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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr23 | genome | chr23:309417..312206 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00830.1 vs.
Match: EWM23557.1 (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana]) HSP 1 Score: 82.4 bits (202), Expect = 6.700e-12 Identity = 75/271 (27.68%), Postives = 115/271 (42.44%), Query Frame = 0
Query: 457 LELSHSKMWCTDAGRLMGALIQKYLPALERLLLIDCGLGDRAIEHLAVAVLSGGCRNLVELELGDN-TFRESILSLATALNSTCVSSADEKGVGDERVPTTKLRLLGLGGNVLQKEGAKLLVLGLSHCNGRDSAGMGKESNLRYLTELNVVECGLELEGLEALCPGLRQGPLSRLTALRLNANRLGDAGVALLASAVTEGALSGLRDLDLGANYLSDNGMRALLDVVKTGMALQQLRRLNLSFNFLTPETVWALLQCCEFG-EGGRENARD 726
L LS ++++ L AL Q PAL L L +G + + + G C L L++G N + E LA+AL P ++ L + N + EGA LL + + +R L LN+ G+ EG+ L L +G RL +L L +N LG G A +A+ +G + GL LDL N +SD LL ++ + + L LR ++++FN L P + G EGG R+
Sbjct: 358 LILSRNRIYGDGTAALTEALGQGRCPALTWLDLRGNKIGSKGAASVGSLLSRGTCPRLAGLDVGGNYLYAEGTALLASALIQR---------------PQPAMKSLDVEDNAMTAEGAFLLSEAI------------RRGAVRGLERLNLGRNGIHAEGVGFLMAALAEGSCPRLRSLSLRSNELGPFGFAHVAACFQQGGMKGLEFLDLAVNGMSDEPATLLLPILLSPVLLPALRDVDMTFNGLDPTRARCQVLALRGGREGGSHGGRE 601
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00830.1 ID=NO23G00830.1|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp
CGCTCGGCGAGAAGTCATCATTCTCTTCCTTCCTCCTTTCCCCACGTCAC
ACATGTTCCCAACCCCCCACCGCCAGCCTGGGCAGACCCAGTCACTAATC
TTTGGGGGGAGGGCGAATGGACAGCATCGTCTTCGCCAAGGCGCAATCAT
GCTGTACCGCCCCTGAGCGATGCATGCTCCCTTTCTGGATGACACATGTA
CAAGTACCGAGATGGCTGTTCGCCGCGCTCCAAGAGCCTCCTTCCTTTGT
CTCTTGTTGTACCCTTGTTTCACGGGAGCTTGTCAGACTCATGCGCATTC
TCAACCCCGGCACCACAGGCAAGACGATAAAGAGAGCCGCAAGCAAGGAC
ACATCTTCCCTCAAAAATTGGAGATCGAAGGGGCGCTGTGTGCGTCTTTC
GCTCAAGCACGCAAGCTGAGGTGGATGAGGGCGTCGCAGCCACCGCCGCA
CTATCTCGAACACGAGCTACCTCGAAATCGAGCCGGTGCATGGCCCCACC
ATCCTCCTCCTCCTCCTCATCCTCCTCACCCTTTACTCCACCACCATCAC
CAGTACCCTGTCTTCCTCCCGCAGTCGCATCAGGAGGCGGTGCTGATGCA
CAGGCAGAATTATGGTCCTCCTAATCAATTTGAGCGCGTCTCGTCTATGC
ATCCCTCCTACGGTCCACCTGGCGATGAGCCCCAGCAATCAGCGCCCCCT
TCACACTTCTACCATCAACCTTATCATCACCAACACGAATATTTTCAGCA
TCAGCGGAACTATCAGCACCATCCGCAGTATCCCGTCCATGCTTTCCAGC
CACCTTTCCACCACCCTATTCATGGCTTTTTCCCTCCTTCTCCTTCTCCT
