NO22G02220, NO22G02220 (gene) Nannochloropsis oceanica

Overview
NameNO22G02220
Unique NameNO22G02220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3305
Alignment locationchr22:701686..704990 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:701686..704990 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO22G02220 vs. NCBI_GenBank
Match: XP_005855643.1 (hypothetical protein NGA_0645800, partial [Nannochloropsis gaditana CCMP526] >EKU20709.1 hypothetical protein NGA_0645800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 147.9 bits (372), Expect = 4.900e-32
Identity = 80/124 (64.52%), Postives = 90/124 (72.58%), Query Frame = 0 
Query:   29 PSSLAL---SHIFLPVSFIVVDCLASGIPTRRLFMLPYHIPSLYFPLLLLLLFSLFAGPRLDLGLAVGVGYGCAWGWADAFLPALPFLTRLEDEGGRVGGWLERRAGFVSAATARGTQAWLPTV 150
            PS+L L   S   + +  + VDCLAS +PTR+LF LP  IPSLYFPLLL LLFSLFAGPRLDLGLAVGVGY   WG+ D  LP L  LTR E+  GR+G WL  R GFVSAA ARG +AWLPTV
Sbjct:  136 PSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEE--GRIGSWLGSRTGFVSAAAARGAEAWLPTV 257
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BLAST of NO22G02220 vs. NCBI_GenBank
Match: EWM20523.1 (hypothetical protein Naga_100335g2 [Nannochloropsis gaditana])

HSP 1 Score: 121.7 bits (304), Expect = 3.800e-24
Identity = 95/267 (35.58%), Postives = 112/267 (41.95%), Query Frame = 0 
Query:   29 PSSLAL---SHIFLPVSFIVVDCLASGIPTRRLFMLPYHIPSLYFPLLLLLLFSLFAGPRLDLGLAVGVGYGCAWGWADAFLPALPFLTRLEDEGGRVGGWLERRAGFVSAATARGTQAWLPTVDPXXXXXXXXXXXXXXXXXXXXXXXXXXXVARNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKDLAAARAAKFGAPNGPMAPASNESEEETATLLQR 293
            PS+L L   S   + +  + VDCLAS +PTR+LF LP  IPSLYFPLLL LLFSLFAGPRLDLGLAVGVGY   WG+ D  LP L  LTR E+  GR+G WL  R G      + G+ A  P  +                                                                                                           ++LA ARAAKFG PNGP A +SNE+EEETATLL+R
Sbjct:  136 PSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEE--GRIGSWLGSRTG------SSGSSASRPPAN----------------------------------------------------------------------------------------------------------ARELAEARAAKFGGPNGPTASSSNENEEETATLLRR 288
The following BLAST results are available for this feature:
BLAST of NO22G02220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005855643.14.900e-3264.52hypothetical protein NGA_0645800, partial [Nannoch... [more]
