NO22G02220.1, NO22G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G02220.1
Unique NameNO22G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2990
Alignment locationchr22:701686..704990 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:701686..704990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G02220.1 vs.
Match: XP_005855643.1 (hypothetical protein NGA_0645800, partial [Nannochloropsis gaditana CCMP526]; EKU20709.1 hypothetical protein NGA_0645800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 361.7 bits (927), Expect = 3.000e-96
Identity = 184/260 (70.77%), Postives = 211/260 (81.15%), Query Frame = 0 
Query:    2 SSGGPASATGPSPPSLFTSSRDWYANWCMTTPFVARSTLHLLLALYLFSWLVDLAPYVSNIPYLTIYKFQLWRPFLSPFYTEGLLSVVFLCLSLGGMGATLEQAKGSTSFFCLMAVISLITNFLFLLVCLLLSLVMPSALFYSAGSFWMIVMGVMTVDCLASGIPTRRLFMLPYHIPSLYFPLLLLLLFSLFAGPRLDLGLAVGVGYGCAWGWADAFLPALPFLTRLEDEGGRVGGWLERRAGFVSAATARGTQAWLPTV 262
            SS  P+  T PSP     S ++WY NWC +TPF+ RSTLHLLLALY  SW+VDL  Y++NIPY++IYK QLWRPFLSPFYTEGLLSV+FLCLSLGGM  TLEQAKGSTSF CLMA IS +TNFLFLL+CLLLS++ PSAL+ SAGSFW++V+G++TVDCLAS +PTR+LF LP  IPSLYFPLLL LLFSLFAGPRLDLGLAVGVGY   WG+ D  LP L  LTR E+  GR+G WL  R GFVSAA ARG +AWLPTV
Sbjct:    3 SSAPPSGGTAPSP---IASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEE--GRIGSWLGSRTGFVSAAAARGAEAWLPTV 257
The following BLAST results are available for this feature:
BLAST of NO22G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855643.13.000e-9670.77hypothetical protein NGA_0645800, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G02220NO22G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G02220.1NO22G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G02220.1.cds1NO22G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02220.1.cds2NO22G02220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G02220.1.cds3NO22G02220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G02220.1 ID=NO22G02220.1|Name=NO22G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2990bp
AAGATTGGCAGGAAGGGCGGGAGGGGAGGGGATCGACTATGAGGACTATG
AGCATAGGAAATCAATGATGATGGTGGTGGATGAGGGCACAGCAGAAAAC
ACCCGGCCCCAAAGGATGAACAGCAATCAGCGTGCCGAGAATAAGATGCT
GCTGTAGCCTAGTCTGAGAGGTCTTAAGCAAGAAAATTGCCTCTGGCCCT
TGGCATGCATTGCCGTGCTTGTAACCAGCCGCAATGAGATAGAGGGCGCG
