jgi.p|Nanoce1779_2|673999, gene_9488 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673999
Unique Namegene_9488
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_34:116070..118624 -

Link to JBrowse

Properties
Property NameValue
TranscriptId674085
ProteinId673999
Product nameAutophagocytosis associated protein (Atg3), N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_34supercontigscaffold_34:116070..118624 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0051438regulation of ubiquitin-protein transferase activity
GO:0051443positive regulation of ubiquitin-protein transferase activity
GO:0051444negative regulation of ubiquitin-protein transferase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL052ncniL052Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00470NO21G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673999mRNA_9488-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673999mRNA_9488Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|673999

>mRNA_9488-protein ID=mRNA_9488-protein|Name=jgi.p|Nanoce1779_2|673999|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MSQKMTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTW
SWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFEDEYEEEEEVEGGME
GGMGEEKDGVDGAWMATHVKKGGRGGRRNGGEEEEEGVVITLGRDDGEGE
REGGMLPRREGKGEGAAGEKEEGGNGVLLGGVGSTLKVVDGHFALKEQEG
KEGEVPREGGVEGEGSDEGYADMASYEEAGLGGQEGGEEGREGGEDVAML
PSESLPYMKTEEPQASLVASRSYDISITYDKYYQTPRAWLLGYDEEGQPL
SAPALFEDIQQDYAHRTVTIETHPHTGVPQASIHPCQHANVMKNIVRNLS
QGREGGREGGGATHGPVFVHLFEILAEHDSYD*
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Synonyms
Publications