NO21G00470.1, NO21G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G00470.1
Unique NameNO21G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length405
Alignment locationchr21:166647..167250 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:166647..167250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G00470.1 vs.
Match: XP_002900448.1 (autophagocytosis associated protein, putative [Phytophthora infestans T30-4]; EEY60241.1 autophagocytosis associated protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 127.5 bits (319), Expect = 3.200e-26
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 0 
Query:    1 MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEGGDPSKAKSYLPLDKQYLQTRNVPCGQRASVFEDEYEEEEEVEG 94
            M S   GVREY+ PVL +S+F ++G+LTP+EFV+AGD LVY+CPTW WE GDPS  +SYLP DKQ+L TRNVPC +R +  E  Y+ EE VEG
Sbjct:    1 MQSLFHGVREYLTPVLTESSFEDKGLLTPEEFVKAGDLLVYKCPTWRWESGDPSMRRSYLPADKQFLITRNVPCRRRVTSLEQSYQTEEAVEG 93
The following BLAST results are available for this feature:
BLAST of NO21G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002900448.13.200e-2661.29autophagocytosis associated protein, putative [Phy... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00470NO21G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G00470.1NO21G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G00470.1.cds1NO21G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G00470.1.cds2NO21G00470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G00470.1 ID=NO21G00470.1|Name=NO21G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGACGAGCTTTCTCAAAGGTGTTCGGGAATACGTCTACCCTGTGCTAGA
CAAATCTGCCTTTTTAGAGCGAGGCGTGCTCACTCCTCAAGAGTTCGTGC
AAGCCGGAGACCAGCTCGTCTACCGCTGCCCTACCTGGAGCTGGGAAGGT
GGAGATCCGAGCAAGGCGAAGAGTTATTTACCTCTCGACAAGCAATATTT
GCAGACGAGGAATGTGCCGTGTGGGCAGAGGGCAAGTGTGTTTGAGGACG
AATATGAGGAGGAGGAGGAGGTGGAGGGAGGGATGGAAGGAGGGATGGGG
GAGGAGAAAGATGGGGTGGATGGGGCGTGGATGGCGACGCACGTGAAGAA
AGGAGGGAGGGGGGAAGGAGGAATGGCGGTGAGGAGGAGGAGGAGGGGGT
GGTGA
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protein sequence of NO21G00470.1

>NO21G00470.1-protein ID=NO21G00470.1-protein|Name=NO21G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MTSFLKGVREYVYPVLDKSAFLERGVLTPQEFVQAGDQLVYRCPTWSWEG
GDPSKAKSYLPLDKQYLQTRNVPCGQRASVFEDEYEEEEEVEGGMEGGMG
EEKDGVDGAWMATHVKKGGRGEGGMAVRRRRRGW*
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mRNA from alignment at chr21:166647..167250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00470.1 ID=NO21G00470.1|Name=NO21G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=604bp|location=Sequence derived from alignment at chr21:166647..167250+ (Nannochloropsis oceanica)
ATGACGAGCTTTCTCAAAGGTGTTCGGGAATACGTCTACCCTGTGCTAGA
CAAATCTGCCTTTTTAGAGCGGTGAGAGCTTATCTGCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCTTTTCAGTCTCACCATTAGTGCTCCCTCCAGCCAG
ACCACCTCATCCTTCTGTTCTGTGCTTTCCTGCATTATCATGCCCCAGTC
AAATCAAGACCGTCGCAATCCAGCGGCATCCTCACTTGATCTTCCCTTTC
CTTCTCCCTCACCTACTTAGAGGCGTGCTCACTCCTCAAGAGTTCGTGCA
AGCCGGAGACCAGCTCGTCTACCGCTGCCCTACCTGGAGCTGGGAAGGTG
GAGATCCGAGCAAGGCGAAGAGTTATTTACCTCTCGACAAGCAATATTTG
CAGACGAGGAATGTGCCGTGTGGGCAGAGGGCAAGTGTGTTTGAGGACGA
ATATGAGGAGGAGGAGGAGGTGGAGGGAGGGATGGAAGGAGGGATGGGGG
AGGAGAAAGATGGGGTGGATGGGGCGTGGATGGCGACGCACGTGAAGAAA
GGAGGGAGGGGGGAAGGAGGAATGGCGGTGAGGAGGAGGAGGAGGGGGTG
GTGA
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Coding sequence (CDS) from alignment at chr21:166647..167250+

>NO21G00470.1 ID=NO21G00470.1|Name=NO21G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr21:166647..167250+ (Nannochloropsis oceanica)
ATGACGAGCTTTCTCAAAGGTGTTCGGGAATACGTCTACCCTGTGCTAGA
CAAATCTGCCTTTTTAGAGCGAGGCGTGCTCACTCCTCAAGAGTTCGTGC
AAGCCGGAGACCAGCTCGTCTACCGCTGCCCTACCTGGAGCTGGGAAGGT
GGAGATCCGAGCAAGGCGAAGAGTTATTTACCTCTCGACAAGCAATATTT
GCAGACGAGGAATGTGCCGTGTGGGCAGAGGGCAAGTGTGTTTGAGGACG
AATATGAGGAGGAGGAGGAGGTGGAGGGAGGGATGGAAGGAGGGATGGGG
GAGGAGAAAGATGGGGTGGATGGGGCGTGGATGGCGACGCACGTGAAGAA
AGGAGGGAGGGGGGAAGGAGGAATGGCGGTGAGGAGGAGGAGGAGGGGGT
GGTGA
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Synonyms
Publications