NO21G00260, NO21G00260 (gene) Nannochloropsis oceanica

Overview
NameNO21G00260
Unique NameNO21G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4757
Alignment locationchr21:83614..88370 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:83614..88370 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G00260 vs. NCBI_GenBank
Match: EWM22529.1 (hypothetical protein Naga_100290g6 [Nannochloropsis gaditana])

HSP 1 Score: 805.1 bits (2078), Expect = 3.300e-229
Identity = 544/1229 (44.26%), Postives = 671/1229 (54.60%), Query Frame = 0 
Query:   19 LVAEAERLKQEKGG-LFLLHAEEGYECVTLAAVDTSKGLYV----HPQGAMGII-----EQQQGRWVSWEETRNMAMTRFGGHLPKAASLSSIVDAVKQHQNLGELTHFHEATLLEGIRQGVKQGMTCQQCGPTLVTLGSMDAAVTSDLP-GALPSFLALTSPSPPSVPASTSSLLPVWKSDLNQDLCLAARSEPHPCDALHAAFRQLHTPGAPSHQTLVLLGSASGLADTKTHILQALFEHYRRPAPQLVKRISTAVSLLSTLLVLDDAALLSSPMEIKFFVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEGKLVGAELDVFLIERDPAKYDSLRDALASPQSVQTLGLEGLGLGGREGGIGEXXXXXXXXXXXXXXXXXXSFSVGAPIDGTSLSATALGDLDMGDLSSSLSSSLSGSNHSIFPGSAHPLCRQGEHKGSMTFESLLQSFTDIGLSVANATRILRAMAASIILSKASVPLALPLYRAFDFLGFPAKLTKTAIQRVGSAERDLKQLAREAFTLAIQDLVGLLNSAMAVVPSFSPSSLSC-----ASEKIGTLSVLTIPSPTLSNNLGRFSDLAAALGVIHTMTYIGPRIVQAY--------------GKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE--------------------VNSTADSMYGLAEAVNRSTLARVAESKVERELKASLKLGKADDVTLPWGKTLLAKPLIRLNAAMLPPRLAEMVGCTKRASGADSATVLDGLVAWIDKAVGKE------EGEKKREVRDGEKMMN--PATIEEVEEEEEQVMVEEGVKEEWGRKEGERMENVTGAGDLKGEVGTTFPTFTSVKQNEDNAASTVDKSRAFHLVCALKTNSSPTTFDGMKVVHQIRLYQLHYLAQGIGFVGPSATPTFSADFISQRILSGGDGGPGAHGGNPLLMGKNQQLFPGLTSVTQSRLAAYVSHAGNNGSRREAPMSPGRIGRHFERHGGPPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPNMGGRARLSAKDSXXXXXXXXXXXXXXXXXXXAALKTLQEECWALRRRNEELGAMNTELLQLVVGEKHEVFSSPNT------------VGAGKRAGALTSPQTQAQVSQLSTLIHETVEKFTKVIWDTFGFDVRKEGVASLRRLRAEIVSHLDTLIAQEDILENV 1178
            LVAEAE L QE    LFL HA +GYE V L AVD +KGL+V    H       +     E++  RWV WEE R +A  RFGGHLP+A   S +   +    NLG L +FHEA LLEGIR  V QG +CQ+CGPT+V     +     D P G +PSF   TSPS  + P+S S  L  W+  L++       + PHPCDALHAAF  LH+    +HQ LVLLG  SG  DT++ +L+ LF+HY+  AP LV+RIS A+SLLS+LLVL+DAALLSSP++I F +                                        G L GA LD+F+IERDPAKYD+LRDALAS    +TLG++G+  GG    I                    +     P++G SLSATAL DLD+ DLSSSLS  L   N  ++  +      + E KG  TFE+L  SF  +G+  ++A  +LRAMAASI+LSKAS PL L LY  F+ L FP KLTK  IQRVG++ERDLKQLAREAFTLAIQ+LVGLLN+A++   + SPSSL+       S +   LS+L +P+PTL++NLGRFSDLAAAL VI TMT IGP + + Y              G KE                                                ++                    VNS  +S+YGL  AVNR+TLARVAE+KVERELKASL+LGK DDVTLPWGKTLLAKPLIRLNAAMLPP LA++VGC +R SG ++ATVLDGL+AW+D+AVGK        G    + +  E+M +   AT                                        E+G           ++  A  T  ++ AFHL+C LKT+SSPTTFDG+KV+ QIRLYQL  LAQG  FVGPS  P FS  FISQRILSGGDGGPGAHGGNPLL GKNQQLFPGL SVT+SRL+AY+S A + G        P R+ R         GG                                    P M GRAR+SAKDS                        LQEECWALRRRN+EL A++ EL ++V G       S NT             G G+   A +  + QA+V ++   ++ET++KFTKVIWDTFGFDVRKEGV  LR LR EIV HLD LIAQE+ L  +
Sbjct:    8 LVAEAEGLLQEADSYLFLPHACDGYERVALLAVDHTKGLHVRAESHQLERPNTVDTYHQEEEATRWVGWEEMRRLADDRFGGHLPRALPQSHVHQMLTCADNLGSLKYFHEAHLLEGIRVSVMQGRSCQRCGPTVV---GFEKGKGKDSPQGRVPSF--HTSPSMWTSPSSAS--LSTWQHSLDERWSPNGGTSPHPCDALHAAFYALHSRAGNAHQCLVLLGGFSGANDTRSQMLRVLFQHYQADAPVLVRRISAAISLLSSLLVLEDAALLSSPLKISFSIDLQTPPEGQDHDSTR-----------------------LTGTLTGAALDIFMIERDPAKYDALRDALASASGTETLGMDGVEAGG-PYPISLGTLYSSTSHTYTNALGGGNPPSPMPVNGASLSATALKDLDLSDLSSSLSLPL--QNPQLWTET------KDEKKGDKTFEALWSSFQAVGVGKSDAVSVLRAMAASIVLSKASAPLPLSLYWTFELLNFPRKLTKVEIQRVGASERDLKQLAREAFTLAIQELVGLLNTALS-SNNPSPSSLAAPQSPSPSTEPRILSILNLPAPTLNHNLGRFSDLAAALAVIQTMTQIGPHLAEDYRANPSQATTGTTPEGGKEKQEMCEKKTSGKAEAAAISSTEEAESHAKSSSGRSPENSGSMDSNSGTEKRKECRGVKNFPGPAQGPGEIVNSAVESVYGLVAAVNRATLARVAENKVERELKASLRLGKTDDVTLPWGKTLLAKPLIRLNAAMLPPDLAQLVGCQRRWSGKEAATVLDGLIAWVDRAVGKSGDRTDTSGTHASQEKGTERMEDHGQATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAMEEIGEV--------ASKARAPPTPARTPAFHLICDLKTHSSPTTFDGIKVLQQIRLYQLDTLAQGFPFVGPSPNPVFSTSFISQRILSGGDGGPGAHGGNPLLRGKNQQLFPGLNSVTRSRLSAYMSPAQSTGKVSTGAPVPARVSR--------TGGPNMSCARTHAGPLPGILPANQPDTRNRLGSVAAPAFPPMDGRARISAKDSTFATNHGHMQYQQPSNPAQPTPGYLQEECWALRRRNQELTALSMELAEMVTGPSGR-HQSTNTSEQGLFPGVGEGSGKGREGDARSLSEVQAKVMEVRASVYETLDKFTKVIWDTFGFDVRKEGVVRLRHLRHEIVGHLDALIAQEESLRGL 1179
The following BLAST results are available for this feature:
BLAST of NO21G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
50010001500200025003000350040004500Expect = 3.30e-229 / Id = 44.26SequenceEWM22529.1
Match NameE-valueIdentityDescription
