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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr24 | genome | chr24:195126..197723 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00620.1 vs.
Match: EWM21142.1 (myb-like dna-binding domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 238.4 bits (607), Expect = 5.400e-59 Identity = 166/357 (46.50%), Postives = 209/357 (58.54%), Query Frame = 0
Query: 46 SFLFTPSAPAALAVMPRATGAMTSTKRRSSNIRGNPNSDRRVWSKAEDDSIRALVAAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTEKEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSRSRGSDNFPSSGLSAQQQQRHTMAPDTLEPDLPFPAAAAASTSGSDSSNRSRSGSSCSFNDTNTITASMLTTLLQKQQGQQNHQQEINMRGVMERELGKGELSNSLVTDPNIMAAAMAAIASATAGANGYSSTTTTTSDRKHAAMAI----GEGGNNSCSSSRSSSSRKKGN--GRCRKAANLAELQRYMTAAADAANEVLKEAGGGE 397
SF F S P L AT ++ +K R S R N NSDRRVWSK EDDSIR LVAAHGTRSWS IAEK+A+DKTLSI+GRTGKQCRERWHNHLDPNINKNAWTE+EE+IMS+AHRELGNKWSEIAKRLPGRTDNHVKNH S +R+ R + G S + Q ++P+ + ++S++ + S + T + + T + + ++N+ M + + E ++ D ++AA+ A +A N +T + S A+ G S +KGN RCRKAANLAELQRYMTAAADAANEVL+E G GE
Sbjct: 52 SFPFATSTPT-LGASASATSSVACSKTRPSGNRPNSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHLDPNINKNAWTEEEERIMSEAHRELGNKWSEIAKRLPGRTDNHVKNHWYS-FMRRNVRRLNREVAELGTSLRGDQE-------ARGNIPYSGSESSSSTQVMPGRQHESKIKHKESSNLTFSGASATMFSETSDEAAGNGGKVNLTTSMLAQFFQDEGGHASAHDTKAISAAVEAYVTAVGSLN-LPATANSGSLSAICGQALSTSSAPGNTRMGGKGPKSGGTRKGNRKSRCRKAANLAELQRYMTAAADAANEVLRETGPGE 398
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00620.1 ID=NO24G00620.1|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp ATGGACGCACTTAGGATGGTTGAGACCTTGCCACCTACCATGGACAGCCA GAGCTACGGCAGCAGCAACGACAGCAACGGAAGCGCCCCTTTGCCTGCGG CTGGCCTCTTGGCACCCGCAGCATCGCCCACATTCTCCTTTCTGTTTACG CCTTCCGCCCCGGCCGCACTGGCAGTCATGCCTCGTGCGACAGGAGCCAT GACATCAACCAAAAGACGCAGCAGCAATATCCGTGGCAACCCCAACTCGG ACCGGCGTGTTTGGAGCAAGGCTGAGGATGACTCGATCCGGGCCTTGGTG GCGGCGCATGGGACCCGCAGCTGGTCAACGATAGCCGAGAAGGTCGCGGC GGATAAGACCTTGAGCATCTCGGGCCGGACAGGGAAGCAGTGCCGGGAGC GATGGCACAATCACTTGGATCCGAATATCAACAAGAACGCGTGGACGGAA AAGGAGGAAAAGATTATGTCAGACGCTCATCGCGAGCTCGGTAACAAGTG GAGCGAGATCGCCAAGCGCCTGCCAGGCCGCACTGACAATCATGTCAAAA ATCACTGCAGTAGCACCAGCAGCAAGAGGAGCCGCAGCAGAGGCAGCGAC AATTTTCCCTCCTCCGGTCTATCCGCGCAGCAACAGCAGCGACATACGAT GGCGCCAGATACGCTCGAACCCGATCTTCCTTTTCCTGCTGCAGCCGCTG