NO24G00200, NO24G00200 (gene) Nannochloropsis oceanica

Overview
NameNO24G00200
Unique NameNO24G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1952
Alignment locationchr24:62314..64265 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal L28 family
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:62314..64265 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR034704L28p-like
IPR026569Ribo_L28/L24
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
BLAST of NO24G00200 vs. NCBI_GenBank
Match: CBJ28305.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.1 bits (266), Expect = 5.400e-20
Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 0
Query:   25 SNRARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKLA 121
            S R++ GL+AGKD+ FGN +S S++K RR +KPN Q+K L+S+ L++ I F+LTT  LR VD+AGG+D YLL+TPD  L+S  G + KR+IE  LA
Sbjct:   28 SKRSQIGLYAGKDIGFGNTISFSHKKNRRTWKPNVQKKALYSETLDEWIKFSLTTHALRCVDRAGGIDRYLLKTPDEWLNSVQGSKAKRKIEEALA 123          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_005832627.1 (hypothetical protein GUITHDRAFT_71217, partial [Guillardia theta CCMP2712] >EKX45647.1 hypothetical protein GUITHDRAFT_71217, partial [Guillardia theta CCMP2712])

HSP 1 Score: 105.5 bits (262), Expect = 1.600e-19
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 0
Query:   27 RARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQI 116
            RA RGLF GK + FGN VS S RKTRR + PN Q+KRLWSD  + MI   +TT+ L+ +DK GGLDNYL+ T D KLDS  G+++K+ +
Sbjct:    1 RADRGLFGGKKIGFGNNVSFSERKTRRTWMPNVQQKRLWSDCFDTMIKLRITTSVLKTIDKHGGLDNYLVNTADVKLDSALGVKLKQMV 89          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_022838838.1 (Ribosomal protein L28 [Ostreococcus tauri] >CEF97699.1 Ribosomal protein L28 [Ostreococcus tauri])

HSP 1 Score: 105.1 bits (261), Expect = 2.100e-19
Identity = 57/111 (51.35%), Postives = 72/111 (64.86%), Query Frame = 0
Query:   14 SAAFARMGRPSSNRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKLARAE 124
            SAA   + R    +ARRG+FAGK + FGNMVS     KTRR + PN Q+KR++S+ LE MIP  +TT  LR +DKAGGLD Y+L+T D KL SE  I +K Q+   L   E
Sbjct:    7 SAAKRALARVVQGKARRGVFAGKHIKFGNMVSEDGGNKTRRRWSPNVQKKRVYSELLERMIPMRVTTKALRCMDKAGGLDEYILKTRDDKLASEFAIALKAQLRAALRAKE 117          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: OUS49608.1 (ribosomal L28 family-domain-containing protein [Ostreococcus tauri])

HSP 1 Score: 105.1 bits (261), Expect = 2.100e-19
Identity = 57/111 (51.35%), Postives = 72/111 (64.86%), Query Frame = 0
Query:   14 SAAFARMGRPSSNRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKLARAE 124
            SAA   + R    +ARRG+FAGK + FGNMVS     KTRR + PN Q+KR++S+ LE MIP  +TT  LR +DKAGGLD Y+L+T D KL SE  I +K Q+   L   E
Sbjct:    7 SAAKRALARVVQGKARRGVFAGKHIKFGNMVSEDGGNKTRRRWSPNVQKKRVYSELLERMIPMRVTTKALRCMDKAGGLDEYILKTRDDKLASEFAIALKAQLRAALRAKE 117          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_005651438.1 (hypothetical protein COCSUDRAFT_27303 [Coccomyxa subellipsoidea C-169] >EIE26894.1 hypothetical protein COCSUDRAFT_27303 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 102.1 bits (253), Expect = 1.700e-18
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 0
Query:   13 LSAAFARMGRPSSNRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKLA 121
            ++ A  +  R    R+RRGLFAGK VL GN VS     +TRR++KPN QRK L+S+AL+ M+  N+TT  +R +DK GGLD YLL T D KL S+ G  +K+QI+  LA
Sbjct:    1 MAGAAVQAARTLMKRSRRGLFAGKTVLSGNNVSEDGGNRTRRIWKPNVQRKALYSEALDRMVRLNVTTAAMRTIDKYGGLDAYLLGTTDEKLASDVGSELKQQIKATLA 109          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: OAO12020.1 (Ribosomal L28 family [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 100.1 bits (248), Expect = 6.600e-18
Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 0
Query:   13 LSAAFARMGRPSSNRARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERK 119
            ++   A + R +  RARRGLF     LFGN VSHS RKTRR + PN   KRL+S  L+D +   +T+ TLR +DKAGGLDNY+L T D  L+S+  ++++ +I +K
Sbjct:   38 MNTVIADVTRSTMKRARRGLFGNTGKLFGNNVSHSERKTRRTWDPNVLHKRLYSATLDDFVYLRVTSNTLRCIDKAGGLDNYVLYTKDKDLNSDVALKLRERILQK 143          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: CCA26012.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 99.8 bits (247), Expect = 8.600e-18
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 0
Query:   25 SNRARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIERKL 120
            S RARRGLFAG+D  FGN VSHS R+TRR +K N Q K L+S+AL++MI  N+TT TLR +DK GGLDNYL    D +     G++ K +I   L
Sbjct:   27 SGRARRGLFAGRDKGFGNNVSHSKRRTRRSWKVNHQWKHLYSEALDEMIGLNVTTHTLRCIDKIGGLDNYLQSISDEQELGVKGLKAKNRIVEAL 121          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: NP_001276229.1 (uncharacterized protein LOC102663308 [Glycine max] >ACU23921.1 unknown [Glycine max] >KHN05719.1 50S ribosomal protein L28 [Glycine soja] >KRH24925.1 hypothetical protein GLYMA_12G071700 [Glycine max] >KRH24926.1 hypothetical protein GLYMA_12G071700 [Glycine max])