TTGCAATAGTGAGGTAGGAACAAATTAATTGATCACAACCCAAAATCAAC
CCGCGCCTGGCAACATCCGCGCCCTTCAGATGATGCCAATGGTGTGTGGG
AAGATTGGGACTGGAGGGGCAGTGTGAGAGGTTTGTGGCGAAAGGGGCAC
CCCCATAGCCAAGCAAGAGGCATCAGCATGTCTGCCAGGCGTCATAATTT
GGAGGAGCCAGCAGTTAACCAGTGTGCCTTGATGAGCCTAGTTCAATGGA
CCCGGGGCCACCACATGTCTGGCAACATAAATTTAGCTGTGTAATGCGGA
AGGGAAGATGCAGGTGGTCGGGAAAGGCGGGAGTGTGGTGGTTGCGAGAG
GGTGGGTGGAGGGGCAAATAAATTGGAAAAGCCAGGCCTGGCTGCATCTC
TGAGATGACGTCCAACGCCTGCTTTCAGAAGAAGTTCTTCGCAAGAACTT
TTGCCTGCGGTCTAACATCAGGTTTTCTCAGTTCAGCGCCAAATTGTCAG
AGTGTGACAGTCAGCATAAAATTTCAGCTCGTATGTATGTTATCCCAGAA
CGCAGCAGCATGCAGCATGAGCCAGGCATTGTCACGCTCGCCATCTCCTC
CCTCGGTCTGCAATATTCGTGCGCTTGCCTTCCGCGCTGGCCTTTCCTAA
CTCCATTCGGTAGACCCTAACCAAAGACACGCTACATAATCGACCTCAAT
CGTACACAGAGGGAGTAACAATCCTAGCTGGGGTTCACATCAAGGGTTTT
TTGGTTGTCTTGACACGTTTTCCTCGACATCGAGCGCGCCTCTAGGAAGC
AGTAGACCCCCGGCCCTTGTCGTTCTCCTCATTTGAGTCCCGAGCCTTCA
TGGAGAGCAATCTTATTTCATAATTTCCAGTCTTATGTGATAATTACCCG
ATTCTTGTCAAAGTCCTCATCACCCTTTCTGTCGCTTTTGGCCCTACTGA
CCCAACCCGTCGTTTTCTACCCTCTCTCGCTCCTTCGCTCAACTTCCTCC
CTCAAGACAGAAATATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCT
AGCCCTCCCTCGTTATTCACCTCATCGAGAGACTGGTATGCGAATTGGTG
CATGACCACGCCGTTTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCC
TCTACCTCTTCTCCTGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATT
CCATACCTGACCATCTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCC
CTTCTACACGGAGGGGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGG
GGGGAATGGGCGCAACTCTTGAGCAGGCGAAAGGCAGTACTTCCTTTTTC
TGCTTGATGGCCGTCATCTCCCTCATTACCAACTTTCTCTTCCTCCTCGT
CTGCCTCCTCCTCTCTCTCGTCATGCCCTCTGCCTTATTCTACTCCGCAG
GCTCCTTTTGGATGATCGTCATGGGGGTCATGACTGTCGATTGCCTTGCC
TCCGGTATACCCACCCGCCGGCTCTTCATGCTGCCCTACCATATCCCCTC
GCTCTACTTCCCTCTCCTTCTCTTACTCCTCTTCTCACTCTTCGCTGGCC
CTCGTCTCGATCTCGGCCTTGCCGTGGGCGTCGGCTACGGCTGTGCGTGG
GGATGGGCTGACGCATTCCTCCCCGCCCTTCCTTTTCTCACTCGATTGGA
GGACGAGGGAGGGAGGGTGGGAGGGTGGTTGGAGAGGAGGGCGGGCTTTG
TGAGCGCGGCAACGGCCAGGGGGACGCAGGCATGGTTGCCCACAGTGGAT
CCAGGAGCAGGAGGGGGAGCTGGGGGAGAGCTGGGAGGCGAAGGAGGTGG
GGGAGGAGGAGGAGGAGGAGGGAGGGGTTTCGGAGTCGCGAGAAATCCGC
CCACTATTCATAATGGTGGAGGTGGAGGAGGAGGGGCGGCGGTAGGAAAG
GCGCTGGGAGGAAGGGGGGGGGAGGTTACCACCTCGGCATTTCAAGGGAG
CGGACAGACTTTGGGTGGAGGAGGAGGAGGCGGAGGAGGAAGAGGGGGAT
