGGGCAGCAGAACCACCAGCAAGAGATCAATAT GCGAGGGGTGATGGAAAGAGAGCTGGGAAAGGGAGAACTAAGCAATTCCC TGGTGACTGACCCCAACATCATGGCAGCGGCTATGGCAGCGATTGCATCT GCTACTGCCGGTGCCAATGGTTACAGCAGCACCACCACCACCACCAGCGA CCGCAAGCATGCGGCAATGGCGATTGGGGAGGGAGGGAATAATAGCTGTA GCAGCAGCAGGAGCAGCAGCAGTCGTAAAAAAGGTAATGGTCGTTGTCGT AAGGCTGCAAACCTTGCCGAGCTCCAGCGCTATATGACGGCAGCCGCCGA TGCCGCGAACGAGGTCTTGAAGGAAGCAGGGGGGGGAGAGAGGTGGAACG TGAGCGACTGCAGATGTCCAAGATGGCCATAGTGGCGGAGACGGGGGTGA GGCCTGCGGATAGCCCAAGTCAGGCAATAAGTGCCTTGGATAACGATACG AACGAGCTCTTTCGGGATAAACTCAGGAAGAAGCTGGAGGCTACCGGGGG GTCAATCTTCCATCCTCCGCGTGGGCCAGCCAGCGGTCCCTCAACGCCAC CAGACGGGCCGCGGCCTCCGCACGGAGCGGCAAGAATAAAGAAGCAACAG CAGCAACAGCAGCAACAGCAACAGCAGCAACAGCTGCAGCTGCAGCACTG GTACCTCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCCGCAGCAGCAGCA GCAGCAGCCGCTGCCGCCATACGGGTTGTCTTTGGAGAGTTCCACCGTAG GAGCGATTGAATCCTTAATGTCCTCTTGCTCCGGTATTTACCTTGGAGAA GAGCAAGGTATGGGCCACGTCCAGCGGCGGCAGGAGGAGCAGGAGGAGCA GGAGGAGCAGGAGGAGCAGGAGCAGCAGAAACAACATGAGCAGCAGGAGC AAGAGGACAAGATGAGTTCTCCATTGATTATGAAAATGGGGGGCATGTCC CTACCCCTGCTGTACAGTTCGACGCAATGCAAGCTTATTTTCCTGTAG
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Coding sequence (CDS) from alignment at chr24:195126..197723+

>NO24G00620.1 ID=NO24G00620.1|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr24:195126..197723+ (Nannochloropsis oceanica)
ATGGACGCACTTAGGATGGTTGAGACCTTGCCACCTACCATGGACAGCCA
GAGCTACGGCAGCAGCAACGACAGCAACGGAAGCGCCCCTTTGCCTGCGG
CTGGCCTCTTGGCACCCGCAGCATCGCCCACATTCTCCTTTCTGTTTACG
CCTTCCGCCCCGGCCGCACTGGCAGTCATGCCTCGTGCGACAGGAGCCAT
GACATCAACCAAAAGACGCAGCAGCAATATCCGTGGCAACCCCAACTCGG
ACCGGCGTGTTTGGAGCAAGGCTGAGGATGACTCGATCCGGGCCTTGGTG
GCGGCGCATGGGACCCGCAGCTGGTCAACGATAGCCGAGAAGGTCGCGGC
GGATAAGACCTTGAGCATCTCGGGCCGGACAGGGAAGCAGTGCCGGGAGC
GATGGCACAATCACTTGGATCCGAATATCAACAAGAACGCGTGGACGGAA
AAGGAGGAAAAGATTATGTCAGACGCTCATCGCGAGCTCGGTAACAAGTG
GAGCGAGATCGCCAAGCGCCTGCCAGGCCGCACTGACAATCATGTCAAAA
ATCACTGCAGTAGCACCAGCAGCAAGAGGAGCCGCAGCAGAGGCAGCGAC
AATTTTCCCTCCTCCGGTCTATCCGCGCAGCAACAGCAGCGACATACGAT
GGCGCCAGATACGCTCGAACCCGATCTTCCTTTTCCTGCTGCAGCCGCTG
CATCGACTTCAGGAAGCGATAGCAGCAACAGGAGCCGTAGCGGCAGCAGC
TGCAGCTTCAACGACACCAACACAATTACAGCTTCCATGCTGACAACCTT
GCTTCAGAAGCAGCAAGGGCAGCAGAACCACCAGCAAGAGATCAATATGC
GAGGGGTGATGGAAAGAGAGCTGGGAAAGGGAGAACTAAGCAATTCCCTG
GTGACTGACCCCAACATCATGGCAGCGGCTATGGCAGCGATTGCATCTGC
TACTGCCGGTGCCAATGGTTACAGCAGCACCACCACCACCACCAGCGACC
GCAAGCATGCGGCAATGGCGATTGGGGAGGGAGGGAATAATAGCTGTAGC
AGCAGCAGGAGCAGCAGCAGTCGTAAAAAAGGTAATGGTCGTTGTCGTAA
GGCTGCAAACCTTGCCGAGCTCCAGCGCTATATGACGGCAGCCGCCGATG
CCGCGAACGAGGTCTTGAAGGAAGCAGGGGGGGGAGAGAGGTGGAACGAA
GAAGCTGGAGGCTACCGGGGGGTCAATCTTCCATCCTCCGCGTGGGCCAG
CCAGCGGTCCCTCAACGCCACCAGACGGGCCGCGGCCTCCGCACGGAGCG
GCAAGAATAAAGAAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAGCA
ACAGCTGCAGCTGCAGCACTGGTACCTCAGCAGCAGCAGCAGCAGCAGCC
GCAGCAGCCGCAGCAGCAGCAGCAGCAGCCGCTGCCGCCATACGGGTTGT
CTTTGGAGAGTTCCACCGTAGGAGCGATTGAATCCTTAATGTCCTCTTGC
TCCGGTATTTACCTTGGAGAAGAGCAAGGTATGGGCCACGTCCAGCGGCG
GCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGCAGCAGA
AACAACATGAGCAGCAGGAGCAAGAGGACAAGATGAGTTCTCCATTGATT
ATGAAAATGGGGGGCATGTCCCTACCCCTGCTGTACAGTTCGACGCAATG
CAAGCTTATTTTCCTGTAG
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Synonyms
Publications