HSP 1 Score: 99.0 bits (245), Expect = 1.500e-17
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 0
Query:   26 NRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIER 118
            NRA+RGLFAGK + FGN VS     K+RR +KPN Q KRL+S  L+  +   +TT  LR +DKAGG+D YLL+TP HK+D+E GI  K +IE+
Sbjct:   41 NRAKRGLFAGKHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHVRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGILWKAKIEK 133          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_006450181.1 (54S ribosomal protein L24, mitochondrial [Citrus clementina] >XP_006483558.1 PREDICTED: 54S ribosomal protein L24, mitochondrial [Citrus sinensis] >ESR63421.1 hypothetical protein CICLE_v10009422mg [Citrus clementina] >KDO67302.1 hypothetical protein CISIN_1g039022mg [Citrus sinensis] >GAY44469.1 hypothetical protein CUMW_082310 [Citrus unshiu])

HSP 1 Score: 99.0 bits (245), Expect = 1.500e-17
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 0
Query:   26 NRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIER 118
            NRA+RGLFAGK + FGN VS     KTRR +KPN Q KRL+S  ++  I   +TT  LR +DKAGG+D YLL+TP HK+D+E G+  K +IE+
Sbjct:   42 NRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKTKIEK 134          
BLAST of NO24G00200 vs. NCBI_GenBank
Match: XP_006591021.1 (PREDICTED: uncharacterized protein LOC100791613 [Glycine max] >XP_006591022.1 PREDICTED: uncharacterized protein LOC100791613 [Glycine max] >KHN22045.1 50S ribosomal protein L28 [Glycine soja] >KRG89034.1 hypothetical protein GLYMA_U020500 [Glycine max] >KRG89035.1 hypothetical protein GLYMA_U020500 [Glycine max])