EWM22529.13.300e-22944.26hypothetical protein Naga_100290g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL030nonsL030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR052ncniR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR061ngnoR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G00260.1NO21G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606231gene_9509Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100290g6gene7911Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G00260.1NO21G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G00260 ID=NO21G00260|Name=NO21G00260|organism=Nannochloropsis oceanica|type=gene|length=4757bp
ACCACAGGCGAGTCCGCAACACTTAACAACGACGCAAACAGCAACGAGAC
AGGCGGTGGTACAGCGCGTGGAGGACAAGGGTGGGTTTGGGCATCGACGC
CTTTCTAGCTCTACCTCATCCCCGTTCTAGACTCAACACCGTACCAACCA
TGACAATGATGGACGCAGCGATAATTGAAAACTTAGAAAGGCAGCAACAT
CTGCTCGTCGCAGAGGCGGAGAGGCTGAAGCAGGAGAAGGGTGGTCTCTT
TCTCCTCCATGCCGAAGAGGGCTACGAATGCGTGACCTTGGCAGCAGTGG
ACACTAGCAAGGGCCTTTACGTACACCCTCAAGGAGCAATGGGAATTATC
GAGCAGCAACAGGGGCGGTGGGTATCTTGGGAGGAGACGAGGAATATGGC
AATGACCCGTTTCGGGGGGCACTTGCCAAAGGCGGCATCACTGTCAAGTA
TTGTGGATGCCGTCAAGCAACACCAAAACCTGGGAGAGCTCACGCATTTC
CACGAGGCGACCTTATTGGAAGGCATTCGGCAGGGGGTGAAACAGGGAAT
GACCTGCCAACAATGCGGCCCAACCCTTGTCACTTTGGGCAGCATGGACG
CAGCCGTAACGTCGGATCTACCCGGCGCCCTGCCCTCTTTCTTGGCCCTG
ACTTCGCCATCTCCGCCTTCCGTTCCCGCTTCCACCTCCTCTCTCCTTCC
CGTGTGGAAGAGTGACCTGAACCAGGACCTGTGCCTTGCGGCAAGGTCAG
AGCCCCATCCATGCGACGCCCTGCACGCAGCCTTTCGCCAGCTCCACACC
CCCGGTGCTCCCTCGCACCAAACACTTGTTCTCCTCGGCTCAGCCTCCGG
GCTGGCTGACACCAAGACCCACATCCTCCAAGCACTTTTTGAGCATTACC
GTCGCCCGGCACCGCAGCTGGTGAAGCGTATCTCGACGGCCGTCTCCCTC
CTCTCCACCCTCCTCGTCCTGGACGATGCTGCCCTCCTATCCTCACCGAT
GGAGATCAAATTCTTCGTGAAGCTCCAGCAGCAGCAGCAGCAGCAGCAGT
CCATGAAAGATGAAACAATGGATACCCCTTCTACCCCCGGAGGTGCTATT
GCTGCTGCTGCTACCGCGGGCGCTGCTGCTGGGTTTGAGGGCAAGCTAGT
TGGGGCTGAATTAGATGTGTTTTTGATTGAAAGGGATCCCGCCAAGTACG
ACTCCTTAAGAGATGCTTTGGCCAGCCCACAAAGCGTTCAAACACTGGGA
TTAGAAGGGTTGGGGCTTGGAGGGAGGGAAGGAGGGATCGGTGAGAGCAG
CGGTGGTGGTGGGGGAGGGATGATGGGGGGGATGGGGAATCCGCCTCCTT
CCTTCTCGGTAGGAGCGCCGATTGATGGAACGTCGCTGTCGGCCACTGCA
CTTGGGGACTTAGATATGGGTGATTTATCATCTTCCTTGTCTTCGAGTCT
CTCCGGGAGCAATCACAGTATCTTTCCAGGGAGTGCTCATCCTCTTTGCC
GCCAGGGTGAGCACAAGGGGAGCATGACCTTCGAGAGTCTCCTTCAGTCA
TTCACTGACATTGGCCTCTCTGTTGCCAACGCCACCAGGATCCTCCGAGC
TATGGCCGCCTCCATCATTCTCTCCAAGGCCTCTGTTCCTCTCGCCTTAC
CTCTATACCGAGCCTTTGACTTTTTGGGGTTTCCCGCCAAGCTGACAAAG
ACAGCAATCCAACGTGTGGGATCCGCTGAACGCGACCTGAAGCAGCTCGC
