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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:62314..64265 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00200.3 vs.
Match: XP_005832627.1 (hypothetical protein GUITHDRAFT_71217, partial [Guillardia theta CCMP2712]; EKX45647.1 hypothetical protein GUITHDRAFT_71217, partial [Guillardia theta CCMP2712]) HSP 1 Score: 106.3 bits (264), Expect = 8.800e-20 Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 0
Query: 19 RARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRIKRQI 108
RA RGLF GK + FGN VS S RKTRR + PN Q+KRLWSD + MI +TT+ L+ +DK GGLDNYL+ T D KLDS G+++K+ +
Sbjct: 1 RADRGLFGGKKIGFGNNVSFSERKTRRTWMPNVQQKRLWSDCFDTMIKLRITTSVLKTIDKHGGLDNYLVNTADVKLDSALGVKLKQMV 89
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00200.3 ID=NO24G00200.3|Name=NO24G00200.3|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
GGGGGGGGGGCAGAGAATGTGGGTAAGCAAGACTTTGAGCGATCGCTTCG
AGACAGACTTCTTGATGTCAAGTACGACTAGATCACACATACGATGACAC
CAACGCTCCCACACACACGTAGTTTACACAGACGCAGTGCACACACTGCG
CGCCACGAGGCAAAGAGGCGGCAGCAGAGACTGCAGAGCAGGTGAACTGC
TGGAGTGCATCCATCTCTCCTCCTCTCCTACAACTCTCATCGTATCATCG
ATCAACCAACCGCTACACGTCCCCTTCATTAGAAGAAGCGGACGCAGAGC
AATCAAAGCCACTGACATAGACACACAAAAACTCATTGGCAACCTGATTT
CGGAAAGAGAGAAGTATGGTGAATCTACTGAGGCCTTTGGCACTGGTGGA
ACTAAGCGCAGCTTTTGCGAGGATGGGGCGACCGTCCTCGAATCGGTAAG
AGGAGGACGACGAGGAGAGGGAGGGAGAGGAAGTGGAGGAGGAGGACGAG
GAGAGGAAGGGAAGAACGTGAGGTATGCTTACGATGGTAGTTTTGATGGT
GGATGGATAGGATTTGAAGAAGGGTGCACAACGAGGCAGAAGAGGAGGAA
GAAGACCGTGCTGGTGTTGAAATTGTATTGGTATAGCATGTCTGACAACA
TCCTACTCATCACTCCCTCACTCCCTTCCTCCCTCCCCCTCAGGGCCCGT
CGAGGCTTGTTTGCAGGGAAAGACGTACTGTTTGGGAACATGGTCAGTCA
CTCAAACCGGAAGACTAGGCGAATGTTCAAACCCAACTCGCAACGGAAAC
GATTGTGGAGCGATGCCTTGGAGGACATGATCCCCTTTAACCTGACCACG
ACGACTCTACGGATGGTGGACAAAGCGGGAGGCCTCGATAACTATCTCCT
CCAAACCCCGGACCATAAGCTTGACTCGGAGAGCGGCATCCGGATCAAGC
GGCAAATCGAGAGAAAGCTGGCTCGCGCCGAGCAGCTCCAACAACAACAA
GCACCATCAGCCCCACCATCCCCAGCAGCAGGAGGAGGAGGAGGAGGGCT
AGGCTTGGGTATGAAGGGGCTAGGAGACATGTTGGGAGGAGGAGGGGGAG
GAATGTAGACAGGCGAAAGAGAGAGAGGGGATGGAAAGAAGAAAGATTCG
TTTGGGCGAACGTGATTAAAGAATCGAGGACGACAAATGTGCCTGTTCTG
ATT back to topprotein sequence of NO24G00200.3 >NO24G00200.3-protein ID=NO24G00200.3-protein|Name=NO24G00200.3|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MSDNILLITPSLPSSLPLRARRGLFAGKDVLFGNMVSHSNRKTRRMFKPN
SQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESG
IRIKRQIERKLARAEQLQQQQAPSAPPSPAAGGGGGGLGLGMKGLGDMLG
GGGGGM* back to topmRNA from alignment at chr24:62314..64265- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00200.3 ID=NO24G00200.3|Name=NO24G00200.3|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at chr24:62314..64265- (Nannochloropsis oceanica)
GGGGGGGGGGCAGAGAATGTGGGTAAGCAAGACTTTGAGCGATCGCTTCG