EWM20523.13.800e-2435.58hypothetical protein Naga_100335g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR104ngnoR104Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G02220.1NO22G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO22G02220.2NO22G02220.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596190gene_7240Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100335g2gene9882Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G02220.1NO22G02220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO22G02220.2NO22G02220.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G02220 ID=NO22G02220|Name=NO22G02220|organism=Nannochloropsis oceanica|type=gene|length=3305bp
AAGATTGGCAGGAAGGGCGGGAGGGGAGGGGATCGACTATGAGGACTATG
AGCATAGGAAATCAATGATGATGGTGGTGGATGAGGGCACAGCAGAAAAC
ACCCGGCCCCAAAGGATGAACAGCAATCAGCGTGCCGAGAATAAGATGCT
GCTGTAGCCTAGTCTGAGAGGTCTTAAGCAAGAAAATTGCCTCTGGCCCT
TGGCATGCATTGCCGTGCTTGTAACCAGCCGCAATGAGATAGAGGGCGCG
TTGCAATAGTGAGGTAGGAACAAATTAATTGATCACAACCCAAAATCAAC
CCGCGCCTGGCAACATCCGCGCCCTTCAGATGATGCCAATGGTGTGTGGG
AAGATTGGGACTGGAGGGGCAGTGTGAGAGGTTTGTGGCGAAAGGGGCAC
CCCCATAGCCAAGCAAGAGGCATCAGCATGTCTGCCAGGCGTCATAATTT
GGAGGAGCCAGCAGTTAACCAGTGTGCCTTGATGAGCCTAGTTCAATGGA
CCCGGGGCCACCACATGTCTGGCAACATAAATTTAGCTGTGTAATGCGGA
AGGGAAGATGCAGGTGGTCGGGAAAGGCGGGAGTGTGGTGGTTGCGAGAG
GGTGGGTGGAGGGGCAAATAAATTGGAAAAGCCAGGCCTGGCTGCATCTC
TGAGATGACGTCCAACGCCTGCTTTCAGAAGAAGTTCTTCGCAAGAACTT
TTGCCTGCGGTCTAACATCAGGTTTTCTCAGTTCAGCGCCAAATTGTCAG
AGTGTGACAGTCAGCATAAAATTTCAGCTCGTATGTATGTTATCCCAGAA
CGCAGCAGCATGCAGCATGAGCCAGGCATTGTCACGCTCGCCATCTCCTC
CCTCGGTCTGCAATATTCGTGCGCTTGCCTTCCGCGCTGGCCTTTCCTAA
CTCCATTCGGTAGACCCTAACCAAAGACACGCTACATAATCGACCTCAAT
CGTACACAGAGGGAGTAACAATCCTAGCTGGGGTTCACATCAAGGGTTTT
TTGGTTGTCTTGACACGTTTTCCTCGACATCGAGCGCGCCTCTAGGAAGC
AGTAGACCCCCGGCCCTTGTCGTTCTCCTCATTTGAGTCCCGAGCCTTCA
TGGAGAGCAATCTTATTTCATAATTTCCAGTCTTATGTGATAATTACCCG
ATTCTTGTCAAAGTCCTCATCACCCTTTCTGTCGCTTTTGGCCCTACTGA
CCCAACCCGTCGTTTTCTACCCTCTCTCGCTCCTTCGCTCAACTTCCTCC
CTCAAGACAGAAATATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCT
AGCCCTCCCTCGTTATTCACCTCATCGAGAGACTGGTATGCGAATTGGTG
CATGACCACGCCGTTTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCC
TCTACCTCTTCTCCTGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATT
CCATACCTGACCATCTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCC
CTTCTACACGGAGGGGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGG
GGGGAATGGGCGCAACTCTTGAGCAGgtagggaaggagggagggagaaag
tggcctcgattagatgcgattgtcactttttcttcttctcctgcgatctc
ttttaaatttcggcatgtttctcactccctgtcccttctacatcgcagGC
GAAAGGCAGTACTTCCTTTTTCTGCTTGATGGCCGTCATCTCCCTCATTA
CCAACTTTCTCTTCCTCCTCGTCTGCCTCCTCCTCTCTCTCGTCATGCCC
TCTGCCTTATTCTACTCCGCAGGCTCCTTTTGGATGATCGTCATGGGGGT
CATGACTGgtaggtgttccggcagggaaggggaggtattgaaggaaggag
aggaaggcggcttggatgatcgtatccagccagttacggatgatctctgg