TTCTCGGAATGGGGGGAGGGAGCAGCAATGCCAGCAGTGGCAGAAGCAGC
AGTACGAAGCCGAGCAACCCTAAAGACCTGGCAGCGGCGAGGGCCGCAAA
GTTTGGAGCACCAAATGGACCCATGGCTCCGGCCTCCAATGAAAGTGAGG
AGGAGACGGCCACGCTATTGCAGCGGTAGAAAGTGAGGAAGGGATGGGAG
AAGGCAACTGAAAATGTGGGGATTAAAGCCGGGAATAAAGAAATGACATG
TGTAGGCGGCTTTCACACTCCCGTGTCGCCTAGGATGACTTTACGGGAAA
CGGGATGGGGGAAGGATGAGAAAGGGAGCGTGGCAAAAGTGGGGAGTGAT
CACGAACAGCCGTAGCATGAGCAGCAACACGCAAACTGATCATGGTCTTC
ACCACTACCAGCTGTGAAAACATCATCAGCATCCGGAGCTCCATCATCTC
AGTGACGACCGCCGTCTTCCCCTCCTCGTCCACCACCACTACCACCAGTT
CCTCGATATTCCACAGGCTTGCAAGATGCAGGCATTGCTTCGCACCGAGG
ATTTTTCAAGTAAAGATGCACGAAGGTATGGAGGCAATGGGTACGTGAGA
TGCACTAGCTGGTTCCATTTCATGGAAGCCAAGGATTCTACGGCGAGCCT
GTCACCCAATAAATCTAAATAAAATCAAGAAATATCGGTG
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protein sequence of NO22G02220.1

>NO22G02220.1-protein ID=NO22G02220.1-protein|Name=NO22G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MSSGGPASATGPSPPSLFTSSRDWYANWCMTTPFVARSTLHLLLALYLFS
WLVDLAPYVSNIPYLTIYKFQLWRPFLSPFYTEGLLSVVFLCLSLGGMGA
TLEQAKGSTSFFCLMAVISLITNFLFLLVCLLLSLVMPSALFYSAGSFWM
IVMGVMTVDCLASGIPTRRLFMLPYHIPSLYFPLLLLLLFSLFAGPRLDL
GLAVGVGYGCAWGWADAFLPALPFLTRLEDEGGRVGGWLERRAGFVSAAT
ARGTQAWLPTVDPGAGGGAGGELGGEGGGGGGGGGGRGFGVARNPPTIHN
GGGGGGGAAVGKALGGRGGEVTTSAFQGSGQTLGGGGGGGGGRGGFLGMG
GGSSNASSGRSSSTKPSNPKDLAAARAAKFGAPNGPMAPASNESEEETAT
LLQR*
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mRNA from alignment at chr22:701686..704990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G02220.1 ID=NO22G02220.1|Name=NO22G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3305bp|location=Sequence derived from alignment at chr22:701686..704990+ (Nannochloropsis oceanica)
AAGATTGGCAGGAAGGGCGGGAGGGGAGGGGATCGACTATGAGGACTATG
AGCATAGGAAATCAATGATGATGGTGGTGGATGAGGGCACAGCAGAAAAC
ACCCGGCCCCAAAGGATGAACAGCAATCAGCGTGCCGAGAATAAGATGCT
GCTGTAGCCTAGTCTGAGAGGTCTTAAGCAAGAAAATTGCCTCTGGCCCT
TGGCATGCATTGCCGTGCTTGTAACCAGCCGCAATGAGATAGAGGGCGCG
TTGCAATAGTGAGGTAGGAACAAATTAATTGATCACAACCCAAAATCAAC
CCGCGCCTGGCAACATCCGCGCCCTTCAGATGATGCCAATGGTGTGTGGG
AAGATTGGGACTGGAGGGGCAGTGTGAGAGGTTTGTGGCGAAAGGGGCAC
CCCCATAGCCAAGCAAGAGGCATCAGCATGTCTGCCAGGCGTCATAATTT
GGAGGAGCCAGCAGTTAACCAGTGTGCCTTGATGAGCCTAGTTCAATGGA
CCCGGGGCCACCACATGTCTGGCAACATAAATTTAGCTGTGTAATGCGGA
AGGGAAGATGCAGGTGGTCGGGAAAGGCGGGAGTGTGGTGGTTGCGAGAG
