NO21G00530, NO21G00530 (gene) Nannochloropsis oceanica

Overview
NameNO21G00530
Unique NameNO21G00530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3716
Alignment locationchr21:183594..187309 +

Link to JBrowse

Properties
Property NameValue
DescriptionArmadillo-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:183594..187309 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
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BLAST of NO21G00530 vs. NCBI_GenBank
Match: EWM22552.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 210.7 bits (535), Expect = 2.000e-50
Identity = 186/449 (41.43%), Postives = 213/449 (47.44%), Query Frame = 0 
Query:   65 PRRSSRGSSVQTKATASSLQKRRSIVHTQTLTPGGSSAFK-GSVLPVSHP----HTP-------------------------------ESAGKDLLSSSSPHLSNFPASG-----LSKTRP----------LSISSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISAEEKAMDGAPQGTVYQVKVQTTEECRPSLNXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAILDWAHEYECIDAVRRLCHHPSLGPSLLQPHLPLLLPFLIRSVQNLRSSMQRNALLALRELFNPACLGPAFPPFLGTLCAALLKKLSHGDKKFICQACEDVLEAAIEGGGGATVPFLLPALLPLVKDRNPEMAAASLVWIE 463
            PRR+ + S+  TK TASSLQKRRSIV T TL+PGG+SAFK  S LP S P    H P                               + + K    ++ P ++N P  G     L  + P           SI S                                                  XXXXXXXXXXXXXXXXXXXXXX SA EKAMDGAPQG VYQV+V+ TE+  PSL+                                                                  +   DWA EYECIDA+RRL  HPSLGP+LL+PHLPLLLPFL+RSV NLRSSMQRNALL LRELF PA LGPAFPPFL  +CA LL++L HGDKKFI  ACE VL AA+   GGATVPFL          +  E AA SL+WIE
Sbjct:  154 PRRTPQESTFLTKPTASSLQKRRSIVLTHTLSPGGTSAFKTSSTLPPSPPTLGGHGPRVPIPGPSPHEVTPSVSITSTVLXXXXXXALKGSTKTASPTAMPAVTNTPVRGHQLPPLPSSSPGALPSLASPSRSILSAPISARRAYHRKIDQHLPAGTDSPSTSSSLGTSPNTSVAPGRRKPGPPRPXXXXXXXXXXXXXXXXXXXXXXXSAAEKAMDGAPQGRVYQVQVRNTEDLPPSLH--------------------------------------PALDLDLVLETVKEGDAALHGGQRGEEERGHADWAREYECIDAIRRLALHPSLGPALLRPHLPLLLPFLLRSVHNLRSSMQRNALLCLRELFVPAGLGPAFPPFLEPMCALLLRQLGHGDKKFIRVACEGVLAAAVGAEGGATVPFLXXXXXXXXXAKKAEEAAGSLLWIE 564
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BLAST of NO21G00530 vs. NCBI_GenBank
Match: CBJ31203.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 74.3 bits (181), Expect = 2.200e-9