CCTCCTCCTTTTCCTCCTCCCCCTCCTCCTGCTCGCCAGTGGAGGGACGG
CAAGATTCCCCTCATGGCTGAAGTTCGACGGGGTAGGACGCATTCATTAC
CGTCGTCGTCACCCTGCCCGAAATCAAATCTCGTTCGGGGCTTGCGGGGG
GGTGGTCAGTGTCACATTGGAGCCAGTGGCATGACCAAAGGCTTCTTCGG
GAGTCGGGGGCGCAACAGCAACAGTTGGCGGGGAGGACGTGGAGGACGAG
GAGGACAAGGAGCAGAAGGAGCAGAAGGAGCAGATAGAGGAGATGGAGGC
GTAAAGGAGATTCAATGCGACGACCGAAAGGTCTTGTTGAGCTTAGTCAC
CGCCAGGACGGCGGGTCCAACACCAAACGCGACAGCGATCGAAAAGGTCA
AGTGTGTGATCGAACAAATGCACATGGTAGCGCCCTTCCTCACCCCTGCG
GAGGGCTTGCGGCTATCGGGAGTAGTGCGAAGTTGGACACGAGGCTACCG
GGAAGTGACGCGAGAGCTGCGCGTAGGAGAACCGCCGTCCGGCATGGCCG
TTTCGGGCCATTGGACCTCTCTTCTCAACCTCTTGTCTTCCTTGACGAAT
TTAGAGACCTTGCGCGTCACGCATTACCGCTCAGTATTTGGTGTTACGAA
GTGTCTGGGGTACCGCTTGACACAGCGTCTAGTATGTTTGGAGCTGAGTC
ATTCCAAAATGTGGTGCACCGACGCTGGGCGTCTTATGGGTGCTTTGATT
CAGAAATACTTGCCTGCCCTCGAGCGCTTGCTTTTGATAGACTGCGGGTT
GGGCGACCGCGCGATCGAGCACCTTGCGGTTGCGGTCCTGTCAGGTGGCT
GTCGGAATCTGGTCGAGTTGGAATTGGGGGACAACACCTTCCGTGAATCT
ATTTTGAGCCTAGCCACGGCATTGAACAGCACGTGTGTATCCTCTGCAGA
TGAGAAAGGAGTGGGGGATGAGCGGGTACCCACTACCAAGCTAAGGTTGT
TGGGATTGGGAGGGAATGTGCTTCAGAAGGAAGGGGCAAAGTTGCTCGTG
CTGGGTTTATCGCATTGCAATGGTCGTGACAGTGCGGGCATGGGAAAAGA
AAGTAATCTGAGGTACCTTACCGAGCTGAATGTCGTGGAGTGCGGGCTCG
AACTCGAAGGACTGGAAGCTCTGTGTCCAGGCCTGCGGCAGGGCCCCTTA
TCTCGTCTTACTGCCCTCCGCTTGAACGCGAACCGGTTAGGTGACGCGGG
TGTGGCACTTCTGGCCTCGGCAGTGACGGAAGGTGCGTTGTCGGGGTTGC
GTGACTTAGATTTGGGTGCAAACTACCTTTCAGACAATGGGATGCGTGCC
CTTCTAGATGTCGTCAAGACAGGAATGGCTTTGCAGCAGCTGCGCCGACT
GAATCTGTCTTTCAACTTTTTGACGCCCGAGACGGTGTGGGCATTATTGC
AGTGCTGTGAGTTCGGAGAGGGCGGGAGGGAGAACGCCAGAGATGATGAT
GGTGGTATGGCCAATCAAGGCGGCTGGGCGTTCTTGCAGCAGTGCGATAT
GTACATGAATGAAATCACAGCGAAGGAACGTGCCGAACTGCAGCTTGCGC
TCAAGGAGCGGGCTCCGGGGCTAGACTGCTTCATGTGATATCGACGGGGA
TTGTATCTGACATATGTAGAGCAGGAAAGATTTGGAGGCAAGTGTAGGAC
AGCAAATAAATCGAATGAACTTTGCTTGATTCGCTTCCCGGCCGATATGA
AAGAGAAAGTATGCAAAAGATCTGATTTGGTCATGAAGCGCCAAGAACCC
ACAGCAGATTATATCAGGAAAGGAGTTGAAGGCTAATCAACATACTAGAG
TTATTGAGCCAGCTACATATAGATGAGACAAAAAAGACACCAGCGAATGA
AACAGTAACCAAAGTACAAAAACATGAAGATACTCTAGAG back to topprotein sequence of NO23G00830.1 >NO23G00830.1-protein ID=NO23G00830.1-protein|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=773bp
MHAPFLDDTCTSTEMAVRRAPRASFLCLLLYPCFTGACQTHAHSQPRHHR