GGTGGGTGGAGGGGCAAATAAATTGGAAAAGCCAGGCCTGGCTGCATCTC
TGAGATGACGTCCAACGCCTGCTTTCAGAAGAAGTTCTTCGCAAGAACTT
TTGCCTGCGGTCTAACATCAGGTTTTCTCAGTTCAGCGCCAAATTGTCAG
AGTGTGACAGTCAGCATAAAATTTCAGCTCGTATGTATGTTATCCCAGAA
CGCAGCAGCATGCAGCATGAGCCAGGCATTGTCACGCTCGCCATCTCCTC
CCTCGGTCTGCAATATTCGTGCGCTTGCCTTCCGCGCTGGCCTTTCCTAA
CTCCATTCGGTAGACCCTAACCAAAGACACGCTACATAATCGACCTCAAT
CGTACACAGAGGGAGTAACAATCCTAGCTGGGGTTCACATCAAGGGTTTT
TTGGTTGTCTTGACACGTTTTCCTCGACATCGAGCGCGCCTCTAGGAAGC
AGTAGACCCCCGGCCCTTGTCGTTCTCCTCATTTGAGTCCCGAGCCTTCA
TGGAGAGCAATCTTATTTCATAATTTCCAGTCTTATGTGATAATTACCCG
ATTCTTGTCAAAGTCCTCATCACCCTTTCTGTCGCTTTTGGCCCTACTGA
CCCAACCCGTCGTTTTCTACCCTCTCTCGCTCCTTCGCTCAACTTCCTCC
CTCAAGACAGAAATATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCT
AGCCCTCCCTCGTTATTCACCTCATCGAGAGACTGGTATGCGAATTGGTG
CATGACCACGCCGTTTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCC
TCTACCTCTTCTCCTGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATT
CCATACCTGACCATCTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCC
CTTCTACACGGAGGGGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGG
GGGGAATGGGCGCAACTCTTGAGCAGGTAGGGAAGGAGGGAGGGAGAAAG
TGGCCTCGATTAGATGCGATTGTCACTTTTTCTTCTTCTCCTGCGATCTC
TTTTAAATTTCGGCATGTTTCTCACTCCCTGTCCCTTCTACATCGCAGGC
GAAAGGCAGTACTTCCTTTTTCTGCTTGATGGCCGTCATCTCCCTCATTA
CCAACTTTCTCTTCCTCCTCGTCTGCCTCCTCCTCTCTCTCGTCATGCCC
TCTGCCTTATTCTACTCCGCAGGCTCCTTTTGGATGATCGTCATGGGGGT
CATGACTGGTAGGTGTTCCGGCAGGGAAGGGGAGGTATTGAAGGAAGGAG
AGGAAGGCGGCTTGGATGATCGTATCCAGCCAGTTACGGATGATCTCTGG
GGAGGCGAAGTGGGTCATTCATTTCCACCGTGCTGATTATCCATCCCACC
CCTCTTCCCTTGCTTTATCTCACATTTTCCTCCCCGTATCTTTCATCGTA
GTCGATTGCCTTGCCTCCGGTATACCCACCCGCCGGCTCTTCATGCTGCC
CTACCATATCCCCTCGCTCTACTTCCCTCTCCTTCTCTTACTCCTCTTCT
CACTCTTCGCTGGCCCTCGTCTCGATCTCGGCCTTGCCGTGGGCGTCGGC
TACGGCTGTGCGTGGGGATGGGCTGACGCATTCCTCCCCGCCCTTCCTTT
TCTCACTCGATTGGAGGACGAGGGAGGGAGGGTGGGAGGGTGGTTGGAGA
GGAGGGCGGGCTTTGTGAGCGCGGCAACGGCCAGGGGGACGCAGGCATGG
TTGCCCACAGTGGATCCAGGAGCAGGAGGGGGAGCTGGGGGAGAGCTGGG
AGGCGAAGGAGGTGGGGGAGGAGGAGGAGGAGGAGGGAGGGGTTTCGGAG
TCGCGAGAAATCCGCCCACTATTCATAATGGTGGAGGTGGAGGAGGAGGG
GCGGCGGTAGGAAAGGCGCTGGGAGGAAGGGGGGGGGAGGTTACCACCTC
GGCATTTCAAGGGAGCGGACAGACTTTGGGTGGAGGAGGAGGAGGCGGAG
GAGGAAGAGGGGGATTTCTCGGAATGGGGGGAGGGAGCAGCAATGCCAGC
