NO22G02220.2, NO22G02220.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G02220.2
Unique NameNO22G02220.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3183
Alignment locationchr22:701686..704990 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:701686..704990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G02220.2 vs.
Match: XP_005855643.1 (hypothetical protein NGA_0645800, partial [Nannochloropsis gaditana CCMP526]; EKU20709.1 hypothetical protein NGA_0645800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 147.9 bits (372), Expect = 4.900e-32
Identity = 80/124 (64.52%), Postives = 90/124 (72.58%), Query Frame = 0 
Query:   29 PSSLALS---HIFLPVSFIVVDCLASGIPTRRLFMLPYHIPSLYFPLLLLLLFSLFAGPRLDLGLAVGVGYGCAWGWADAFLPALPFLTRLEDEGGRVGGWLERRAGFVSAATARGTQAWLPTV 150
            PS+L LS      + +  + VDCLAS +PTR+LF LP  IPSLYFPLLL LLFSLFAGPRLDLGLAVGVGY   WG+ D  LP L  LTR E+  GR+G WL  R GFVSAA ARG +AWLPTV
Sbjct:  136 PSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEE--GRIGSWLGSRTGFVSAAAARGAEAWLPTV 257
The following BLAST results are available for this feature:
BLAST of NO22G02220.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855643.14.900e-3264.52hypothetical protein NGA_0645800, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G02220NO22G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G02220.2NO22G02220.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G02220.2.cds1NO22G02220.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G02220.2 ID=NO22G02220.2|Name=NO22G02220.2|organism=Nannochloropsis oceanica|type=mRNA|length=3183bp
AAGATTGGCAGGAAGGGCGGGAGGGGAGGGGATCGACTATGAGGACTATG
AGCATAGGAAATCAATGATGATGGTGGTGGATGAGGGCACAGCAGAAAAC
ACCCGGCCCCAAAGGATGAACAGCAATCAGCGTGCCGAGAATAAGATGCT
GCTGTAGCCTAGTCTGAGAGGTCTTAAGCAAGAAAATTGCCTCTGGCCCT
TGGCATGCATTGCCGTGCTTGTAACCAGCCGCAATGAGATAGAGGGCGCG
TTGCAATAGTGAGGTAGGAACAAATTAATTGATCACAACCCAAAATCAAC
CCGCGCCTGGCAACATCCGCGCCCTTCAGATGATGCCAATGGTGTGTGGG
AAGATTGGGACTGGAGGGGCAGTGTGAGAGGTTTGTGGCGAAAGGGGCAC
CCCCATAGCCAAGCAAGAGGCATCAGCATGTCTGCCAGGCGTCATAATTT
GGAGGAGCCAGCAGTTAACCAGTGTGCCTTGATGAGCCTAGTTCAATGGA
