NO24G00200, NO24G00200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G00200 vs. NCBI_GenBank
Match: CBJ28305.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 107.1 bits (266), Expect = 5.400e-20 Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 0 Query: 25 SNRARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKLA 121 S R++ GL+AGKD+ FGN +S S++K RR +KPN Q+K L+S+ L++ I F+LTT LR VD+AGG+D YLL+TPD L+S G + KR+IE LA Sbjct: 28 SKRSQIGLYAGKDIGFGNTISFSHKKNRRTWKPNVQKKALYSETLDEWIKFSLTTHALRCVDRAGGIDRYLLKTPDEWLNSVQGSKAKRKIEEALA 123
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_005832627.1 (hypothetical protein GUITHDRAFT_71217, partial [Guillardia theta CCMP2712] >EKX45647.1 hypothetical protein GUITHDRAFT_71217, partial [Guillardia theta CCMP2712]) HSP 1 Score: 105.5 bits (262), Expect = 1.600e-19 Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 0 Query: 27 RARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQI 116 RA RGLF GK + FGN VS S RKTRR + PN Q+KRLWSD + MI +TT+ L+ +DK GGLDNYL+ T D KLDS G+++K+ + Sbjct: 1 RADRGLFGGKKIGFGNNVSFSERKTRRTWMPNVQQKRLWSDCFDTMIKLRITTSVLKTIDKHGGLDNYLVNTADVKLDSALGVKLKQMV 89
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_022838838.1 (Ribosomal protein L28 [Ostreococcus tauri] >CEF97699.1 Ribosomal protein L28 [Ostreococcus tauri]) HSP 1 Score: 105.1 bits (261), Expect = 2.100e-19 Identity = 57/111 (51.35%), Postives = 72/111 (64.86%), Query Frame = 0 Query: 14 SAAFARMGRPSSNRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKLARAE 124 SAA + R +ARRG+FAGK + FGNMVS KTRR + PN Q+KR++S+ LE MIP +TT LR +DKAGGLD Y+L+T D KL SE I +K Q+ L E Sbjct: 7 SAAKRALARVVQGKARRGVFAGKHIKFGNMVSEDGGNKTRRRWSPNVQKKRVYSELLERMIPMRVTTKALRCMDKAGGLDEYILKTRDDKLASEFAIALKAQLRAALRAKE 117
BLAST of NO24G00200 vs. NCBI_GenBank
Match: OUS49608.1 (ribosomal L28 family-domain-containing protein [Ostreococcus tauri]) HSP 1 Score: 105.1 bits (261), Expect = 2.100e-19 Identity = 57/111 (51.35%), Postives = 72/111 (64.86%), Query Frame = 0 Query: 14 SAAFARMGRPSSNRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKLARAE 124 SAA + R +ARRG+FAGK + FGNMVS KTRR + PN Q+KR++S+ LE MIP +TT LR +DKAGGLD Y+L+T D KL SE I +K Q+ L E Sbjct: 7 SAAKRALARVVQGKARRGVFAGKHIKFGNMVSEDGGNKTRRRWSPNVQKKRVYSELLERMIPMRVTTKALRCMDKAGGLDEYILKTRDDKLASEFAIALKAQLRAALRAKE 117
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_005651438.1 (hypothetical protein COCSUDRAFT_27303 [Coccomyxa subellipsoidea C-169] >EIE26894.1 hypothetical protein COCSUDRAFT_27303 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 102.1 bits (253), Expect = 1.700e-18 Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 0 Query: 13 LSAAFARMGRPSSNRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKLA 121 ++ A + R R+RRGLFAGK VL GN VS +TRR++KPN QRK L+S+AL+ M+ N+TT +R +DK GGLD YLL T D KL S+ G +K+QI+ LA Sbjct: 1 MAGAAVQAARTLMKRSRRGLFAGKTVLSGNNVSEDGGNRTRRIWKPNVQRKALYSEALDRMVRLNVTTAAMRTIDKYGGLDAYLLGTTDEKLASDVGSELKQQIKATLA 109
BLAST of NO24G00200 vs. NCBI_GenBank
Match: OAO12020.1 (Ribosomal L28 family [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 100.1 bits (248), Expect = 6.600e-18 Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 0 Query: 13 LSAAFARMGRPSSNRARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERK 119 ++ A + R + RARRGLF LFGN VSHS RKTRR + PN KRL+S L+D + +T+ TLR +DKAGGLDNY+L T D L+S+ ++++ +I +K Sbjct: 38 MNTVIADVTRSTMKRARRGLFGNTGKLFGNNVSHSERKTRRTWDPNVLHKRLYSATLDDFVYLRVTSNTLRCIDKAGGLDNYVLYTKDKDLNSDVALKLRERILQK 143
BLAST of NO24G00200 vs. NCBI_GenBank