ACGTGAGGCATTCACCCTTGCAATCCAAGACCTCGTCGGCCTATTGAACA
GTGCCATGGCCGTCGTCCCGTCTTTCTCCCCTTCTTCCCTCTCCTGCGCC
AGTGAGAAGATTGGTACCTTGTCAGTGCTGACCATACCCTCCCCCACTCT
TTCCAACAACCTCGGGCGCTTTAGTGATCTAGCTGCCGCCTTGGGCGTCA
TCCACACTATGACTTACATCGGCCCGCGCATTGTGCAGGCATATGGAAAG
AAGGAGGGAGGGGAGAAGGCAGAGCAGGAGGAAGGGGCTGGCGCTATCTC
TTCCACGGAGGAGGGCGAGGGCAGCAGCAACAGCAGCAGCAGTAGCAACA
ACAACAGGAACAACAACAACGGTCCTCCTTCTGTCTTGATGACAACTGTG
GACGAAGTGAACAGCACGGCTGACTCTATGTACGGGCTCGCAGAAGCTGT
TAATCGCTCCACTCTCGCCCGTGTCGCTGAGAGCAAGGTAGAACGCGAGC
TTAAGGCATCCCTCAAATTGGGGAAGGCTGACGATGTGACGTTACCATGG
GGAAAGACGCTCTTAGCCAAGCCCTTGATTCGTTTAAATGCCGCGATGCT
GCCACCAAGACTAGCGGAGATGGTGGGTTGTACTAAGAGGGCGTCGGGCG
CGGATTCGGCTACGGTGCTTGACGGGTTGGTCGCATGGATTGACAAGGCA
GTGGGGAAGGAGGAAGGAGAGAAAAAGAGAGAGGTCAGAGATGGAGAAAA
GATGATGAACCCTGCTACCATTGAGGAGGTAGAGGAGGAAGAGGAGCAGG
TGATGGTAGAGGAAGGGGTAAAAGAGGAGTGGGGGAGGAAGGAGGGTGAG
AGAATGGAGAATGTCACGGGTGCCGGTGACTTGAAGGGAGAAGTTGGCAC
CACTTTTCCCACCTTTACTAGCGTGAAGCAAAACGAGGATAACGCTGCTT
CTACCGTGGACAAGAGCCGAGCCTTTCACCTTGTGTGTGCCTTGAAGACC
AACTCCTCCCCCACAACATTTGACGGCATGAAAGTCGTTCACCAAATCCG
GTTGTATCAGCTCCACTACCTCGCACAAGGCATCGGTTTCGTCGGCCCCT
CCGCCACCCCCACCTTTTCCGCGGACTTTATCTCGCAGCGCATCCTGAGC
GGGGGCGATGGTGGCCCAGGTGCTCACGGGGGCAACCCTCTTTTGATGGG
GAAAAACCAGCAGCTCTTCCCGGGCTTAACATCTGTCACCCAGTCACGGT
TGGCGGCCTATGTCTCACATGCAGGTAATAACGGCAGCAGAAGAGAGGCA
CCGATGTCGCCTGGGCGGATAGGGCGTCATTTTGAGCGGCATGGTGGACC
CCCAGGCGGTGGAAATGGCCACACTCATGCTGCCGCGGCATCAGCAGTCA
TGTCGGGCTTATCGGAGGCTTTTGCGGGCCGTGGAGGCGGGGGGGGGATG
TCCCATTCCTCTATTGCTCCAAACATGGGTGGACGTGCTCGGCTTTCGGC
AAAGGACTCGACACTGGCGTTGGGCCACGGGCGTCCACACCCTCACCATG
CCCATCCGCACGCACCCGCAGCCTTGAAGACGCTGCAGGAAGAGTGTTGG
GCGCTGCGGCGACGGAACGAAGAGCTTGGGGCTATGAATACAGAGCTGCT
ACAGTTGGTTGTGGGCGAGAAGCACGAGGTTTTTTCCTCGCCCAACACAG
TGGGAGCAGGGAAGCGCGCTGGAGCTCTGACTAGCCCTCAAACCCAGGCT
CAAGTCTCACAGTTGTCTACATTGATCCACGAGACGGTCGAGAAGTTCAC
GAAGGTAATTTGGGATACCTTTGGCTTTGACGTGCGAAAGGAGGGCGTGG
CGAGCCTGCGTCGATTGCGCGCAGAGATCGTGAGCCACTTGGACACTCTC
ATTGCCCAGGAGGACATTTTGGAGAACGTGAAGAGTGGTTTTGGGAGTGG
AGGCGTCAGTGGCAGCATCGGTGGCATCGGTACCCTTGGCGGGGCGCCGG
GGATGGGACCAGGAGAATTGCCTCATCTACCGGCGATGCCTCCTCTTCAG
CACCACCGAGACGCTGGTGTATCCGGACATCACCACGGAGGTCATCACAA
CCAATATCACAACAACAACAACCACCACAAGGCCTATCAGCATCAGCAGC
ATCAGCTTCAACAGGAGCAATACCCGTATTCGCACTCTCTTCATCACAAC
GCCCACCACCACGTACCCCCTCACCACCTTGCTGCACCAAACCATCATCA
CAAGCAACACCATCACCATACCTCACCTTTCTCCTTGCCGAACGGAGAGG
