NO24G00200.2, NO24G00200.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00200.2
Unique NameNO24G00200.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1148
Alignment locationchr24:62314..64265 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:62314..64265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00200.2 vs.
Match: XP_005832627.1 (hypothetical protein GUITHDRAFT_71217, partial [Guillardia theta CCMP2712]; EKX45647.1 hypothetical protein GUITHDRAFT_71217, partial [Guillardia theta CCMP2712])

HSP 1 Score: 103.2 bits (256), Expect = 6.400e-19
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0 
Query:   27 RARRGLFAGKDVLFGNMVSHSNRKTRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPDHKLDSESGIRVR 113
            RA RGLF GK + FGN VS S RKTRR + PN Q+KRLWSD  + MI   +TT+ L+ +DK GGLDNYL+ T D KLDS  G++++
Sbjct:    1 RADRGLFGGKKIGFGNNVSFSERKTRRTWMPNVQQKRLWSDCFDTMIKLRITTSVLKTIDKHGGLDNYLVNTADVKLDSALGVKLK 86
The following BLAST results are available for this feature:
BLAST of NO24G00200.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005832627.16.400e-1956.98hypothetical protein GUITHDRAFT_71217, partial [Gu... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00200NO24G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00200.2NO24G00200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00200.2.cds1NO24G00200.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00200.2.cds2NO24G00200.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00200.2.cds3NO24G00200.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00200.2.cds4NO24G00200.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00200.2.cds5NO24G00200.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00200.2 ID=NO24G00200.2|Name=NO24G00200.2|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
GGGGGGGGGGCAGAGAATGTGGGTAAGCAAGACTTTGAGCGATCGCTTCG
AGACAGACTTCTTGATGTCAAGTACGACTAGATCACACATACGATGACAC
CAACGCTCCCACACACACGTAGTTTACACAGACGCAGTGCACACACTGCG
CGCCACGAGGCAAAGAGGCGGCAGCAGAGACTGCAGAGCAGGTGAACTGC
TGGAGTGCATCCATCTCTCCTCCTCTCCTACAACTCTCATCGTATCATCG
ATCAACCAACCGCTACACGTCCCCTTCATTAGAAGAAGCGGACGCAGAGC
AATCAAAGCCACTGACATAGACACACAAAAACTCATTGGCAACCTGATTT
CGGAAAGAGAGAAGTATGGTGAATCTACTGAGGCCTTTGGCACTGGTGGA
ACTAAGCGCAGCTTTTGCGAGGATGGGGCGACCGTCCTCGAATCGGGCCC
GTCGAGGCTTGTTTGCAGGGAAAGACGTACTGTTTGGGAACATGGTCAGT
CACTCAAACCGGAAGACTAGGCGAATGTTCAAACCCAACTCGCAACGGAA
ACGATTGTGGAGCGATGCCTTGGAGGACATGATCCCCTTTAACCTGACCA
CGACGACTCTACGGATGGTGGACAAAGCGGGAGGCCTCGATAACTATCTC
CTCCAAACCCCGGACCATAAGCTTGACTCGGAGAGCGGCATCCGGGTACG
TGCTGGCAAGCTCTCCCTGCCTTCCTCCCTCCCTCCCTCTCTTCCTCCTT
CTGCATTCGGCTCCTCCCTTTGACCCCCACTCCCTGTCTGCCTTTCACTC
CTATCCTGGGCGAGTAGCGTGTGTAAAAAGCAACCTACATCGATCCTCAT
CTCCTCCTCCCTCCTTCCCTCCCCCTCACCAACGACAGATCAAGCGGCAA
ATCGAGAGAAAGCTGGCTCGCGCCGAGCAGCTCCAACAACAACAAGCACC
ATCAGCCCCACCATCCCCAGCAGCAGGAGGAGGAGGAGGAGGGCTAGGCT
TGGGTATGAAGGGGCTAGGAGACATGTTGGGAGGAGGAGGGGGAGGAATG
TAGACAGGCGAAAGAGAGAGAGGGGATGGAAAGAAGAAAGATTCGTTTGG
GCGAACGTGATTAAAGAATCGAGGACGACAAATGTGCCTGTTCTGATT
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protein sequence of NO24G00200.2