CATCGACTTCAGGAAGCGATAGCAGCAACAGGAGCCGTAGCGGCAGCAGC TGCAGCTTCAACGACACCAACACAATTACAGCTTCCATGCTGACAACCTT GCTTCAGAAGCAGCAAGGGCAGCAGAACCACCAGCAAGAGATCAATATGC GAGGGGTGATGGAAAGAGAGCTGGGAAAGGGAGAACTAAGCAATTCCCTG GTGACTGACCCCAACATCATGGCAGCGGCTATGGCAGCGATTGCATCTGC TACTGCCGGTGCCAATGGTTACAGCAGCACCACCACCACCACCAGCGACC GCAAGCATGCGGCAATGGCGATTGGGGAGGGAGGGAATAATAGCTGTAGC AGCAGCAGGAGCAGCAGCAGTCGTAAAAAAGGTAATGGTCGTTGTCGTAA GGCTGCAAACCTTGCCGAGCTCCAGCGCTATATGACGGCAGCCGCCGATG CCGCGAACGAGGTCTTGAAGGAAGCAGGGGGGGGAGAGAGGTGGAACGAA GAAGCTGGAGGCTACCGGGGGGTCAATCTTCCATCCTCCGCGTGGGCCAG CCAGCGGTCCCTCAACGCCACCAGACGGGCCGCGGCCTCCGCACGGAGCG GCAAGAATAAAGAAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAGCA ACAGCTGCAGCTGCAGCACTGGTACCTCAGCAGCAGCAGCAGCAGCAGCC GCAGCAGCCGCAGCAGCAGCAGCAGCAGCCGCTGCCGCCATACGGGTTGT CTTTGGAGAGTTCCACCGTAGGAGCGATTGAATCCTTAATGTCCTCTTGC TCCGGTATTTACCTTGGAGAAGAGCAAGGTATGGGCCACGTCCAGCGGCG GCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGCAGCAGA AACAACATGAGCAGCAGGAGCAAGAGGACAAGATGAGTTCTCCATTGATT ATGAAAATGGGGGGCATGTCCCTACCCCTGCTGTACAGTTCGACGCAATG CAAGCTTATTTTCCTGTAG back to topprotein sequence of NO24G00620.1 >NO24G00620.1-protein ID=NO24G00620.1-protein|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp MDALRMVETLPPTMDSQSYGSSNDSNGSAPLPAAGLLAPAASPTFSFLFT PSAPAALAVMPRATGAMTSTKRRSSNIRGNPNSDRRVWSKAEDDSIRALV AAHGTRSWSTIAEKVAADKTLSISGRTGKQCRERWHNHLDPNINKNAWTE KEEKIMSDAHRELGNKWSEIAKRLPGRTDNHVKNHCSSTSSKRSRSRGSD NFPSSGLSAQQQQRHTMAPDTLEPDLPFPAAAAASTSGSDSSNRSRSGSS CSFNDTNTITASMLTTLLQKQQGQQNHQQEINMRGVMERELGKGELSNSL VTDPNIMAAAMAAIASATAGANGYSSTTTTTSDRKHAAMAIGEGGNNSCS SSRSSSSRKKGNGRCRKAANLAELQRYMTAAADAANEVLKEAGGGERWNE EAGGYRGVNLPSSAWASQRSLNATRRAAASARSGKNKEATAATAATATAA TAAAAALVPQQQQQQQPQQPQQQQQQPLPPYGLSLESSTVGAIESLMSSC SGIYLGEEQGMGHVQRRQEEQEEQEEQEEQEQQKQHEQQEQEDKMSSPLI MKMGGMSLPLLYSSTQCKLIFL* back to topmRNA from alignment at chr24:195126..197723+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00620.1 ID=NO24G00620.1|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp|location=Sequence derived from alignment at chr24:195126..197723+ (Nannochloropsis oceanica) ATGGACGCACTTAGGATGGTTGAGACCTTGCCACCTACCATGGACAGCCA
GAGCTACGGCAGCAGCAACGACAGCAACGGAAGCGCCCCTTTGCCTGCGG
CTGGCCTCTTGGCACCCGCAGCATCGCCCACATTCTCCTTTCTGTTTACG
CCTTCCGCCCCGGCCGCACTGGCAGTCATGCCTCGTGCGACAGGAGCCAT
