NO23G00830, NO23G00830 (gene) Nannochloropsis oceanica

Overview
NameNO23G00830
Unique NameNO23G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2790
Alignment locationchr23:309417..312206 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:309417..312206 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR006553Leu-rich_rpt_Cys-con_subtyp
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00830.1NO23G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602003gene_8433Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00830.1NO23G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00830 ID=NO23G00830|Name=NO23G00830|organism=Nannochloropsis oceanica|type=gene|length=2790bp
CGCTCGGCGAGAAGTCATCATTCTCTTCCTTCCTCCTTTCCCCACGTCAC
ACATGTTCCCAACCCCCCACCGCCAGCCTGGGCAGACCCAGTCACTAATC
TTTGGGGGGAGGGCGAATGGACAGCATCGTCTTCGCCAAGGCGCAATCAT
GCTGTACCGCCCCTGAGCGATGCATGCTCCCTTTCTGGATGACACATGTA
CAAGTACCGAGATGGCTGTTCGCCGCGCTCCAAGAGCCTCCTTCCTTTGT
CTCTTGTTGTACCCTTGTTTCACGGGAGCTTGTCAGACTCATGCGCATTC
TCAACCCCGGCACCACAGGCAAGACGATAAAGAGAGCCGCAAGCAAGGAC
ACATCTTCCCTCAAAAATTGGAGATCGAAGGGGCGCTGTGTGCGTCTTTC
GCTCAAGCACGCAAGCTGAGGTGGATGAGGGCGTCGCAGCCACCGCCGCA
CTATCTCGAACACGAGCTACCTCGAAATCGAGCCGGTGCATGGCCCCACC
ATCCTCCTCCTCCTCCTCATCCTCCTCACCCTTTACTCCACCACCATCAC
CAGTACCCTGTCTTCCTCCCGCAGTCGCATCAGGAGGCGGTGCTGATGCA
CAGGCAGAATTATGGTCCTCCTAATCAATTTGAGCGCGTCTCGTCTATGC
ATCCCTCCTACGGTCCACCTGGCGATGAGCCCCAGCAATCAGCGCCCCCT
TCACACTTCTACCATCAACCTTATCATCACCAACACGAATATTTTCAGCA
TCAGCGGAACTATCAGCACCATCCGCAGTATCCCGTCCATGCTTTCCAGC
CACCTTTCCACCACCCTATTCATGGCTTTTTCCCTCCTTCTCCTTCTCCT
CCTCCTCCTTTTCCTCCTCCCCCTCCTCCTGCTCGCCAGTGGAGGGACGG
CAAGATTCCCCTCATGGCTGAAGTTCGACGGGGTAGGACGCATTCATTAC
CGTCGTCGTCACCCTGCCCGAAATCAAATCTCGTTCGGGGCTTGCGGGGG
GGTGGTCAGTGTCACATTGGAGCCAGTGGCATGACCAAAGGCTTCTTCGG
GAGTCGGGGGCGCAACAGCAACAGTTGGCGGGGAGGACGTGGAGGACGAG
GAGGACAAGGAGCAGAAGGAGCAGAAGGAGCAGATAGAGGAGATGGAGGC
GTAAAGGAGATTCAATGCGACGACCGAAAGGTCTTGTTGAGCTTAGTCAC
CGCCAGGACGGCGGGTCCAACACCAAACGCGACAGCGATCGAAAAGGTCA
AGTGTGTGATCGAACAAATGCACATGGTAGCGCCCTTCCTCACCCCTGCG
GAGGGCTTGCGGCTATCGGGAGTAGTGCGAAGTTGGACACGAGGCTACCG
GGAAGTGACGCGAGAGCTGCGCGTAGGAGAACCGCCGTCCGGCATGGCCG
TTTCGGGCCATTGGACCTCTCTTCTCAACCTCTTGTCTTCCTTGACGAAT
TTAGAGACCTTGCGCGTCACGCATTACCGCTCAGTATTTGGTGTTACGAA
GTGTCTGGGGTACCGCTTGACACAGCGTCTAGTATGTTTGGAGCTGAGTC