>NO24G00200.2-protein ID=NO24G00200.2-protein|Name=NO24G00200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MVNLLRPLALVELSAAFARMGRPSSNRARRGLFAGKDVLFGNMVSHSNRK
TRRMFKPNSQRKRLWSDALEDMIPFNLTTTTLRMVDKAGGLDNYLLQTPD
HKLDSESGIRVRAGKLSLPSSLPPSLPPSAFGSSL*
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mRNA from alignment at chr24:62314..64265-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00200.2 ID=NO24G00200.2|Name=NO24G00200.2|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at chr24:62314..64265- (Nannochloropsis oceanica)
GGGGGGGGGGCAGAGAATGTGGGTAAGCAAGACTTTGAGCGATCGCTTCG
AGACAGACTTCTTGATGTCAAGTACGACTAGATCACACATACGATGACAC
CAACGCTCCCACACACACGTAGTTTACACAGACGCAGTGCACACACTGCG
CGCCACGAGGCAAAGAGGCGGCAGCAGAGACTGCAGAGCAGGTGAACTGC
TGGAGTGCATCCATCTCTCCTCCTCTCCTACAACTCTCATCGTATCATCG
ATCAACCAACCGCTACACGTCCCCTTCATTAGAAGAAGCGGACGCAGAGC
AATCAAAGCCACTGACATAGACACACAAAAACTCATTGGCAACCTGATTT
CGGAAAGAGAGAAGTATGGTGAATCTACTGAGGCCTTTGGCACTGGTGGA
ACTAAGCGCAGCTTTTGCGAGGATGGGGCGACCGTCCTCGAATCGGTAAG
AGGAGGACGACGAGGAGAGGGAGGGAGAGGAAGTGGAGGAGGAGGACGAG
GAGAGGAAGGGAAGAACGTGAGGTATGCTTACGATGGTAGTTTTGATGGT
GGATGGATAGGATTTGAAGAAGGGTGCACAACGAGGCAGAAGAGGAGGAA
GAAGACCGTGCTGGTGTTGAAATTGTATTGGTATAGCATGTCTGACAACA
TCCTACTCATCACTCCCTCACTCCCTTCCTCCCTCCCCCTCAGGGCCCGT
CGAGGCTTGTTTGCAGGGAAAGACGTACTGTTTGGGAACATGGTCAGTCA
CTCAAACCGGAAGTAAGTGCGCGGGGGCAAGGGAGGGAGGAAAGGAAGGG
AGGAAGGGAGGGAGGGAGAGAAGGAGAGAGGAAAGAGGGAGTATGTAGTA
CTTAGCATTAAAAGCCTCCAATTTATGAGAGCGAGCAGAAGCATGAATAG
AGGAGAATGAAAACAAGTCATCTGTCTTTTTATACGTTTCTTCCTCGTCT
TCTTTCCATGGAATCGTACTTCTATCCCTCGAAGGCTCACTTCTCCCTCT
GCCCCCCTCCCTCCCCCCTCCCTCCCCCCCTCCTTCTAGGACTAGGCGAA
TGTTCAAACCCAACTCGCAACGGAAACGATTGTGGAGCGATGCCTTGGAG
GTAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAAGGTCTGCGGAGGGACAA
TTTTTCTTGTGTATGTGTGTGTGCAATAACCTTTCGATCGGCTCATCCAC
CCAGCTTCCCTCCCTCCCTTCCTCCCTCCCAATAGGACATGATCCCCTTT
AACCTGACCACGACGACTCTACGGATGGTGGACAAAGCGGGAGGTGCGTC
GAGGGATGGAGGGAGGAAGGGAGGAAGGGGGAGAAGGTGGAAGGAAATTG
GATTAGAGAGATACGACTCTTTCCCCACCAACTGGAAGAGTGGCTCACAC
ACCTTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCAGGCCTCGATAACTA
TCTCCTCCAAACCCCGGACCATAAGCTTGACTCGGAGAGCGGCATCCGGG
TACGTGCTGGCAAGCTCTCCCTGCCTTCCTCCCTCCCTCCCTCTCTTCCT
CCTTCTGCATTCGGCTCCTCCCTTTGACCCCCACTCCCTGTCTGCCTTTC
ACTCCTATCCTGGGCGAGTAGCGTGTGTAAAAAGCAACCTACATCGATCC
TCATCTCCTCCTCCCTCCTTCCCTCCCCCTCACCAACGACAGATCAAGCG
GCAAATCGAGAGAAAGCTGGCTCGCGCCGAGCAGCTCCAACAACAACAAG
CACCATCAGCCCCACCATCCCCAGCAGCAGGAGGAGGAGGAGGAGGGCTA
GGCTTGGGTATGAAGGGGCTAGGAGACATGTTGGGAGGAGGAGGGGGAGG
AATGTAGACAGGCGAAAGAGAGAGAGGGGATGGAAAGAAGAAAGATTCGT
TTGGGCGAACGTGATTAAAGAATCGAGGACGACAAATGTGCCTGTTCTGA
TT
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Coding sequence (CDS) from alignment at chr24:62314..64265-

>NO24G00200.2 ID=NO24G00200.2|Name=NO24G00200.2|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at chr24:62314..64265- (Nannochloropsis oceanica)
ATGGTGAATCTACTGAGGCCTTTGGCACTGGTGGAACTAAGCGCAGCTTT
TGCGAGGATGGGGCGACCGTCCTCGAATCGGGCCCGTCGAGGCTTGTTTG
CAGGGAAAGACGTACTGTTTGGGAACATGGTCAGTCACTCAAACCGGAAG
ACTAGGCGAATGTTCAAACCCAACTCGCAACGGAAACGATTGTGGAGCGA
TGCCTTGGAGGACATGATCCCCTTTAACCTGACCACGACGACTCTACGGA
TGGTGGACAAAGCGGGAGGCCTCGATAACTATCTCCTCCAAACCCCGGAC
CATAAGCTTGACTCGGAGAGCGGCATCCGGGTACGTGCTGGCAAGCTCTC
CCTGCCTTCCTCCCTCCCTCCCTCTCTTCCTCCTTCTGCATTCGGCTCCT
CCCTTTGA
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Synonyms
Publications