AGTGGCAGAAGCAGCAGTACGAAGCCGAGCAACCCTAAAGACCTGGCAGC
GGCGAGGGCCGCAAAGTTTGGAGCACCAAATGGACCCATGGCTCCGGCCT
CCAATGAAAGTGAGGAGGAGACGGCCACGCTATTGCAGCGGTAGAAAGTG
AGGAAGGGATGGGAGAAGGCAACTGAAAATGTGGGGATTAAAGCCGGGAA
TAAAGAAATGACATGTGTAGGCGGCTTTCACACTCCCGTGTCGCCTAGGA
TGACTTTACGGGAAACGGGATGGGGGAAGGATGAGAAAGGGAGCGTGGCA
AAAGTGGGGAGTGATCACGAACAGCCGTAGCATGAGCAGCAACACGCAAA
CTGATCATGGTCTTCACCACTACCAGCTGTGAAAACATCATCAGCATCCG
GAGCTCCATCATCTCAGTGACGACCGCCGTCTTCCCCTCCTCGTCCACCA
CCACTACCACCAGTTCCTCGATATTCCACAGGCTTGCAAGATGCAGGCAT
TGCTTCGCACCGAGGATTTTTCAAGTAAAGATGCACGAAGGTATGGAGGC
AATGGGTACGTGAGATGCACTAGCTGGTTCCATTTCATGGAAGCCAAGGA
TTCTACGGCGAGCCTGTCACCCAATAAATCTAAATAAAATCAAGAAATAT
CGGTG
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Coding sequence (CDS) from alignment at chr22:701686..704990+

>NO22G02220.1 ID=NO22G02220.1|Name=NO22G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr22:701686..704990+ (Nannochloropsis oceanica)
ATGTCCTCCGGCGGCCCCGCTTCCGCCACGGGGCCTAGCCCTCCCTCGTT
ATTCACCTCATCGAGAGACTGGTATGCGAATTGGTGCATGACCACGCCGT
TTGTGGCTCGAAGCACGCTGCACTTGCTCTTGGCCCTCTACCTCTTCTCC
TGGCTGGTGGACTTGGCGCCTTACGTGAGCAACATTCCATACCTGACCAT
CTACAAGTTTCAACTCTGGCGGCCCTTCCTCTCCCCCTTCTACACGGAGG
GGCTGCTCTCAGTGGTATTTCTGTGCCTGTCTTTGGGGGGAATGGGCGCA
ACTCTTGAGCAGGCGAAAGGCAGTACTTCCTTTTTCTGCTTGATGGCCGT
CATCTCCCTCATTACCAACTTTCTCTTCCTCCTCGTCTGCCTCCTCCTCT
CTCTCGTCATGCCCTCTGCCTTATTCTACTCCGCAGGCTCCTTTTGGATG
ATCGTCATGGGGGTCATGACTGTCGATTGCCTTGCCTCCGGTATACCCAC
CCGCCGGCTCTTCATGCTGCCCTACCATATCCCCTCGCTCTACTTCCCTC
TCCTTCTCTTACTCCTCTTCTCACTCTTCGCTGGCCCTCGTCTCGATCTC
GGCCTTGCCGTGGGCGTCGGCTACGGCTGTGCGTGGGGATGGGCTGACGC
ATTCCTCCCCGCCCTTCCTTTTCTCACTCGATTGGAGGACGAGGGAGGGA
GGGTGGGAGGGTGGTTGGAGAGGAGGGCGGGCTTTGTGAGCGCGGCAACG
GCCAGGGGGACGCAGGCATGGTTGCCCACAGTGGATCCAGGAGCAGGAGG
GGGAGCTGGGGGAGAGCTGGGAGGCGAAGGAGGTGGGGGAGGAGGAGGAG
GAGGAGGGAGGGGTTTCGGAGTCGCGAGAAATCCGCCCACTATTCATAAT
GGTGGAGGTGGAGGAGGAGGGGCGGCGGTAGGAAAGGCGCTGGGAGGAAG
GGGGGGGGAGGTTACCACCTCGGCATTTCAAGGGAGCGGACAGACTTTGG
GTGGAGGAGGAGGAGGCGGAGGAGGAAGAGGGGGATTTCTCGGAATGGGG
GGAGGGAGCAGCAATGCCAGCAGTGGCAGAAGCAGCAGTACGAAGCCGAG
CAACCCTAAAGACCTGGCAGCGGCGAGGGCCGCAAAGTTTGGAGCACCAA
ATGGACCCATGGCTCCGGCCTCCAATGAAAGTGAGGAGGAGACGGCCACG
CTATTGCAGCGGTAG
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Synonyms
Publications