AGACAGACTTCTTGATGTCAAGTACGACTAGATCACACATACGATGACAC
CAACGCTCCCACACACACGTAGTTTACACAGACGCAGTGCACACACTGCG
CGCCACGAGGCAAAGAGGCGGCAGCAGAGACTGCAGAGCAGGTGAACTGC
TGGAGTGCATCCATCTCTCCTCCTCTCCTACAACTCTCATCGTATCATCG
ATCAACCAACCGCTACACGTCCCCTTCATTAGAAGAAGCGGACGCAGAGC
AATCAAAGCCACTGACATAGACACACAAAAACTCATTGGCAACCTGATTT
CGGAAAGAGAGAAGTATGGTGAATCTACTGAGGCCTTTGGCACTGGTGGA
ACTAAGCGCAGCTTTTGCGAGGATGGGGCGACCGTCCTCGAATCGGTAAG
AGGAGGACGACGAGGAGAGGGAGGGAGAGGAAGTGGAGGAGGAGGACGAG
GAGAGGAAGGGAAGAACGTGAGGTATGCTTACGATGGTAGTTTTGATGGT
GGATGGATAGGATTTGAAGAAGGGTGCACAACGAGGCAGAAGAGGAGGAA
GAAGACCGTGCTGGTGTTGAAATTGTATTGGTATAGCATGTCTGACAACA
TCCTACTCATCACTCCCTCACTCCCTTCCTCCCTCCCCCTCAGGGCCCGT
CGAGGCTTGTTTGCAGGGAAAGACGTACTGTTTGGGAACATGGTCAGTCA
CTCAAACCGGAAGTAAGTGCGCGGGGGCAAGGGAGGGAGGAAAGGAAGGG
AGGAAGGGAGGGAGGGAGAGAAGGAGAGAGGAAAGAGGGAGTATGTAGTA
CTTAGCATTAAAAGCCTCCAATTTATGAGAGCGAGCAGAAGCATGAATAG
AGGAGAATGAAAACAAGTCATCTGTCTTTTTATACGTTTCTTCCTCGTCT
TCTTTCCATGGAATCGTACTTCTATCCCTCGAAGGCTCACTTCTCCCTCT
GCCCCCCTCCCTCCCCCCTCCCTCCCCCCCTCCTTCTAGGACTAGGCGAA
TGTTCAAACCCAACTCGCAACGGAAACGATTGTGGAGCGATGCCTTGGAG
GTAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAAGGTCTGCGGAGGGACAA
TTTTTCTTGTGTATGTGTGTGTGCAATAACCTTTCGATCGGCTCATCCAC
CCAGCTTCCCTCCCTCCCTTCCTCCCTCCCAATAGGACATGATCCCCTTT
AACCTGACCACGACGACTCTACGGATGGTGGACAAAGCGGGAGGTGCGTC
GAGGGATGGAGGGAGGAAGGGAGGAAGGGGGAGAAGGTGGAAGGAAATTG
GATTAGAGAGATACGACTCTTTCCCCACCAACTGGAAGAGTGGCTCACAC
ACCTTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCAGGCCTCGATAACTA
TCTCCTCCAAACCCCGGACCATAAGCTTGACTCGGAGAGCGGCATCCGGG
TACGTGCTGGCAAGCTCTCCCTGCCTTCCTCCCTCCCTCCCTCTCTTCCT
CCTTCTGCATTCGGCTCCTCCCTTTGACCCCCACTCCCTGTCTGCCTTTC
ACTCCTATCCTGGGCGAGTAGCGTGTGTAAAAAGCAACCTACATCGATCC
TCATCTCCTCCTCCCTCCTTCCCTCCCCCTCACCAACGACAGATCAAGCG
GCAAATCGAGAGAAAGCTGGCTCGCGCCGAGCAGCTCCAACAACAACAAG
CACCATCAGCCCCACCATCCCCAGCAGCAGGAGGAGGAGGAGGAGGGCTA
GGCTTGGGTATGAAGGGGCTAGGAGACATGTTGGGAGGAGGAGGGGGAGG
AATGTAGACAGGCGAAAGAGAGAGAGGGGATGGAAAGAAGAAAGATTCGT
TTGGGCGAACGTGATTAAAGAATCGAGGACGACAAATGTGCCTGTTCTGA
TT back to topCoding sequence (CDS) from alignment at chr24:62314..64265- >NO24G00200.3 ID=NO24G00200.3|Name=NO24G00200.3|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr24:62314..64265- (Nannochloropsis oceanica)
ATGTCTGACAACATCCTACTCATCACTCCCTCACTCCCTTCCTCCCTCCC
CCTCAGGGCCCGTCGAGGCTTGTTTGCAGGGAAAGACGTACTGTTTGGGA
ACATGGTCAGTCACTCAAACCGGAAGACTAGGCGAATGTTCAAACCCAAC
TCGCAACGGAAACGATTGTGGAGCGATGCCTTGGAGGACATGATCCCCTT
TAACCTGACCACGACGACTCTACGGATGGTGGACAAAGCGGGAGGCCTCG
ATAACTATCTCCTCCAAACCCCGGACCATAAGCTTGACTCGGAGAGCGGC
ATCCGGATCAAGCGGCAAATCGAGAGAAAGCTGGCTCGCGCCGAGCAGCT
CCAACAACAACAAGCACCATCAGCCCCACCATCCCCAGCAGCAGGAGGAG
GAGGAGGAGGGCTAGGCTTGGGTATGAAGGGGCTAGGAGACATGTTGGGA
GGAGGAGGGGGAGGAATGTAG back to top
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