HSP 1 Score: 98.6 bits (244), Expect = 1.900e-17
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 0
Query:   26 NRARRGLFAGKDVLFGNMVSH-SNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQIER 118
            NRA+RGLFAGK + FGN VS     K+RR +KPN Q KRL+S  L+  +   +TT  LR +DKAGG+D YL++TP HK+D+E GI  K +IE+
Sbjct:   41 NRAKRGLFAGKHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHVRVKITTHALRCIDKAGGIDEYLMKTPYHKMDTEMGILWKAKIEK 133          
The following BLAST results are available for this feature:
BLAST of NO24G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ28305.15.400e-2054.17conserved unknown protein [Ectocarpus siliculosus][more]
XP_005832627.11.600e-1956.18hypothetical protein GUITHDRAFT_71217, partial [Gu... [more]
XP_022838838.12.100e-1951.35Ribosomal protein L28 [Ostreococcus tauri] >CEF976... [more]
OUS49608.12.100e-1951.35ribosomal L28 family-domain-containing protein [Os... [more]
XP_005651438.11.700e-1850.46hypothetical protein COCSUDRAFT_27303 [Coccomyxa s... [more]
OAO12020.16.600e-1847.17Ribosomal L28 family [Blastocystis sp. ATCC 50177/... [more]
CCA26012.18.600e-1854.74conserved hypothetical protein [Albugo laibachii N... [more]
NP_001276229.11.500e-1754.84uncharacterized protein LOC102663308 [Glycine max]... [more]
XP_006450181.11.500e-1754.8454S ribosomal protein L24, mitochondrial [Citrus c... [more]
XP_006591021.11.900e-1753.76PREDICTED: uncharacterized protein LOC100791613 [G... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR123ngnoR123Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00200.3NO24G00200.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00200.2NO24G00200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO24G00200.1NO24G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00200.3NO24G00200.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00200.2NO24G00200.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO24G00200.1NO24G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00200 ID=NO24G00200|Name=NO24G00200|organism=Nannochloropsis oceanica|type=gene|length=1952bp
GGGGGGGGGGCAGAGAATGTGGGTAAGCAAGACTTTGAGCGATCGCTTCG
AGACAGACTTCTTGATGTCAAGTACGACTAGATCACACATACGATGACAC
CAACGCTCCCACACACACGTAGTTTACACAGACGCAGTGCACACACTGCG
CGCCACGAGGCAAAGAGGCGGCAGCAGAGACTGCAGAGCAGGTGAACTGC
TGGAGTGCATCCATCTCTCCTCCTCTCCTACAACTCTCATCGTATCATCG
ATCAACCAACCGCTACACGTCCCCTTCATTAGAAGAAGCGGACGCAGAGC
AATCAAAGCCACTGACATAGACACACAAAAACTCATTGGCAACCTGATTT
CGGAAAGAGAGAAGTATGGTGAATCTACTGAGGCCTTTGGCACTGGTGGA
ACTAAGCGCAGCTTTTGCGAGGATGGGGCGACCGTCCTCGAATCGGTAAG
AGGAGGACGACGAGGAGAGGGAGGGAGAGGAAGTGGAGGAGGAGGACGAG
GAGAGGAAGGGAAGAACGTGAGGTATGCTTACGATGGTAGTTTTGATGGT
GGATGGATAGGATTTGAAGAAGGGTGCACAACGAGGCAGAAGAGGAGGAA
GAAGACCGTGCTGGTGTTGAAATTGTATTGGTATAGCATGTCTGACAACA
TCCTACTCATCACTCCCTCACTCCCTTCCTCCCTCCCCCTCAGGGCCCGT
CGAGGCTTGTTTGCAGGGAAAGACGTACTGTTTGGGAACATGGTCAGTCA
CTCAAACCGGAAgtaagtgcgcgggggcaagggagggaggaaaggaaggg
aggaagggagggagggagagaaggagagaggaaagagggagtatgtagta
cttagcattaaaagcctccaatttatgagagcgagcagaagcatgaatag
aggagaatgaaaacaagtcatctgtctttttatacgtttcttcctcgtct
tctttccatggaatcgtacttctatccctcgaaggctcacttctccctct
gcccccctccctcccccctccctccccccctccttctagGACTAGGCGAA
TGTTCAAACCCAACTCGCAACGGAAACGATTGTGGAGCGATGCCTTGGAG
gtaaggaaggaagggagggagggagggagggaaggtctgcggagggacaa
tttttcttgtgtatgtgtgtgtgcaataacctttcgatcggctcatccac
ccagcttccctccctcccttcctccctcccaatagGACATGATCCCCTTT
AACCTGACCACGACGACTCTACGGATGGTGGACAAAGCGGGAGgtgcgtc
gagggatggagggaggaagggaggaagggggagaaggtggaaggaaattg
gattagagagatacgactctttccccaccaactggaagagtggctcacac
accttccctcccttcctccctccctccctccctccagGCCTCGATAACTA
TCTCCTCCAAACCCCGGACCATAAGCTTGACTCGGAGAGCGGCATCCGGg
tacgtgctggcaagctctccctgccttcctccctccctccctctcttcct
ccttctgcattcggctcctccctttgacccccactccctgtctgcctttc
actcctatcctgggcgagtagcgtgtgtaaaaagcaacctacatcgatcc
tcatctcctcctccctccttccctccccctcaccaacgacagATCAAGCG
GCAAATCGAGAGAAAGCTGGCTCGCGCCGAGCAGCTCCAACAACAACAAG
CACCATCAGCCCCACCATCCCCAGCAGCAGGAGGAGGAGGAGGAGGGCTA
GGCTTGGGTATGAAGGGGCTAGGAGACATGTTGGGAGGAGGAGGGGGAGG
AATGTAGACAGGCGAAAGAGAGAGAGGGGATGGAAAGAAGAAAGATTCGT
TTGGGCGAACGTGATTAAAGAATCGAGGACGACAAATGTGCCTGTTCTGA
TT
back to top

protein sequence of NO24G00200.3

>NO24G00200.3-protein ID=NO24G00200.3-protein|Name=NO24G00200.3|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MSDNILLITPSLPSSLPLRARRGLFAGKDVLFGNMVSHSNRKTRRMFKPN
SQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESG
IRIKRQIERKLARAEQLQQQQAPSAPPSPAAGGGGGGLGLGMKGLGDMLG
GGGGGM*
back to top

protein sequence of NO24G00200.2

>NO24G00200.2-protein ID=NO24G00200.2-protein|Name=NO24G00200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MVNLLRPLALVELSAAFARMGRPSSNRARRGLFAGKDVLFGNMVSHSNRK
TRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPD
HKLDSESGIRVRAGKLSLPSSLPPSLPPSAFGSSL*
back to top

protein sequence of NO24G00200.1

>NO24G00200.1-protein ID=NO24G00200.1-protein|Name=NO24G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MVNLLRPLALVELSAAFARMGRPSSNRARRGLFAGKDVLFGNMVSHSNRK
TRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPD
HKLDSESGIRIKRQIERKLARAEQLQQQQAPSAPPSPAAGGGGGGLGLGM
KGLGDMLGGGGGGM*
back to top
Synonyms
Publications