ggaggcgaagtgggtcattcatttccaccgtgctgattatccatcccacc
cctcttcccttgctttatctcacattttcctccccgtatctttcatcgta
gTCGATTGCCTTGCCTCCGGTATACCCACCCGCCGGCTCTTCATGCTGCC
CTACCATATCCCCTCGCTCTACTTCCCTCTCCTTCTCTTACTCCTCTTCT
CACTCTTCGCTGGCCCTCGTCTCGATCTCGGCCTTGCCGTGGGCGTCGGC
TACGGCTGTGCGTGGGGATGGGCTGACGCATTCCTCCCCGCCCTTCCTTT
TCTCACTCGATTGGAGGACGAGGGAGGGAGGGTGGGAGGGTGGTTGGAGA
GGAGGGCGGGCTTTGTGAGCGCGGCAACGGCCAGGGGGACGCAGGCATGG
TTGCCCACAGTGGATCCAGGAGCAGGAGGGGGAGCTGGGGGAGAGCTGGG
AGGCGAAGGAGGTGGGGGAGGAGGAGGAGGAGGAGGGAGGGGTTTCGGAG
TCGCGAGAAATCCGCCCACTATTCATAATGGTGGAGGTGGAGGAGGAGGG
GCGGCGGTAGGAAAGGCGCTGGGAGGAAGGGGGGGGGAGGTTACCACCTC
GGCATTTCAAGGGAGCGGACAGACTTTGGGTGGAGGAGGAGGAGGCGGAG
GAGGAAGAGGGGGATTTCTCGGAATGGGGGGAGGGAGCAGCAATGCCAGC
AGTGGCAGAAGCAGCAGTACGAAGCCGAGCAACCCTAAAGACCTGGCAGC
GGCGAGGGCCGCAAAGTTTGGAGCACCAAATGGACCCATGGCTCCGGCCT
CCAATGAAAGTGAGGAGGAGACGGCCACGCTATTGCAGCGGTAGAAAGTG
AGGAAGGGATGGGAGAAGGCAACTGAAAATGTGGGGATTAAAGCCGGGAA
TAAAGAAATGACATGTGTAGGCGGCTTTCACACTCCCGTGTCGCCTAGGA
TGACTTTACGGGAAACGGGATGGGGGAAGGATGAGAAAGGGAGCGTGGCA
AAAGTGGGGAGTGATCACGAACAGCCGTAGCATGAGCAGCAACACGCAAA
CTGATCATGGTCTTCACCACTACCAGCTGTGAAAACATCATCAGCATCCG
GAGCTCCATCATCTCAGTGACGACCGCCGTCTTCCCCTCCTCGTCCACCA
CCACTACCACCAGTTCCTCGATATTCCACAGGCTTGCAAGATGCAGGCAT
TGCTTCGCACCGAGGATTTTTCAAGTAAAGATGCACGAAGGTATGGAGGC
AATGGGTACGTGAGATGCACTAGCTGGTTCCATTTCATGGAAGCCAAGGA
TTCTACGGCGAGCCTGTCACCCAATAAATCTAAATAAAATCAAGAAATAT
CGGTG
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protein sequence of NO22G02220.1

>NO22G02220.1-protein ID=NO22G02220.1-protein|Name=NO22G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MSSGGPASATGPSPPSLFTSSRDWYANWCMTTPFVARSTLHLLLALYLFS
WLVDLAPYVSNIPYLTIYKFQLWRPFLSPFYTEGLLSVVFLCLSLGGMGA
TLEQAKGSTSFFCLMAVISLITNFLFLLVCLLLSLVMPSALFYSAGSFWM
IVMGVMTVDCLASGIPTRRLFMLPYHIPSLYFPLLLLLLFSLFAGPRLDL
GLAVGVGYGCAWGWADAFLPALPFLTRLEDEGGRVGGWLERRAGFVSAAT
ARGTQAWLPTVDPGAGGGAGGELGGEGGGGGGGGGGRGFGVARNPPTIHN
GGGGGGGAAVGKALGGRGGEVTTSAFQGSGQTLGGGGGGGGGRGGFLGMG
GGSSNASSGRSSSTKPSNPKDLAAARAAKFGAPNGPMAPASNESEEETAT
LLQR*
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protein sequence of NO22G02220.2

>NO22G02220.2-protein ID=NO22G02220.2-protein|Name=NO22G02220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MIVSSQLRMISGEAKWVIHFHRADYPSHPSSLALSHIFLPVSFIVVDCLA
SGIPTRRLFMLPYHIPSLYFPLLLLLLFSLFAGPRLDLGLAVGVGYGCAW
GWADAFLPALPFLTRLEDEGGRVGGWLERRAGFVSAATARGTQAWLPTVD
PGAGGGAGGELGGEGGGGGGGGGGRGFGVARNPPTIHNGGGGGGGAAVGK
ALGGRGGEVTTSAFQGSGQTLGGGGGGGGGRGGFLGMGGGSSNASSGRSS
STKPSNPKDLAAARAAKFGAPNGPMAPASNESEEETATLLQR*
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Synonyms
Publications