CCCGGGGCCACCACATGTCTGGCAACATAAATTTAGCTGTGTAATGCGGA
AGGGAAGATGCAGGTGGTCGGGAAAGGCGGGAGTGTGGTGGTTGCGAGAG
GGTGGGTGGAGGGGCAAATAAATTGGAAAAGCCAGGCCTGGCTGCATCTC
TGAGATGACGTCCAACGCCTGCTTTCAGAAGAAGTTCTTCGCAAGAACTT
TTGCCTGCGGTCTAACATCAGGTTTTCTCAGTTCAGCGCCAAATTGTCAG
AGTGTGACAGTCAGCATAAAATTTCAGCTCGTATGTATGTTATCCCAGAA
CGCAGCAGCATGCAGCATGAGCCAGGCATTGTCACGCTCGCCATCTCCTC
CCTCGGTCTGCAATATTCGTGCGCTTGCCTTCCGCGCTGGCCTTTCCTAA
CTCCATTCGGTAGACCCTAACCAAAGACACGCTACATAATCGACCTCAAT
CGTACACAGAGGGAGTAACAATCCTAGCTGGGGTTCACATCAAGGGTTTT
TTGGTTGTCTTGACACGTTTTCCTCGACATCGAGCGCGCCTCTAGGAAGC
AGTAGACCCCCGGCCCTTGTCGTTCTCCTCATTTGAGTCCCGAGCCTTCA
TGGAGAGCAATCTTATTTCATAATTTCCAGTCTTATGTGATAATTACCCG
ATTCTTGTCAAAGTCCTCATCACCCTTTCTGTCGCTTTTGGCCCTACTGA
CCCAACCCGTCGTTTTCTACCCTCTCTCGCTCCTTCGCTCAACTTCCTCC
CTCAAGACAGAAATATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCT
AGCCCTCCCTCGTTATTCACCTCATCGAGAGACTGGTATGCGAATTGGTG
CATGACCACGCCGTTTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCC
TCTACCTCTTCTCCTGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATT
CCATACCTGACCATCTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCC
CTTCTACACGGAGGGGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGG
GGGGAATGGGCGCAACTCTTGAGCAGGCGAAAGGCAGTACTTCCTTTTTC
TGCTTGATGGCCGTCATCTCCCTCATTACCAACTTTCTCTTCCTCCTCGT
CTGCCTCCTCCTCTCTCTCGTCATGCCCTCTGCCTTATTCTACTCCGCAG
GCTCCTTTTGGATGATCGTCATGGGGGTCATGACTGGTAGGTGTTCCGGC
AGGGAAGGGGAGGTATTGAAGGAAGGAGAGGAAGGCGGCTTGGATGATCG
TATCCAGCCAGTTACGGATGATCTCTGGGGAGGCGAAGTGGGTCATTCAT
TTCCACCGTGCTGATTATCCATCCCACCCCTCTTCCCTTGCTTTATCTCA
CATTTTCCTCCCCGTATCTTTCATCGTAGTCGATTGCCTTGCCTCCGGTA
TACCCACCCGCCGGCTCTTCATGCTGCCCTACCATATCCCCTCGCTCTAC
TTCCCTCTCCTTCTCTTACTCCTCTTCTCACTCTTCGCTGGCCCTCGTCT
CGATCTCGGCCTTGCCGTGGGCGTCGGCTACGGCTGTGCGTGGGGATGGG
CTGACGCATTCCTCCCCGCCCTTCCTTTTCTCACTCGATTGGAGGACGAG
GGAGGGAGGGTGGGAGGGTGGTTGGAGAGGAGGGCGGGCTTTGTGAGCGC
GGCAACGGCCAGGGGGACGCAGGCATGGTTGCCCACAGTGGATCCAGGAG
CAGGAGGGGGAGCTGGGGGAGAGCTGGGAGGCGAAGGAGGTGGGGGAGGA
GGAGGAGGAGGAGGGAGGGGTTTCGGAGTCGCGAGAAATCCGCCCACTAT
TCATAATGGTGGAGGTGGAGGAGGAGGGGCGGCGGTAGGAAAGGCGCTGG
GAGGAAGGGGGGGGGAGGTTACCACCTCGGCATTTCAAGGGAGCGGACAG