ATTCCAAAATGTGGTGCACCGACGCTGGGCGTCTTATGGGTGCTTTGATT
CAGAAATACTTGCCTGCCCTCGAGCGCTTGCTTTTGATAGACTGCGGGTT
GGGCGACCGCGCGATCGAGCACCTTGCGGTTGCGGTCCTGTCAGGTGGCT
GTCGGAATCTGGTCGAGTTGGAATTGGGGGACAACACCTTCCGTGAATCT
ATTTTGAGCCTAGCCACGGCATTGAACAGCACGTGTGTATCCTCTGCAGA
TGAGAAAGGAGTGGGGGATGAGCGGGTACCCACTACCAAGCTAAGGTTGT
TGGGATTGGGAGGGAATGTGCTTCAGAAGGAAGGGGCAAAGTTGCTCGTG
CTGGGTTTATCGCATTGCAATGGTCGTGACAGTGCGGGCATGGGAAAAGA
AAGTAATCTGAGGTACCTTACCGAGCTGAATGTCGTGGAGTGCGGGCTCG
AACTCGAAGGACTGGAAGCTCTGTGTCCAGGCCTGCGGCAGGGCCCCTTA
TCTCGTCTTACTGCCCTCCGCTTGAACGCGAACCGGTTAGGTGACGCGGG
TGTGGCACTTCTGGCCTCGGCAGTGACGGAAGGTGCGTTGTCGGGGTTGC
GTGACTTAGATTTGGGTGCAAACTACCTTTCAGACAATGGGATGCGTGCC
CTTCTAGATGTCGTCAAGACAGGAATGGCTTTGCAGCAGCTGCGCCGACT
GAATCTGTCTTTCAACTTTTTGACGCCCGAGACGGTGTGGGCATTATTGC
AGTGCTGTGAGTTCGGAGAGGGCGGGAGGGAGAACGCCAGAGATGATGAT
GGTGGTATGGCCAATCAAGGCGGCTGGGCGTTCTTGCAGCAGTGCGATAT
GTACATGAATGAAATCACAGCGAAGGAACGTGCCGAACTGCAGCTTGCGC
TCAAGGAGCGGGCTCCGGGGCTAGACTGCTTCATGTGATATCGACGGGGA
TTGTATCTGACATATGTAGAGCAGGAAAGATTTGGAGGCAAGTGTAGGAC
AGCAAATAAATCGAATGAACTTTGCTTGATTCGCTTCCCGGCCGATATGA
AAGAGAAAGTATGCAAAAGATCTGATTTGGTCATGAAGCGCCAAGAACCC
ACAGCAGATTATATCAGGAAAGGAGTTGAAGGCTAATCAACATACTAGAG
TTATTGAGCCAGCTACATATAGATGAGACAAAAAAGACACCAGCGAATGA
AACAGTAACCAAAGTACAAAAACATGAAGATACTCTAGAG
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protein sequence of NO23G00830.1

>NO23G00830.1-protein ID=NO23G00830.1-protein|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=773bp
MHAPFLDDTCTSTEMAVRRAPRASFLCLLLYPCFTGACQTHAHSQPRHHR
QDDKESRKQGHIFPQKLEIEGALCASFAQARKLRWMRASQPPPHYLEHEL
PRNRAGAWPHHPPPPPHPPHPLLHHHHQYPVFLPQSHQEAVLMHRQNYGP
PNQFERVSSMHPSYGPPGDEPQQSAPPSHFYHQPYHHQHEYFQHQRNYQH
HPQYPVHAFQPPFHHPIHGFFPPSPSPPPPFPPPPPPARQWRDGKIPLMA
EVRRGRTHSLPSSSPCPKSNLVRGLRGGGQCHIGASGMTKGFFGSRGRNS
NSWRGGRGGRGGQGAEGAEGADRGDGGVKEIQCDDRKVLLSLVTARTAGP
TPNATAIEKVKCVIEQMHMVAPFLTPAEGLRLSGVVRSWTRGYREVTREL
RVGEPPSGMAVSGHWTSLLNLLSSLTNLETLRVTHYRSVFGVTKCLGYRL
TQRLVCLELSHSKMWCTDAGRLMGALIQKYLPALERLLLIDCGLGDRAIE
HLAVAVLSGGCRNLVELELGDNTFRESILSLATALNSTCVSSADEKGVGD
ERVPTTKLRLLGLGGNVLQKEGAKLLVLGLSHCNGRDSAGMGKESNLRYL
TELNVVECGLELEGLEALCPGLRQGPLSRLTALRLNANRLGDAGVALLAS
AVTEGALSGLRDLDLGANYLSDNGMRALLDVVKTGMALQQLRRLNLSFNF
LTPETVWALLQCCEFGEGGRENARDDDGGMANQGGWAFLQQCDMYMNEIT
AKERAELQLALKERAPGLDCFM*
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Synonyms
Publications