GACATCAACCAAAAGACGCAGCAGCAATATCCGTGGCAACCCCAACTCGG
ACCGGTAAGCAAAAAGGATATTCCGGCGGGCAGCAGCAGCAGCAGCAGGG
CAGCCACTCCGCCTCTCGGTGTGGAGTCGGAAAAAGAGAGGCAGCAGACA
CCCATGAACTCATGCTCTTTCAATCACATGGGCTCTTTCCCTTACTCCAT
TCATGCAGGCGTGTTTGGAGCAAGGCTGAGGATGACTCGATCCGGGCCTT
GGTGGCGGCGCATGGGACCCGCAGCTGGTCAACGATAGCCGAGAAGGTCG
CGGCGGATAAGAGTAAGTGGATGGGGAGGGGGAGAAGAAGGGAGTGCCAG
GGTGTGTGAATGCAATGAATGCTGCATACGTAGACAAAGGAGTCCAAAAA
CCATTTTTTGAACGATCCTTCGATTATTCTTTTTCTTCACCAACAGCCTT
GAGCATCTCGGGCCGGACAGGGAAGCAGTGCCGGGAGCGATGGCACAATC
ACTTGGATCCGAATATCAACAAGAACGCGTGGACGGAAAAGGAGGAAAAG
ATTATGTCAGACGCTCATCGGTACGTAGGGCCTGAGGTTGCTTCTTATCT
TCACCCTTCTATTTATTTTGTTATGCGTCTACGTGTGTATGCTTGGCTCT
TGTGGCTGTTACTTTACCATATTCGTAAGCCTTTCACGAGTCGATACGAA
TTCCTTCGTTATCCTTCTCCTCATTTTTCTCTTCCTTCTATCGCAATAGC
GAGCTTCGCAACTAATGGACGCAGCTTTCGAGATGCACCGATGACCACAC
CTTAATAGCCACCGCTATAACTCTTGTAAGAAGCACTTATACTAACACGC
TCTCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCCCTCCCTC
CCTCCCTCCCTACCTACCCACCCACCCACCCACCTAATCTCACAGCGAGC
TCGGTAACAAGTGGAGCGAGATCGCCAAGCGCCTGCCAGGCCGCACTGAC
AATCATGTCAAAAATCACTGGTACTCTTTCATGCGCCGCAACGTCCGTCG
ACTCAATCGAGAAGTCGCTGAGTTTGCAACAAGCTTGCCCCCTCCCCCCC
GGCAGACAGCAGTAGCACCAGCAGCAAGAGGAGCCGCAGCAGAGGCAGCG
ACAATTTTCCCTCCTCCGGTCTATCCGCGCAGCAACAGCAGCGACATACG
ATGGCGCCAGATACGCTCGAACCCGATCTTCCTTTTCCTGCTGCAGCCGC
TGCATCGACTTCAGGAAGCGATAGCAGCAACAGGAGCCGTAGCGGCAGCA
GCTGCAGCTTCAACGACACCAACACAATTACAGCTTCCATGCTGACAACC
TTGCTTCAGAAGCAGCAAGGGCAGCAGAACCACCAGCAAGAGATCAATAT
GCGAGGGGTGATGGAAAGAGAGCTGGGAAAGGGAGAACTAAGCAATTCCC
TGGTGACTGACCCCAACATCATGGCAGCGGCTATGGCAGCGATTGCATCT
GCTACTGCCGGTGCCAATGGTTACAGCAGCACCACCACCACCACCAGCGA
CCGCAAGCATGCGGCAATGGCGATTGGGGAGGGAGGGAATAATAGCTGTA
GCAGCAGCAGGAGCAGCAGCAGTCGTAAAAAAGGTAATGGTCGTTGTCGT
AAGGCTGCAAACCTTGCCGAGCTCCAGCGCTATATGACGGCAGCCGCCGA
TGCCGCGAACGAGGTCTTGAAGGAAGCAGGGGGGGGAGAGAGGTGGAACG
TGAGCGACTGCAGATGTCCAAGATGGCCATAGTGGCGGAGACGGGGGTGA
GGCCTGCGGATAGCCCAAGTCAGGCAATAAGTGCCTTGGATAACGATACG
AACGAGCTCTTTCGGGATAAACTCAGGAAGAAGCTGGAGGCTACCGGGGG
GTCAATCTTCCATCCTCCGCGTGGGCCAGCCAGCGGTCCCTCAACGCCAC
CAGACGGGCCGCGGCCTCCGCACGGAGCGGCAAGAATAAAGAAGCAACAG
CAGCAACAGCAGCAACAGCAACAGCAGCAACAGCTGCAGCTGCAGCACTG
GTACCTCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCCGCAGCAGCAGCA
GCAGCAGCCGCTGCCGCCATACGGGTTGTCTTTGGAGAGTTCCACCGTAG
GAGCGATTGAATCCTTAATGTCCTCTTGCTCCGGTATTTACCTTGGAGAA