QDDKESRKQGHIFPQKLEIEGALCASFAQARKLRWMRASQPPPHYLEHEL
PRNRAGAWPHHPPPPPHPPHPLLHHHHQYPVFLPQSHQEAVLMHRQNYGP
PNQFERVSSMHPSYGPPGDEPQQSAPPSHFYHQPYHHQHEYFQHQRNYQH
HPQYPVHAFQPPFHHPIHGFFPPSPSPPPPFPPPPPPARQWRDGKIPLMA
EVRRGRTHSLPSSSPCPKSNLVRGLRGGGQCHIGASGMTKGFFGSRGRNS
NSWRGGRGGRGGQGAEGAEGADRGDGGVKEIQCDDRKVLLSLVTARTAGP
TPNATAIEKVKCVIEQMHMVAPFLTPAEGLRLSGVVRSWTRGYREVTREL
RVGEPPSGMAVSGHWTSLLNLLSSLTNLETLRVTHYRSVFGVTKCLGYRL
TQRLVCLELSHSKMWCTDAGRLMGALIQKYLPALERLLLIDCGLGDRAIE
HLAVAVLSGGCRNLVELELGDNTFRESILSLATALNSTCVSSADEKGVGD
ERVPTTKLRLLGLGGNVLQKEGAKLLVLGLSHCNGRDSAGMGKESNLRYL
TELNVVECGLELEGLEALCPGLRQGPLSRLTALRLNANRLGDAGVALLAS
AVTEGALSGLRDLDLGANYLSDNGMRALLDVVKTGMALQQLRRLNLSFNF
LTPETVWALLQCCEFGEGGRENARDDDGGMANQGGWAFLQQCDMYMNEIT
AKERAELQLALKERAPGLDCFM* back to topmRNA from alignment at chr23:309417..312206+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00830.1 ID=NO23G00830.1|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp|location=Sequence derived from alignment at chr23:309417..312206+ (Nannochloropsis oceanica)
CGCTCGGCGAGAAGTCATCATTCTCTTCCTTCCTCCTTTCCCCACGTCAC
ACATGTTCCCAACCCCCCACCGCCAGCCTGGGCAGACCCAGTCACTAATC
TTTGGGGGGAGGGCGAATGGACAGCATCGTCTTCGCCAAGGCGCAATCAT
GCTGTACCGCCCCTGAGCGATGCATGCTCCCTTTCTGGATGACACATGTA
CAAGTACCGAGATGGCTGTTCGCCGCGCTCCAAGAGCCTCCTTCCTTTGT
CTCTTGTTGTACCCTTGTTTCACGGGAGCTTGTCAGACTCATGCGCATTC
TCAACCCCGGCACCACAGGCAAGACGATAAAGAGAGCCGCAAGCAAGGAC
ACATCTTCCCTCAAAAATTGGAGATCGAAGGGGCGCTGTGTGCGTCTTTC
GCTCAAGCACGCAAGCTGAGGTGGATGAGGGCGTCGCAGCCACCGCCGCA
CTATCTCGAACACGAGCTACCTCGAAATCGAGCCGGTGCATGGCCCCACC
ATCCTCCTCCTCCTCCTCATCCTCCTCACCCTTTACTCCACCACCATCAC
CAGTACCCTGTCTTCCTCCCGCAGTCGCATCAGGAGGCGGTGCTGATGCA
CAGGCAGAATTATGGTCCTCCTAATCAATTTGAGCGCGTCTCGTCTATGC
ATCCCTCCTACGGTCCACCTGGCGATGAGCCCCAGCAATCAGCGCCCCCT
TCACACTTCTACCATCAACCTTATCATCACCAACACGAATATTTTCAGCA
TCAGCGGAACTATCAGCACCATCCGCAGTATCCCGTCCATGCTTTCCAGC
CACCTTTCCACCACCCTATTCATGGCTTTTTCCCTCCTTCTCCTTCTCCT
CCTCCTCCTTTTCCTCCTCCCCCTCCTCCTGCTCGCCAGTGGAGGGACGG
CAAGATTCCCCTCATGGCTGAAGTTCGACGGGGTAGGACGCATTCATTAC
CGTCGTCGTCACCCTGCCCGAAATCAAATCTCGTTCGGGGCTTGCGGGGG
GGTGGTCAGTGTCACATTGGAGCCAGTGGCATGACCAAAGGCTTCTTCGG
GAGTCGGGGGCGCAACAGCAACAGTTGGCGGGGAGGACGTGGAGGACGAG
GAGGACAAGGAGCAGAAGGAGCAGAAGGAGCAGATAGAGGAGATGGAGGC
