NO21G00470, NO21G00470 (gene) Nannochloropsis oceanica

Overview
NameNO21G00470
Unique NameNO21G00470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length604
Alignment locationchr21:166647..167250 +

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin-like-conjugating enzyme ATG3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:166647..167250 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007134Autophagy-rel_prot_3_N
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006914autophagy
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: EJK62643.1 (hypothetical protein THAOC_16735, partial [Thalassiosira oceanica])

HSP 1 Score: 121.7 bits (304), Expect = 1.700e-24
Identity = 58/110 (52.73%), Postives = 71/110 (64.55%), Query Frame = 0 
Query:    6 KGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFEDEXXXXXXXXXXXXXXXGEEKDGVDGAWMATHV 116
            + VREY+ P L  SAFL RGVLTP+EFV+AGD+LVY+CPTW+WE GDP+K K +LP DKQYL TR+VPC  R S  E+                 EE D  DG W+ + V
Sbjct:  837 QSVREYLTPTLKSSAFLSRGVLTPEEFVKAGDELVYKCPTWTWEAGDPNKRKGHLPPDKQYLVTRSVPCTARVSSLEN-------------VVAQEEGDDDDGDWLVSQV 933
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: XP_002900448.1 (autophagocytosis associated protein, putative [Phytophthora infestans T30-4] >EEY60241.1 autophagocytosis associated protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 119.0 bits (297), Expect = 1.100e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFE 83
            M S   GVREY+ PVL +S+F ++G+LTP+EFV+AGD LVY+CPTW WE GDPS  +SYLP DKQ+L TRNVPC +R +  E
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGDPSMRRSYLPADKQFLITRNVPCRRRVTSLE 82
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: XP_008902199.1 (hypothetical protein PPTG_09093 [Phytophthora parasitica INRA-310] >ETI51924.1 hypothetical protein F443_04836 [Phytophthora parasitica P1569] >ETK91793.1 hypothetical protein L915_04707 [Phytophthora parasitica] >ETL45188.1 hypothetical protein L916_04666 [Phytophthora parasitica] >ETL98359.1 hypothetical protein L917_04553 [Phytophthora parasitica] >ETN12200.1 hypothetical protein PPTG_09093 [Phytophthora parasitica INRA-310] >ETO80679.1 hypothetical protein F444_04876 [Phytophthora parasitica P1976] >ETP21700.1 hypothetical protein F441_04833 [Phytophthora parasitica CJ01A1] >ETP49608.1 hypothetical protein F442_04903 [Phytophthora parasitica P10297])

HSP 1 Score: 118.6 bits (296), Expect = 1.500e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFE 83
            M S   GVREY+ PVL +S+F ++G+LTP+EFV+AGD LVY+CPTW WE GDPS  +SYLP DKQ+L TRNVPC +R +  E
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGDPSLRRSYLPADKQFLITRNVPCRRRVTSLE 82
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: ETM51522.1 (hypothetical protein L914_04659 [Phytophthora parasitica])

HSP 1 Score: 118.6 bits (296), Expect = 1.500e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFE 83
            M S   GVREY+ PVL +S+F ++G+LTP+EFV+AGD LVY+CPTW WE GDPS  +SYLP DKQ+L TRNVPC +R +  E
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGDPSLRRSYLPADKQFLITRNVPCRRRVTSLE 82
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: KUF84142.1 (Autophagy-related protein 3 [Phytophthora nicotianae])

HSP 1 Score: 118.6 bits (296), Expect = 1.500e-23
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFE 83
            M S   GVREY+ PVL +S+F ++G+LTP+EFV+AGD LVY+CPTW WE GDPS  +SYLP DKQ+L TRNVPC +R +  E
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGDPSLRRSYLPADKQFLITRNVPCRRRVTSLE 82
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: OWZ03574.1 (Autophagocytosis associated protein [Phytophthora megakarya])

HSP 1 Score: 117.1 bits (292), Expect = 4.300e-23
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFE 83
            M S   GVREY+ PVL +S+F ++G+LTP+EFVQAGD LVY+CPTW WE G+PS  + YLP DKQ+L TRNVPC +R +  E
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVQAGDLLVYKCPTWRWESGEPSLRRPYLPADKQFLVTRNVPCRRRVTSLE 82
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: POM64876.1 (Autophagocytosis associated protein, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 117.1 bits (292), Expect = 4.300e-23
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFE 83
            M S   GVREY+ PVL +S+F ++G+LTP+EFV+AGD LVY+CPTW WE GDPS  + YLP DKQ+L TRNVPC +R +  E
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGDPSLRRPYLPADKQFLVTRNVPCRRRVTSLE 82
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: XP_009532137.1 (hypothetical protein PHYSODRAFT_317232 [Phytophthora sojae] >EGZ11804.1 hypothetical protein PHYSODRAFT_317232 [Phytophthora sojae])