Identity = 76/263 (28.90%), Postives = 100/263 (38.02%), Query Frame = 0 
Query:  222 ISAEEKAMDGAPQGTVYQVKVQTTEECRPSLNXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAILDWAHEYECIDAVRRLCHHPSLGPSLLQP-------------------HLPLLLPFLIRSVQNLRSSMQRNALLALRELFNPACLGPAFPPFLGTLCAALLKKLSHGDKKFICQACEDVLEAAIEGGGGATVPFLLPALLPLVKDRNPEMAAASLVWIEKAL 466
            +S EE AM GAPQG VYQV V  T +  PS N                                                                      DWA  Y  +D+ RRLC   +    LL P                   +L  ++  L  +V NLRSSM RNALL + ++F            +  + A  L++L+ GDK+FICQ     +EAA   G GA V   L A+LP + DRN E+AA S  + E+ L
Sbjct:  419 LSEEETAMAGAPQGPVYQVAVLETGDFEPSPNPDEEMQAVRAASAGDG------------------------------------------------------DWADLYSAVDSARRLCIFHA--QKLLVPGGQGXXXXXXXXXXXXXXXNLEGVVGLLAAAVGNLRSSMVRNALLGVGDIFR-FLKHDVGRVDISPMIAGTLQRLA-GDKRFICQTAAQAMEAAARNGPGADV---LHAILPSLDDRNAEVAAKSAFYAEQCL 620
The following BLAST results are available for this feature:
BLAST of NO21G00530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Position :
0
Zoom :
x 1
500100015002000250030003500Expect = 2.00e-50 / Id = 41.43Expect = 2.20e-9 / Id = 28.90SequenceEWM22552.1CBJ31203.1
Match NameE-valueIdentityDescription
EWM22552.12.000e-5041.43Armadillo-like helical [Nannochloropsis gaditana][more]
CBJ31203.12.200e-928.90conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004741NSK004741Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00530.1NO21G00530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673995gene_9482Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00530.1NO21G00530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00530 ID=NO21G00530|Name=NO21G00530|organism=Nannochloropsis oceanica|type=gene|length=3716bp
ATGGCTACCCCTGGCGGAAGCGGTAGTTGCACTGGAAGCGGCGGCATATA
TCGCATGCCTGCAAGTCGTGGCATGCCATCACCCTCCTCCTCGTCAGTGC
CCGCGACGCCCACGCCCCCCACTCCTACTCCTGCTGCTGCTCCTGGACTC
ACCACTCCCTCCTCTTCGTCAACCCATAATCGCGGCCACATTCCTCGTCG
CTCTTCGAGAGGAAGCAGCGTCCAAACAAAGGCCACCGCCAGCAGCCTGC
AAAAACGTCGCAGCATTGTGCACACCCAAACACTGACCCCCGGCGGAAGC
AGCGCCTTCAAAGGCAGCGTCCTCCCTGTCTCCCACCCACACACCCCGGA
AAGCGCCGGAAAGGACTTGCTGTCCTCGTCTTCTCCCCATTTATCCAATT
TTCCTGCCTCGGGATTGTCAAAGACACGTCCCTTGTCGATTTCATCCCCA
GGGgtattaatttcctcctcctcaaccacatcctcctcctccacttcaag
gcctggcatgaaggcatcttattctccagcagttcctaccccccccacca