ACTTTGGGTGGAGGAGGAGGAGGCGGAGGAGGAAGAGGGGGATTTCTCGG
AATGGGGGGAGGGAGCAGCAATGCCAGCAGTGGCAGAAGCAGCAGTACGA
AGCCGAGCAACCCTAAAGACCTGGCAGCGGCGAGGGCCGCAAAGTTTGGA
GCACCAAATGGACCCATGGCTCCGGCCTCCAATGAAAGTGAGGAGGAGAC
GGCCACGCTATTGCAGCGGTAGAAAGTGAGGAAGGGATGGGAGAAGGCAA
CTGAAAATGTGGGGATTAAAGCCGGGAATAAAGAAATGACATGTGTAGGC
GGCTTTCACACTCCCGTGTCGCCTAGGATGACTTTACGGGAAACGGGATG
GGGGAAGGATGAGAAAGGGAGCGTGGCAAAAGTGGGGAGTGATCACGAAC
AGCCGTAGCATGAGCAGCAACACGCAAACTGATCATGGTCTTCACCACTA
CCAGCTGTGAAAACATCATCAGCATCCGGAGCTCCATCATCTCAGTGACG
ACCGCCGTCTTCCCCTCCTCGTCCACCACCACTACCACCAGTTCCTCGAT
ATTCCACAGGCTTGCAAGATGCAGGCATTGCTTCGCACCGAGGATTTTTC
AAGTAAAGATGCACGAAGGTATGGAGGCAATGGGTACGTGAGATGCACTA
GCTGGTTCCATTTCATGGAAGCCAAGGATTCTACGGCGAGCCTGTCACCC
AATAAATCTAAATAAAATCAAGAAATATCGGTG
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protein sequence of NO22G02220.2

>NO22G02220.2-protein ID=NO22G02220.2-protein|Name=NO22G02220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MIVSSQLRMISGEAKWVIHFHRADYPSHPSSLALSHIFLPVSFIVVDCLA
SGIPTRRLFMLPYHIPSLYFPLLLLLLFSLFAGPRLDLGLAVGVGYGCAW
GWADAFLPALPFLTRLEDEGGRVGGWLERRAGFVSAATARGTQAWLPTVD
PGAGGGAGGELGGEGGGGGGGGGGRGFGVARNPPTIHNGGGGGGGAAVGK
ALGGRGGEVTTSAFQGSGQTLGGGGGGGGGRGGFLGMGGGSSNASSGRSS
STKPSNPKDLAAARAAKFGAPNGPMAPASNESEEETATLLQR*
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mRNA from alignment at chr22:701686..704990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02220.2 ID=NO22G02220.2|Name=NO22G02220.2|organism=Nannochloropsis oceanica|type=mRNA|length=3305bp|location=Sequence derived from alignment at chr22:701686..704990+ (Nannochloropsis oceanica)
AAGATTGGCAGGAAGGGCGGGAGGGGAGGGGATCGACTATGAGGACTATG
AGCATAGGAAATCAATGATGATGGTGGTGGATGAGGGCACAGCAGAAAAC
ACCCGGCCCCAAAGGATGAACAGCAATCAGCGTGCCGAGAATAAGATGCT
GCTGTAGCCTAGTCTGAGAGGTCTTAAGCAAGAAAATTGCCTCTGGCCCT
TGGCATGCATTGCCGTGCTTGTAACCAGCCGCAATGAGATAGAGGGCGCG
TTGCAATAGTGAGGTAGGAACAAATTAATTGATCACAACCCAAAATCAAC
CCGCGCCTGGCAACATCCGCGCCCTTCAGATGATGCCAATGGTGTGTGGG
AAGATTGGGACTGGAGGGGCAGTGTGAGAGGTTTGTGGCGAAAGGGGCAC
CCCCATAGCCAAGCAAGAGGCATCAGCATGTCTGCCAGGCGTCATAATTT
GGAGGAGCCAGCAGTTAACCAGTGTGCCTTGATGAGCCTAGTTCAATGGA