GTAAAGGAGATTCAATGCGACGACCGAAAGGTCTTGTTGAGCTTAGTCAC
CGCCAGGACGGCGGGTCCAACACCAAACGCGACAGCGATCGAAAAGGTCA
AGTGTGTGATCGAACAAATGCACATGGTAGCGCCCTTCCTCACCCCTGCG
GAGGGCTTGCGGCTATCGGGAGTAGTGCGAAGTTGGACACGAGGCTACCG
GGAAGTGACGCGAGAGCTGCGCGTAGGAGAACCGCCGTCCGGCATGGCCG
TTTCGGGCCATTGGACCTCTCTTCTCAACCTCTTGTCTTCCTTGACGAAT
TTAGAGACCTTGCGCGTCACGCATTACCGCTCAGTATTTGGTGTTACGAA
GTGTCTGGGGTACCGCTTGACACAGCGTCTAGTATGTTTGGAGCTGAGTC
ATTCCAAAATGTGGTGCACCGACGCTGGGCGTCTTATGGGTGCTTTGATT
CAGAAATACTTGCCTGCCCTCGAGCGCTTGCTTTTGATAGACTGCGGGTT
GGGCGACCGCGCGATCGAGCACCTTGCGGTTGCGGTCCTGTCAGGTGGCT
GTCGGAATCTGGTCGAGTTGGAATTGGGGGACAACACCTTCCGTGAATCT
ATTTTGAGCCTAGCCACGGCATTGAACAGCACGTGTGTATCCTCTGCAGA
TGAGAAAGGAGTGGGGGATGAGCGGGTACCCACTACCAAGCTAAGGTTGT
TGGGATTGGGAGGGAATGTGCTTCAGAAGGAAGGGGCAAAGTTGCTCGTG
CTGGGTTTATCGCATTGCAATGGTCGTGACAGTGCGGGCATGGGAAAAGA
AAGTAATCTGAGGTACCTTACCGAGCTGAATGTCGTGGAGTGCGGGCTCG
AACTCGAAGGACTGGAAGCTCTGTGTCCAGGCCTGCGGCAGGGCCCCTTA
TCTCGTCTTACTGCCCTCCGCTTGAACGCGAACCGGTTAGGTGACGCGGG
TGTGGCACTTCTGGCCTCGGCAGTGACGGAAGGTGCGTTGTCGGGGTTGC
GTGACTTAGATTTGGGTGCAAACTACCTTTCAGACAATGGGATGCGTGCC
CTTCTAGATGTCGTCAAGACAGGAATGGCTTTGCAGCAGCTGCGCCGACT
GAATCTGTCTTTCAACTTTTTGACGCCCGAGACGGTGTGGGCATTATTGC
AGTGCTGTGAGTTCGGAGAGGGCGGGAGGGAGAACGCCAGAGATGATGAT
GGTGGTATGGCCAATCAAGGCGGCTGGGCGTTCTTGCAGCAGTGCGATAT
GTACATGAATGAAATCACAGCGAAGGAACGTGCCGAACTGCAGCTTGCGC
TCAAGGAGCGGGCTCCGGGGCTAGACTGCTTCATGTGATATCGACGGGGA
TTGTATCTGACATATGTAGAGCAGGAAAGATTTGGAGGCAAGTGTAGGAC
AGCAAATAAATCGAATGAACTTTGCTTGATTCGCTTCCCGGCCGATATGA
AAGAGAAAGTATGCAAAAGATCTGATTTGGTCATGAAGCGCCAAGAACCC
ACAGCAGATTATATCAGGAAAGGAGTTGAAGGCTAATCAACATACTAGAG
TTATTGAGCCAGCTACATATAGATGAGACAAAAAAGACACCAGCGAATGA
AACAGTAACCAAAGTACAAAAACATGAAGATACTCTAGAG back to topCoding sequence (CDS) from alignment at chr23:309417..312206+ >NO23G00830.1 ID=NO23G00830.1|Name=NO23G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=2319bp|location=Sequence derived from alignment at chr23:309417..312206+ (Nannochloropsis oceanica)
ATGCATGCTCCCTTTCTGGATGACACATGTACAAGTACCGAGATGGCTGT
TCGCCGCGCTCCAAGAGCCTCCTTCCTTTGTCTCTTGTTGTACCCTTGTT
TCACGGGAGCTTGTCAGACTCATGCGCATTCTCAACCCCGGCACCACAGG
CAAGACGATAAAGAGAGCCGCAAGCAAGGACACATCTTCCCTCAAAAATT
GGAGATCGAAGGGGCGCTGTGTGCGTCTTTCGCTCAAGCACGCAAGCTGA