ccagcacgaggacgacaaggaccccgtctgtacaaaagccgctttactcg
cggcatccacagcacgagaaagacctctctcacatccacctgcctaagga
cacgaatagcacttctcacagCAGGCCCGCGCCCACGACCACGGACCCTC
CCCCCCTTCCTCCTCCTCTTCATCCTCCTCATCTATCGCGGCTCGCCAGG
TGAAGCCCCAGCTTCAAGCGGCCGCCTTCGCCGTCGCCCCCTCCACCCTC
GACCTTTCCTCCCTCCCTTCCTCCACCTTCACCTCCACCTCCACCACAAC
TTCCTCCTCCTCCTCGGCCAAGCTCGTCGTCATTTCCGCGGAAGAAAAGG
CGATGGACGGCGCCCCCCAAGGGACCGTGTACCAAGTGAAAGTCCAGACA
ACAGAGGAGTGCCGTCCCTCCCTCAATCCATCCCTCGACCTGAAGCTGGT
GCTGGATACCTTGACGGAGGCACAGGCACGTTCCAATCCGCATTCCCTTC
CTTCCTCCTACCCCTCCTCGTCCTCTGTCACAACTACTGCGGCTCTTGGA
GCAGGAGGTGCAGGGGGCAGAAGGGAAGTAGGGTCTGCTGCTGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGACAAAGCAATCTTAGACTGGGCCCATG
AATACGAATGCATCGACGCCGTCCGCCGCCTGTGCCACCACCCCTCCCTC
GGCCCCTCCCTCCTTCAGCCCCACCTCCCCCTCCTCCTCCCCTTCCTTAT
CCGCTCCGTTCAGAACCTACGTTCAAGTATGCAGCGGAACGCCCTCCTCG
CCCTCCGGGAGCTCTTCAACCCTGCCTGCCTCGGGCCTGCCTTCCCCCCC
TTTCTCGGCACTCTCTGTGCGGCCCTCCTCAAAAAGCTGTCGCATGGAGA
CAAGAAATTCATCTGCCAAGCTTGTGAGGATGTGTTGGAGGCAGCGATCG
AAGGAGGGGGAGGAGCCACCGTGCCCTTCCTCCTTCCCGCCCTCCTCCCT
CTGGTCAAGGACCGCAATCCGGAGATGGCCGCGGCGAGCCTGGTATGGAT
TGAGAAGGCTCTTATGAAAGCTTTGGAGGGAGAAAGGGAGGAAAGGAAGG
AAGACGGTGGCCTGGCAGCGTTGATGGGTGGGATGACCTCCGTCGCTATC
AGTAGCATCAATAACACCAGCAACCACAGCAGCAGCAGTAGCACCCCTCC
TCTCCTCCCCCCCGGGCCAATCGACACCTCCCTCCCCTCCCCTTCCTCCC
TCCCCTCCTTTCTCCATACTCCTGACCCCCCCCTCCTTCCCTCCCTCCTT
CAATCTCTCGGCCTGGGGTATGACCGCTGCAGGTTGGCTCTCGGGAAGAA
GGCCGCCAAGCGTTCTCTTCTCCTCCTGCGCGCACAGATGGATGCTGGAA
CGGAGGAGCGCGAGGGAGGGGGGGGAGGCGAGAAAGAGAGAGAGTCTCCG
GGAAAGGTGGGAGGGAAGGAGGGAGGGTTGTTTGAGAAGGCACTGCGGGC
GACGACCTTGACTAAGGGAGTAGTGGAGGACATTCTGAGGCATACGTCCG
ATGCCGCGACGAAGCGGAAATCCCTCTCTGTGGTGTCCACCCCTGCTTCC
TCCCCCTCGTCCTCGTCCTCGTCCTCGTCCTCGTCCGTCTCGTCGGCCTT
TTCCACGATTGGCTCGTCAACATCTTCTTCTACTACTTTTTCTTCCTCTT
CTACATCCACAGCCACTTCGTTTCGGAGGACGACGGGTGTGGAGGTGAGT
GCGCGGGGAGGGAGGGCAGGTGGAATGTGTGGAGGGAGGGAAGGAGGGAA
CAGTGCTACGCGGACAACATCGGCCTTTCGGCAGCATGTAGCGGTGATGA
AGAGAGGGGGAGGAGGAGGAGGAGGAGGAGGGAGGGGAGAAGGGATGATC
AGTCATCGCAGGCCTCCCTTCTCTTCTTCTTTGTCGTCTTCGTCTGTTGT
AGTGGCTTTACCGCCACCAGCGGTCAGGAAGGGAGAGAGGGAAGGAGGAG
TATTGGTTGGGAACGATGATAGCAGCGTGAGTCGCCCCACCATCAGAAGC
AACAGCAGGGTCGTTGCTACCACTGCCAGCAGCAGCACGACGCCGGACGT
CAAGAGCAAAGAGGAGGAAGGGGAGAAGATTTTGTTGGCCAAAACAAGAG