CCCGGGGCCACCACATGTCTGGCAACATAAATTTAGCTGTGTAATGCGGA
AGGGAAGATGCAGGTGGTCGGGAAAGGCGGGAGTGTGGTGGTTGCGAGAG
GGTGGGTGGAGGGGCAAATAAATTGGAAAAGCCAGGCCTGGCTGCATCTC
TGAGATGACGTCCAACGCCTGCTTTCAGAAGAAGTTCTTCGCAAGAACTT
TTGCCTGCGGTCTAACATCAGGTTTTCTCAGTTCAGCGCCAAATTGTCAG
AGTGTGACAGTCAGCATAAAATTTCAGCTCGTATGTATGTTATCCCAGAA
CGCAGCAGCATGCAGCATGAGCCAGGCATTGTCACGCTCGCCATCTCCTC
CCTCGGTCTGCAATATTCGTGCGCTTGCCTTCCGCGCTGGCCTTTCCTAA
CTCCATTCGGTAGACCCTAACCAAAGACACGCTACATAATCGACCTCAAT
CGTACACAGAGGGAGTAACAATCCTAGCTGGGGTTCACATCAAGGGTTTT
TTGGTTGTCTTGACACGTTTTCCTCGACATCGAGCGCGCCTCTAGGAAGC
AGTAGACCCCCGGCCCTTGTCGTTCTCCTCATTTGAGTCCCGAGCCTTCA
TGGAGAGCAATCTTATTTCATAATTTCCAGTCTTATGTGATAATTACCCG
ATTCTTGTCAAAGTCCTCATCACCCTTTCTGTCGCTTTTGGCCCTACTGA
CCCAACCCGTCGTTTTCTACCCTCTCTCGCTCCTTCGCTCAACTTCCTCC
CTCAAGACAGAAATATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCT
AGCCCTCCCTCGTTATTCACCTCATCGAGAGACTGGTATGCGAATTGGTG
CATGACCACGCCGTTTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCC
TCTACCTCTTCTCCTGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATT
CCATACCTGACCATCTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCC
CTTCTACACGGAGGGGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGG
GGGGAATGGGCGCAACTCTTGAGCAGGTAGGGAAGGAGGGAGGGAGAAAG
TGGCCTCGATTAGATGCGATTGTCACTTTTTCTTCTTCTCCTGCGATCTC
TTTTAAATTTCGGCATGTTTCTCACTCCCTGTCCCTTCTACATCGCAGGC
GAAAGGCAGTACTTCCTTTTTCTGCTTGATGGCCGTCATCTCCCTCATTA
CCAACTTTCTCTTCCTCCTCGTCTGCCTCCTCCTCTCTCTCGTCATGCCC
TCTGCCTTATTCTACTCCGCAGGCTCCTTTTGGATGATCGTCATGGGGGT
CATGACTGGTAGGTGTTCCGGCAGGGAAGGGGAGGTATTGAAGGAAGGAG
AGGAAGGCGGCTTGGATGATCGTATCCAGCCAGTTACGGATGATCTCTGG
GGAGGCGAAGTGGGTCATTCATTTCCACCGTGCTGATTATCCATCCCACC
CCTCTTCCCTTGCTTTATCTCACATTTTCCTCCCCGTATCTTTCATCGTA
GTCGATTGCCTTGCCTCCGGTATACCCACCCGCCGGCTCTTCATGCTGCC
CTACCATATCCCCTCGCTCTACTTCCCTCTCCTTCTCTTACTCCTCTTCT
CACTCTTCGCTGGCCCTCGTCTCGATCTCGGCCTTGCCGTGGGCGTCGGC
TACGGCTGTGCGTGGGGATGGGCTGACGCATTCCTCCCCGCCCTTCCTTT
TCTCACTCGATTGGAGGACGAGGGAGGGAGGGTGGGAGGGTGGTTGGAGA
GGAGGGCGGGCTTTGTGAGCGCGGCAACGGCCAGGGGGACGCAGGCATGG
TTGCCCACAGTGGATCCAGGAGCAGGAGGGGGAGCTGGGGGAGAGCTGGG
AGGCGAAGGAGGTGGGGGAGGAGGAGGAGGAGGAGGGAGGGGTTTCGGAG