HSP 1 Score: 115.9 bits (289), Expect = 9.500e-23
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRAS 80
            M S   GVREY+ PVL +S+F ++G+LTP+EFV+AGD LVY+CPTW WE G+PS  +SYLP DKQ+L TRNVPC +R +
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGEPSLRRSYLPADKQFLVTRNVPCRRRVT 79
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: XP_024573239.1 (autophagy-related protein 3-like [Plasmopara halstedii] >CEG36870.1 autophagy-related protein 3-like [Plasmopara halstedii])

HSP 1 Score: 115.9 bits (289), Expect = 9.500e-23
Identity = 49/82 (59.76%), Postives = 65/82 (79.27%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFE 83
            M S   GVREY+ PVL +S+F ++G+LTP+EFV+AGD LVY+CPTW WE G+ S+ +SYLP+DKQ+L TRNVPC +R +  E
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGESSQRRSYLPVDKQFLITRNVPCRRRVTSLE 82
[Close]
BLAST of NO21G00470 vs. NCBI_GenBank
Match: XP_002972419.1 (autophagy-related protein 3 isoform X2 [Selaginella moellendorffii] >XP_002984249.1 autophagy-related protein 3 isoform X4 [Selaginella moellendorffii] >EFJ14759.1 hypothetical protein SELMODRAFT_119789 [Selaginella moellendorffii] >EFJ26505.1 hypothetical protein SELMODRAFT_97230 [Selaginella moellendorffii])

HSP 1 Score: 115.5 bits (288), Expect = 1.200e-22
Identity = 58/102 (56.86%), Postives = 67/102 (65.69%), Query Frame = 0 
Query:   19 SAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFEDEXXXXXXXXXXXXXXXGEEKDGVDG-AWMATHVKKGG 120
            SAF+E+GVLTP EFVQAGD LV +CPTWSWE GDPSK K +LP DKQ+L TRNVPC +RA+ FE+E                   DG DG  W+ATH   GG
Sbjct:   25 SAFVEKGVLTPAEFVQAGDNLVAKCPTWSWESGDPSKQKGHLPKDKQFLITRNVPCLRRAAAFEEEYAAAGGEVLL---------DGEDGEGWLATHGAPGG 117
The following BLAST results are available for this feature:
BLAST of NO21G00470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EJK62643.11.700e-2452.73hypothetical protein THAOC_16735, partial [Thalass... [more]
XP_002900448.11.100e-2362.20autophagocytosis associated protein, putative [Phy... [more]
XP_008902199.11.500e-2362.20hypothetical protein PPTG_09093 [Phytophthora para... [more]
ETM51522.11.500e-2362.20hypothetical protein L914_04659 [Phytophthora para... [more]
KUF84142.11.500e-2362.20Autophagy-related protein 3 [Phytophthora nicotian... [more]
OWZ03574.14.300e-2360.98Autophagocytosis associated protein [Phytophthora ... [more]
POM64876.14.300e-2360.98Autophagocytosis associated protein, partial [Phyt... [more]
XP_009532137.19.500e-2362.03hypothetical protein PHYSODRAFT_317232 [Phytophtho... [more]
XP_024573239.19.500e-2359.76autophagy-related protein 3-like [Plasmopara halst... [more]
XP_002972419.11.200e-2256.86autophagy-related protein 3 isoform X2 [Selaginell... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00470.1NO21G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673999gene_9488Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00470.1NO21G00470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00470 ID=NO21G00470|Name=NO21G00470|organism=Nannochloropsis oceanica|type=gene|length=604bp
ATGACGAGCTTTCTCAAAGGTGTTCGGGAATACGTCTACCCTGTGCTAGA
CAAATCTGCCTTTTTAGAGCGgtgagagcttatctgccctccctccctcc
ctccctccctccctcttttcagtctcaccattagtgctccctccagccag
accacctcatccttctgttctgtgctttcctgcattatcatgccccagtc
aaatcaagaccgtcgcaatccagcggcatcctcacttgatcttccctttc
cttctccctcacctacttagAGGCGTGCTCACTCCTCAAGAGTTCGTGCA
AGCCGGAGACCAGCTCGTCTACCGCTGCCCTACCTGGAGCTGGGAAGGTG
GAGATCCGAGCAAGGCGAAGAGTTATTTACCTCTCGACAAGCAATATTTG
CAGACGAGGAATGTGCCGTGTGGGCAGAGGGCAAGTGTGTTTGAGGACGA
ATATGAGGAGGAGGAGGAGGTGGAGGGAGGGATGGAAGGAGGGATGGGGG
AGGAGAAAGATGGGGTGGATGGGGCGTGGATGGCGACGCACGTGAAGAAA
GGAGGGAGGGGGGAAGGAGGAATGGCGGTGAGGAGGAGGAGGAGGGGGTG
GTGA
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protein sequence of NO21G00470.1

>NO21G00470.1-protein ID=NO21G00470.1-protein|Name=NO21G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEG
GDPSKAKSYLPLDKQYLQTRNVPCGQRASVFEDEYEEEEEVEGGMEGGMG
EEKDGVDGAWMATHVKKGGRGEGGMAVRRRRRGW*
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Synonyms
Publications