GAGCAAGGTATGGGCCACGTCCAGCGGCGGCAGGAGGAGCAGGAGGAGCA
GGAGGAGCAGGAGGAGCAGGAGCAGCAGAAACAACATGAGCAGCAGGAGC
AAGAGGACAAGATGAGTTCTCCATTGATTATGAAAATGGGGGGCATGTCC
CTACCCCTGCTGTACAGTTCGACGCAATGCAAGCTTATTTTCCTGTAG back to topCoding sequence (CDS) from alignment at chr24:195126..197723+ >NO24G00620.1 ID=NO24G00620.1|Name=NO24G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr24:195126..197723+ (Nannochloropsis oceanica) ATGGACGCACTTAGGATGGTTGAGACCTTGCCACCTACCATGGACAGCCA GAGCTACGGCAGCAGCAACGACAGCAACGGAAGCGCCCCTTTGCCTGCGG CTGGCCTCTTGGCACCCGCAGCATCGCCCACATTCTCCTTTCTGTTTACG CCTTCCGCCCCGGCCGCACTGGCAGTCATGCCTCGTGCGACAGGAGCCAT GACATCAACCAAAAGACGCAGCAGCAATATCCGTGGCAACCCCAACTCGG ACCGGCGTGTTTGGAGCAAGGCTGAGGATGACTCGATCCGGGCCTTGGTG GCGGCGCATGGGACCCGCAGCTGGTCAACGATAGCCGAGAAGGTCGCGGC GGATAAGACCTTGAGCATCTCGGGCCGGACAGGGAAGCAGTGCCGGGAGC GATGGCACAATCACTTGGATCCGAATATCAACAAGAACGCGTGGACGGAA AAGGAGGAAAAGATTATGTCAGACGCTCATCGCGAGCTCGGTAACAAGTG GAGCGAGATCGCCAAGCGCCTGCCAGGCCGCACTGACAATCATGTCAAAA ATCACTGCAGTAGCACCAGCAGCAAGAGGAGCCGCAGCAGAGGCAGCGAC AATTTTCCCTCCTCCGGTCTATCCGCGCAGCAACAGCAGCGACATACGAT GGCGCCAGATACGCTCGAACCCGATCTTCCTTTTCCTGCTGCAGCCGCTG CATCGACTTCAGGAAGCGATAGCAGCAACAGGAGCCGTAGCGGCAGCAGC TGCAGCTTCAACGACACCAACACAATTACAGCTTCCATGCTGACAACCTT GCTTCAGAAGCAGCAAGGGCAGCAGAACCACCAGCAAGAGATCAATATGC GAGGGGTGATGGAAAGAGAGCTGGGAAAGGGAGAACTAAGCAATTCCCTG GTGACTGACCCCAACATCATGGCAGCGGCTATGGCAGCGATTGCATCTGC TACTGCCGGTGCCAATGGTTACAGCAGCACCACCACCACCACCAGCGACC GCAAGCATGCGGCAATGGCGATTGGGGAGGGAGGGAATAATAGCTGTAGC AGCAGCAGGAGCAGCAGCAGTCGTAAAAAAGGTAATGGTCGTTGTCGTAA GGCTGCAAACCTTGCCGAGCTCCAGCGCTATATGACGGCAGCCGCCGATG CCGCGAACGAGGTCTTGAAGGAAGCAGGGGGGGGAGAGAGGTGGAACGAA GAAGCTGGAGGCTACCGGGGGGTCAATCTTCCATCCTCCGCGTGGGCCAG CCAGCGGTCCCTCAACGCCACCAGACGGGCCGCGGCCTCCGCACGGAGCG GCAAGAATAAAGAAGCAACAGCAGCAACAGCAGCAACAGCAACAGCAGCA ACAGCTGCAGCTGCAGCACTGGTACCTCAGCAGCAGCAGCAGCAGCAGCC GCAGCAGCCGCAGCAGCAGCAGCAGCAGCCGCTGCCGCCATACGGGTTGT CTTTGGAGAGTTCCACCGTAGGAGCGATTGAATCCTTAATGTCCTCTTGC TCCGGTATTTACCTTGGAGAAGAGCAAGGTATGGGCCACGTCCAGCGGCG GCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGGAGCAGGAGCAGCAGA AACAACATGAGCAGCAGGAGCAAGAGGACAAGATGAGTTCTCCATTGATT ATGAAAATGGGGGGCATGTCCCTACCCCTGCTGTACAGTTCGACGCAATG CAAGCTTATTTTCCTGTAG back to top
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