Match: CCA26012.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 99.8 bits (247), Expect = 8.600e-18 Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 0 Query: 25 SNRARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKL 120 S RARRGLFAG+D FGN VSHS R+TRR +K N Q K L+S+AL++MI N+TT TLR +DK GGLDNYL D + G++ K +I L Sbjct: 27 SGRARRGLFAGRDKGFGNNVSHSKRRTRRSWKVNHQWKHLYSEALDEMIGLNVTTHTLRCIDKIGGLDNYLQSISDEQELGVKGLKAKNRIVEAL 121
BLAST of NO24G00200 vs. NCBI_GenBank
Match: NP_001276229.1 (uncharacterized protein LOC102663308 [Glycine max] >ACU23921.1 unknown [Glycine max] >KHN05719.1 50S ribosomal protein L28 [Glycine soja] >KRH24925.1 hypothetical protein GLYMA_12G071700 [Glycine max] >KRH24926.1 hypothetical protein GLYMA_12G071700 [Glycine max]) HSP 1 Score: 99.0 bits (245), Expect = 1.500e-17 Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 0 Query: 26 NRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIER 118 NRA+RGLFAGK + FGN VS K+RR +KPN Q KRL+S L+ + +TT LR +DKAGG+D YLL+TP HK+D+E GI K +IE+ Sbjct: 41 NRAKRGLFAGKHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHVRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGILWKAKIEK 133
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_006450181.1 (54S ribosomal protein L24, mitochondrial [Citrus clementina] >XP_006483558.1 PREDICTED: 54S ribosomal protein L24, mitochondrial [Citrus sinensis] >ESR63421.1 hypothetical protein CICLE_v10009422mg [Citrus clementina] >KDO67302.1 hypothetical protein CISIN_1g039022mg [Citrus sinensis] >GAY44469.1 hypothetical protein CUMW_082310 [Citrus unshiu]) HSP 1 Score: 99.0 bits (245), Expect = 1.500e-17 Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 0 Query: 26 NRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIER 118 NRA+RGLFAGK + FGN VS KTRR +KPN Q KRL+S ++ I +TT LR +DKAGG+D YLL+TP HK+D+E G+ K +IE+ Sbjct: 42 NRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKTKIEK 134
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_006591021.1 (PREDICTED: uncharacterized protein LOC100791613 [Glycine max] >XP_006591022.1 PREDICTED: uncharacterized protein LOC100791613 [Glycine max] >KHN22045.1 50S ribosomal protein L28 [Glycine soja] >KRG89034.1 hypothetical protein GLYMA_U020500 [Glycine max] >KRG89035.1 hypothetical protein GLYMA_U020500 [Glycine max]) HSP 1 Score: 98.6 bits (244), Expect = 1.900e-17 Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 0 Query: 26 NRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIER 118 NRA+RGLFAGK + FGN VS K+RR +KPN Q KRL+S L+ + +TT LR +DKAGG+D YL++TP HK+D+E GI K +IE+ Sbjct: 41 NRAKRGLFAGKHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHVRVKITTHALRCIDKAGGIDEYLMKTPYHKMDTEMGILWKAKIEK 133 The following BLAST results are available for this feature:
BLAST of NO24G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G00200 ID=NO24G00200|Name=NO24G00200|organism=Nannochloropsis oceanica|type=gene|length=1952bpback to top protein sequence of NO24G00200.3 >NO24G00200.3-protein ID=NO24G00200.3-protein|Name=NO24G00200.3|organism=Nannochloropsis oceanica|type=polypeptide|length=157bpback to top protein sequence of NO24G00200.2 >NO24G00200.2-protein ID=NO24G00200.2-protein|Name=NO24G00200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=136bpback to top protein sequence of NO24G00200.1 >NO24G00200.1-protein ID=NO24G00200.1-protein|Name=NO24G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bpback to top Synonyms
Publications
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