Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr23 genome chr23:309417..312206 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00830.1 vs.
Match: EWM23557.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana])
HSP 1 Score: 82.4 bits (202), Expect = 6.700e-12
Identity = 75/271 (27.68%), Postives = 115/271 (42.44%), Query Frame = 0
Query: 457 LELSHSKMWCTDAGRLMGALIQKYLPALERLLLIDCGLGDRAIEHLAVAVLSGGCRNLVELELGDN-TFRESILSLATALNSTCVSSADEKGVGDERVPTTKLRLLGLGGNVLQKEGAKLLVLGLSHCNGRDSAGMGKESNLRYLTELNVVECGLELEGLEALCPGLRQGPLSRLTALRLNANRLGDAGVALLASAVTEGALSGLRDLDLGANYLSDNGMRALLDVVKTGMALQQLRRLNLSFNFLTPETVWALLQCCEFG-EGGRENARD 726
L LS ++++ L AL Q PAL L L +G + + + G C L L++G N + E LA+AL P ++ L + N + EGA LL + + +R L LN+ G+ EG+ L L +G RL +L L +N LG G A +A+ +G + GL LDL N +SD LL ++ + + L LR ++++FN L P + G EGG R+
Sbjct: 358 LILSRNRIYGDGTAALTEALGQGRCPALTWLDLRGNKIGSKGAASVGSLLSRGTCPRLAGLDVGGNYLYAEGTALLASALIQR---------------PQPAMKSLDVEDNAMTAEGAFLLSEAI------------RRGAVRGLERLNLGRNGIHAEGVGFLMAALAEGSCPRLRSLSLRSNELGPFGFAHVAACFQQGGMKGLEFLDLAVNGMSDEPATLLLPILLSPVLLPALRDVDMTFNGLDPTRARCQVLALRGGREGGSHGGRE 601
The following BLAST results are available for this feature:
BLAST of NO23G00830.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 6.70e-12 / Id = 27.68 Sequence EWM23557.1
Match Name E-value Identity Description
EWM23557.1 6.700e-12 27.68 Leucine-rich repeat, cysteine-containing subtype [... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO23G00830.1 ID=NO23G00830.1|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp back to top protein sequence of NO23G00830.1
>NO23G00830.1-protein ID=NO23G00830.1-protein|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=773bp back to top mRNA from alignment at chr23:309417..312206+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00830.1 ID=NO23G00830.1|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp|location=Sequence derived from alignment at chr23:309417..312206+ (Nannochloropsis oceanica)ATGCATGCTCCCTTTCTGGATGACACATGTA
CAAGTACCGAGATGGCTGTTCGCCGCGCTCCAAGAGCCTCCTTCCTTTGT
CTCTTGTTGTACCCTTGTTTCACGGGAGCTTGTCAGACTCATGCGCATTC
TCAACCCCGGCACCACAGGCAAGACGATAAAGAGAGCCGCAAGCAAGGAC
ACATCTTCCCTCAAAAATTGGAGATCGAAGGGGCGCTGTGTGCGTCTTTC
GCTCAAGCACGCAAGCTGAGGTGGATGAGGGCGTCGCAGCCACCGCCGCA
CTATCTCGAACACGAGCTACCTCGAAATCGAGCCGGTGCATGGCCCCACC