TCGCGAGAAATCCGCCCACTATTCATAATGGTGGAGGTGGAGGAGGAGGG
GCGGCGGTAGGAAAGGCGCTGGGAGGAAGGGGGGGGGAGGTTACCACCTC
GGCATTTCAAGGGAGCGGACAGACTTTGGGTGGAGGAGGAGGAGGCGGAG
GAGGAAGAGGGGGATTTCTCGGAATGGGGGGAGGGAGCAGCAATGCCAGC
AGTGGCAGAAGCAGCAGTACGAAGCCGAGCAACCCTAAAGACCTGGCAGC
GGCGAGGGCCGCAAAGTTTGGAGCACCAAATGGACCCATGGCTCCGGCCT
CCAATGAAAGTGAGGAGGAGACGGCCACGCTATTGCAGCGGTAGAAAGTG
AGGAAGGGATGGGAGAAGGCAACTGAAAATGTGGGGATTAAAGCCGGGAA
TAAAGAAATGACATGTGTAGGCGGCTTTCACACTCCCGTGTCGCCTAGGA
TGACTTTACGGGAAACGGGATGGGGGAAGGATGAGAAAGGGAGCGTGGCA
AAAGTGGGGAGTGATCACGAACAGCCGTAGCATGAGCAGCAACACGCAAA
CTGATCATGGTCTTCACCACTACCAGCTGTGAAAACATCATCAGCATCCG
GAGCTCCATCATCTCAGTGACGACCGCCGTCTTCCCCTCCTCGTCCACCA
CCACTACCACCAGTTCCTCGATATTCCACAGGCTTGCAAGATGCAGGCAT
TGCTTCGCACCGAGGATTTTTCAAGTAAAGATGCACGAAGGTATGGAGGC
AATGGGTACGTGAGATGCACTAGCTGGTTCCATTTCATGGAAGCCAAGGA
TTCTACGGCGAGCCTGTCACCCAATAAATCTAAATAAAATCAAGAAATAT
CGGTG
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Coding sequence (CDS) from alignment at chr22:701686..704990+

>NO22G02220.2 ID=NO22G02220.2|Name=NO22G02220.2|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr22:701686..704990+ (Nannochloropsis oceanica)
ATGATCGTATCCAGCCAGTTACGGATGATCTCTGGGGAGGCGAAGTGGGT
CATTCATTTCCACCGTGCTGATTATCCATCCCACCCCTCTTCCCTTGCTT
TATCTCACATTTTCCTCCCCGTATCTTTCATCGTAGTCGATTGCCTTGCC
TCCGGTATACCCACCCGCCGGCTCTTCATGCTGCCCTACCATATCCCCTC
GCTCTACTTCCCTCTCCTTCTCTTACTCCTCTTCTCACTCTTCGCTGGCC
CTCGTCTCGATCTCGGCCTTGCCGTGGGCGTCGGCTACGGCTGTGCGTGG
GGATGGGCTGACGCATTCCTCCCCGCCCTTCCTTTTCTCACTCGATTGGA
GGACGAGGGAGGGAGGGTGGGAGGGTGGTTGGAGAGGAGGGCGGGCTTTG
TGAGCGCGGCAACGGCCAGGGGGACGCAGGCATGGTTGCCCACAGTGGAT
CCAGGAGCAGGAGGGGGAGCTGGGGGAGAGCTGGGAGGCGAAGGAGGTGG
GGGAGGAGGAGGAGGAGGAGGGAGGGGTTTCGGAGTCGCGAGAAATCCGC
CCACTATTCATAATGGTGGAGGTGGAGGAGGAGGGGCGGCGGTAGGAAAG
GCGCTGGGAGGAAGGGGGGGGGAGGTTACCACCTCGGCATTTCAAGGGAG
CGGACAGACTTTGGGTGGAGGAGGAGGAGGCGGAGGAGGAAGAGGGGGAT
TTCTCGGAATGGGGGGAGGGAGCAGCAATGCCAGCAGTGGCAGAAGCAGC
AGTACGAAGCCGAGCAACCCTAAAGACCTGGCAGCGGCGAGGGCCGCAAA
GTTTGGAGCACCAAATGGACCCATGGCTCCGGCCTCCAATGAAAGTGAGG
AGGAGACGGCCACGCTATTGCAGCGGTAG
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Synonyms
Publications