AACGAACAGGACCAGCAGCAGCGGCAGGAAGACGAACAGCTGCAGCAACA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCAGCCACCGTCGC
AGCAGCAGCAGTAACAGGAGCTGGCGCTTCTGCGACTGCGAGGAGAGGGG
GAGTGAGGGAGGGAGGGAAGGAGAAGAGCACTCCGTCCACGCTTTCCAGC
AAGACAATTAGCTTGAAAGAGGCCCAGGAAAGGGGAGAGGAAATGAAAAA
GGCGAAGGAATGTGGAAACGAAGAGAAAGAGAGGGTGGAAGAAGGGGAAA
AGAGAGAGATTTCTGCTATTGGGTCGTCTCTTGGAGTGGGGGAAATGACG
AGTGTCGTGTGATTCGAGGAGGGAGGGAGAAAGCGGTGTGCATTCGTAGA
GGCATCTAGAGGATGCTTTTATTTGACAACCATAGAGAGAAAATAGTCGA
GAAAGTGAACAGACAGAAGGAAAGAAGACGAAGAACAAGGACAGGCACAA
TAGCAGGCACAGGAACAACAAGATGAAGGGAAAGAAGAGGAAAAACAAGA
AGAACAAGAAATAGAACGAAAAGAAAGGTGAATTGTATTGAAGAACAAGG
AAGTGGAATCGCCGCAGAGGATGAGAGAGGCAGAGAGGGAGGGAGGGCGA
GGACGTTTGCATGTGTCGTGGTCCACTGGGCATAGTAATATGTTGATCGC
AACGCCCGCGGTAACTAAGAGAGAAATTGGGTGGCCTCTGCCTGTGTGCC
CCCCCTTGTGGTGCATATTTTCCCCGTTTCCCCTTAGCAGGATGACATCG
AGGGAGGGAGGTTGGACGTCTTGCAGAGAAGAAAATAGGCATGTTAATGC
GACCGGCGCATGGCACAACAAACGCAAGATGTCACCTGCCCCCGCGACAG
GGCCAAGCTAAGACGAGAGAGAGTGGACGCAAAAGAGGTTAGATGGTCAA
CATACGAAGTAAAAATATAGGAAGGAGAAAGTAAAGCACAAAGCACGCTG
CAGAGACACAAACATT
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protein sequence of NO21G00530.1

>NO21G00530.1-protein ID=NO21G00530.1-protein|Name=NO21G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=948bp
MATPGGSGSCTGSGGIYRMPASRGMPSPSSSSVPATPTPPTPTPAAAPGL
TTPSSSSTHNRGHIPRRSSRGSSVQTKATASSLQKRRSIVHTQTLTPGGS
SAFKGSVLPVSHPHTPESAGKDLLSSSSPHLSNFPASGLSKTRPLSISSP
GQARAHDHGPSPPSSSSSSSSSIAARQVKPQLQAAAFAVAPSTLDLSSLP
SSTFTSTSTTTSSSSSAKLVVISAEEKAMDGAPQGTVYQVKVQTTEECRP
SLNPSLDLKLVLDTLTEAQARSNPHSLPSSYPSSSSVTTTAALGAGGAGG
RREVGSAAGGGGGGGGGGDKAILDWAHEYECIDAVRRLCHHPSLGPSLLQ
PHLPLLLPFLIRSVQNLRSSMQRNALLALRELFNPACLGPAFPPFLGTLC
AALLKKLSHGDKKFICQACEDVLEAAIEGGGGATVPFLLPALLPLVKDRN
PEMAAASLVWIEKALMKALEGEREERKEDGGLAALMGGMTSVAISSINNT
SNHSSSSSTPPLLPPGPIDTSLPSPSSLPSFLHTPDPPLLPSLLQSLGLG
YDRCRLALGKKAAKRSLLLLRAQMDAGTEEREGGGGGEKERESPGKVGGK
EGGLFEKALRATTLTKGVVEDILRHTSDAATKRKSLSVVSTPASSPSSSS
SSSSSSVSSAFSTIGSSTSSSTTFSSSSTSTATSFRRTTGVEVSARGGRA
GGMCGGREGGNSATRTTSAFRQHVAVMKRGGGGGGGGGRGEGMISHRRPP
FSSSLSSSSVVVALPPPAVRKGEREGGVLVGNDDSSVSRPTIRSNSRVVA
TTASSSTTPDVKSKEEEGEKILLAKTRERTGPAAAAGRRTAAATAAAAAA
AAAAAAAATVAAAAVTGAGASATARRGGVREGGKEKSTPSTLSSKTISLK
EAQERGEEMKKAKECGNEEKERVEEGEKREISAIGSSLGVGEMTSVV*
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Synonyms
Publications