ATCCTCCTCCTCCTCCTCATCCTCCTCACCCTTTACTCCACCACCATCAC
CAGTACCCTGTCTTCCTCCCGCAGTCGCATCAGGAGGCGGTGCTGATGCA
CAGGCAGAATTATGGTCCTCCTAATCAATTTGAGCGCGTCTCGTCTATGC
ATCCCTCCTACGGTCCACCTGGCGATGAGCCCCAGCAATCAGCGCCCCCT
TCACACTTCTACCATCAACCTTATCATCACCAACACGAATATTTTCAGCA
TCAGCGGAACTATCAGCACCATCCGCAGTATCCCGTCCATGCTTTCCAGC
CACCTTTCCACCACCCTATTCATGGCTTTTTCCCTCCTTCTCCTTCTCCT
CCTCCTCCTTTTCCTCCTCCCCCTCCTCCTGCTCGCCAGTGGAGGGACGG
CAAGATTCCCCTCATGGCTGAAGTTCGACGGGGTAGGACGCATTCATTAC
CGTCGTCGTCACCCTGCCCGAAATCAAATCTCGTTCGGGGCTTGCGGGGG
GGTGGTCAGTGTCACATTGGAGCCAGTGGCATGACCAAAGGCTTCTTCGG
GAGTCGGGGGCGCAACAGCAACAGTTGGCGGGGAGGACGTGGAGGACGAG
GAGGACAAGGAGCAGAAGGAGCAGAAGGAGCAGATAGAGGAGATGGAGGC
GTAAAGGAGATTCAATGCGACGACCGAAAGGTCTTGTTGAGCTTAGTCAC
CGCCAGGACGGCGGGTCCAACACCAAACGCGACAGCGATCGAAAAGGTCA
AGTGTGTGATCGAACAAATGCACATGGTAGCGCCCTTCCTCACCCCTGCG
GAGGGCTTGCGGCTATCGGGAGTAGTGCGAAGTTGGACACGAGGCTACCG
GGAAGTGACGCGAGAGCTGCGCGTAGGAGAACCGCCGTCCGGCATGGCCG
TTTCGGGCCATTGGACCTCTCTTCTCAACCTCTTGTCTTCCTTGACGAAT
TTAGAGACCTTGCGCGTCACGCATTACCGCTCAGTATTTGGTGTTACGAA
GTGTCTGGGGTACCGCTTGACACAGCGTCTAGTATGTTTGGAGCTGAGTC
ATTCCAAAATGTGGTGCACCGACGCTGGGCGTCTTATGGGTGCTTTGATT
CAGAAATACTTGCCTGCCCTCGAGCGCTTGCTTTTGATAGACTGCGGGTT
GGGCGACCGCGCGATCGAGCACCTTGCGGTTGCGGTCCTGTCAGGTGGCT
GTCGGAATCTGGTCGAGTTGGAATTGGGGGACAACACCTTCCGTGAATCT
ATTTTGAGCCTAGCCACGGCATTGAACAGCACGTGTGTATCCTCTGCAGA
TGAGAAAGGAGTGGGGGATGAGCGGGTACCCACTACCAAGCTAAGGTTGT
TGGGATTGGGAGGGAATGTGCTTCAGAAGGAAGGGGCAAAGTTGCTCGTG
CTGGGTTTATCGCATTGCAATGGTCGTGACAGTGCGGGCATGGGAAAAGA
AAGTAATCTGAGGTACCTTACCGAGCTGAATGTCGTGGAGTGCGGGCTCG
AACTCGAAGGACTGGAAGCTCTGTGTCCAGGCCTGCGGCAGGGCCCCTTA
TCTCGTCTTACTGCCCTCCGCTTGAACGCGAACCGGTTAGGTGACGCGGG
TGTGGCACTTCTGGCCTCGGCAGTGACGGAAGGTGCGTTGTCGGGGTTGC
GTGACTTAGATTTGGGTGCAAACTACCTTTCAGACAATGGGATGCGTGCC
CTTCTAGATGTCGTCAAGACAGGAATGGCTTTGCAGCAGCTGCGCCGACT
GAATCTGTCTTTCAACTTTTTGACGCCCGAGACGGTGTGGGCATTATTGC
AGTGCTGTGAGTTCGGAGAGGGCGGGAGGGAGAACGCCAGAGATGATGAT
GGTGGTATGGCCAATCAAGGCGGCTGGGCGTTCTTGCAGCAGTGCGATAT
GTACATGAATGAAATCACAGCGAAGGAACGTGCCGAACTGCAGCTTGCGC
TCAAGGAGCGGGCTCCGGGGCTAGACTGCTTCATGTGA back to top Coding sequence (CDS) from alignment at chr23:309417..312206+
>NO23G00830.1 ID=NO23G00830.1|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=2319bp|location=Sequence derived from alignment at chr23:309417..312206+ (Nannochloropsis oceanica) back to top