GGTGGATGAGGGCGTCGCAGCCACCGCCGCACTATCTCGAACACGAGCTA
CCTCGAAATCGAGCCGGTGCATGGCCCCACCATCCTCCTCCTCCTCCTCA
TCCTCCTCACCCTTTACTCCACCACCATCACCAGTACCCTGTCTTCCTCC
CGCAGTCGCATCAGGAGGCGGTGCTGATGCACAGGCAGAATTATGGTCCT
CCTAATCAATTTGAGCGCGTCTCGTCTATGCATCCCTCCTACGGTCCACC
TGGCGATGAGCCCCAGCAATCAGCGCCCCCTTCACACTTCTACCATCAAC
CTTATCATCACCAACACGAATATTTTCAGCATCAGCGGAACTATCAGCAC
CATCCGCAGTATCCCGTCCATGCTTTCCAGCCACCTTTCCACCACCCTAT
TCATGGCTTTTTCCCTCCTTCTCCTTCTCCTCCTCCTCCTTTTCCTCCTC
CCCCTCCTCCTGCTCGCCAGTGGAGGGACGGCAAGATTCCCCTCATGGCT
GAAGTTCGACGGGGTAGGACGCATTCATTACCGTCGTCGTCACCCTGCCC
GAAATCAAATCTCGTTCGGGGCTTGCGGGGGGGTGGTCAGTGTCACATTG
GAGCCAGTGGCATGACCAAAGGCTTCTTCGGGAGTCGGGGGCGCAACAGC
AACAGTTGGCGGGGAGGACGTGGAGGACGAGGAGGACAAGGAGCAGAAGG
AGCAGAAGGAGCAGATAGAGGAGATGGAGGCGTAAAGGAGATTCAATGCG
ACGACCGAAAGGTCTTGTTGAGCTTAGTCACCGCCAGGACGGCGGGTCCA
ACACCAAACGCGACAGCGATCGAAAAGGTCAAGTGTGTGATCGAACAAAT
GCACATGGTAGCGCCCTTCCTCACCCCTGCGGAGGGCTTGCGGCTATCGG
GAGTAGTGCGAAGTTGGACACGAGGCTACCGGGAAGTGACGCGAGAGCTG
CGCGTAGGAGAACCGCCGTCCGGCATGGCCGTTTCGGGCCATTGGACCTC
TCTTCTCAACCTCTTGTCTTCCTTGACGAATTTAGAGACCTTGCGCGTCA
CGCATTACCGCTCAGTATTTGGTGTTACGAAGTGTCTGGGGTACCGCTTG
ACACAGCGTCTAGTATGTTTGGAGCTGAGTCATTCCAAAATGTGGTGCAC
CGACGCTGGGCGTCTTATGGGTGCTTTGATTCAGAAATACTTGCCTGCCC
TCGAGCGCTTGCTTTTGATAGACTGCGGGTTGGGCGACCGCGCGATCGAG
CACCTTGCGGTTGCGGTCCTGTCAGGTGGCTGTCGGAATCTGGTCGAGTT
GGAATTGGGGGACAACACCTTCCGTGAATCTATTTTGAGCCTAGCCACGG
CATTGAACAGCACGTGTGTATCCTCTGCAGATGAGAAAGGAGTGGGGGAT
GAGCGGGTACCCACTACCAAGCTAAGGTTGTTGGGATTGGGAGGGAATGT
GCTTCAGAAGGAAGGGGCAAAGTTGCTCGTGCTGGGTTTATCGCATTGCA
ATGGTCGTGACAGTGCGGGCATGGGAAAAGAAAGTAATCTGAGGTACCTT
ACCGAGCTGAATGTCGTGGAGTGCGGGCTCGAACTCGAAGGACTGGAAGC
TCTGTGTCCAGGCCTGCGGCAGGGCCCCTTATCTCGTCTTACTGCCCTCC
GCTTGAACGCGAACCGGTTAGGTGACGCGGGTGTGGCACTTCTGGCCTCG
GCAGTGACGGAAGGTGCGTTGTCGGGGTTGCGTGACTTAGATTTGGGTGC
AAACTACCTTTCAGACAATGGGATGCGTGCCCTTCTAGATGTCGTCAAGA
CAGGAATGGCTTTGCAGCAGCTGCGCCGACTGAATCTGTCTTTCAACTTT
TTGACGCCCGAGACGGTGTGGGCATTATTGCAGTGCTGTGAGTTCGGAGA
GGGCGGGAGGGAGAACGCCAGAGATGATGATGGTGGTATGGCCAATCAAG
GCGGCTGGGCGTTCTTGCAGCAGTGCGATATGTACATGAATGAAATCACA
GCGAAGGAACGTGCCGAACTGCAGCTTGCGCTCAAGGAGCGGGCTCCGGG
GCTAGACTGCTTCATGTGA back to top
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