ACATGTTTTACTGAACAAATTATGAAACGTTACAGTAGAAAATGTGAAAT
ATTTACATTATATGAAACGGCATGTCTGAATTTAGCTTTCGTGCGGCGCA
TACATTCCCATTTCGGGCGAAGTACTTAATTGTAGTGTCATTATGAAGAG
GAGCGGAGGGATTCTGTTCTTCTGGGAAAAAAAGCATTTTAATTTAATTC
ACAACCGATCGGAATTGATTTTCCCTGCAGATCATTTAATTCTGTAGGAG
TGTGTGAGCATCTGCAACAGTAGCAAATCTAGAGAGAAATAAGGGGACAA
AGAGACGAAGATAATAAAGGTCCTGATTTTCAGCCTGGTACCGAACGACA
TGTGTCTGTACGTTGAGTAGTCTTTACAGCAATGGGGCTCCGCTGCTGGA
AAGACTAAAAACAAACGATTTCAACATGATATCAGGAGAAGAATTCAAAG
ATTAGGAATCGGATGTCCTGAGTTGTAACAAATTTAATATTTATAGTAAA
TAGCCTGGATGAGCCACCCTACTCTCAATAGCTTACCGAGCCAGTGTGGA
GCACAAAAGGCGATCAGATCATCAGGTATTGGGGCTACGACTTAACAGCA
ATCTCAACAGTACTAACGGTGGGGAAGAGGCAGAATGCCTCTTTTTGCAT
TAAATTCTGCCACCTTTATGTTGGGAAAGAAAAAAGGAGGACCCACATGA
TAAAAGA
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protein sequence of NO21G00260.1

>NO21G00260.1-protein ID=NO21G00260.1-protein|Name=NO21G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1305bp
MTMMDAAIIENLERQQHLLVAEAERLKQEKGGLFLLHAEEGYECVTLAAV
DTSKGLYVHPQGAMGIIEQQQGRWVSWEETRNMAMTRFGGHLPKAASLSS
IVDAVKQHQNLGELTHFHEATLLEGIRQGVKQGMTCQQCGPTLVTLGSMD
AAVTSDLPGALPSFLALTSPSPPSVPASTSSLLPVWKSDLNQDLCLAARS
EPHPCDALHAAFRQLHTPGAPSHQTLVLLGSASGLADTKTHILQALFEHY
RRPAPQLVKRISTAVSLLSTLLVLDDAALLSSPMEIKFFVKLQQQQQQQQ
SMKDETMDTPSTPGGAIAAAATAGAAAGFEGKLVGAELDVFLIERDPAKY
DSLRDALASPQSVQTLGLEGLGLGGREGGIGESSGGGGGGMMGGMGNPPP
SFSVGAPIDGTSLSATALGDLDMGDLSSSLSSSLSGSNHSIFPGSAHPLC
RQGEHKGSMTFESLLQSFTDIGLSVANATRILRAMAASIILSKASVPLAL
PLYRAFDFLGFPAKLTKTAIQRVGSAERDLKQLAREAFTLAIQDLVGLLN
SAMAVVPSFSPSSLSCASEKIGTLSVLTIPSPTLSNNLGRFSDLAAALGV
IHTMTYIGPRIVQAYGKKEGGEKAEQEEGAGAISSTEEGEGSSNSSSSSN
NNRNNNNGPPSVLMTTVDEVNSTADSMYGLAEAVNRSTLARVAESKVERE
LKASLKLGKADDVTLPWGKTLLAKPLIRLNAAMLPPRLAEMVGCTKRASG
ADSATVLDGLVAWIDKAVGKEEGEKKREVRDGEKMMNPATIEEVEEEEEQ
VMVEEGVKEEWGRKEGERMENVTGAGDLKGEVGTTFPTFTSVKQNEDNAA
STVDKSRAFHLVCALKTNSSPTTFDGMKVVHQIRLYQLHYLAQGIGFVGP
SATPTFSADFISQRILSGGDGGPGAHGGNPLLMGKNQQLFPGLTSVTQSR
LAAYVSHAGNNGSRREAPMSPGRIGRHFERHGGPPGGGNGHTHAAAASAV
MSGLSEAFAGRGGGGGMSHSSIAPNMGGRARLSAKDSTLALGHGRPHPHH
AHPHAPAALKTLQEECWALRRRNEELGAMNTELLQLVVGEKHEVFSSPNT
VGAGKRAGALTSPQTQAQVSQLSTLIHETVEKFTKVIWDTFGFDVRKEGV
ASLRRLRAEIVSHLDTLIAQEDILENVKSGFGSGGVSGSIGGIGTLGGAP
GMGPGELPHLPAMPPLQHHRDAGVSGHHHGGHHNQYHNNNNHHKAYQHQQ
HQLQQEQYPYSHSLHHNAHHHVPPHHLAAPNHHHKQHHHHTSPFSLPNGE
DMFY*
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Synonyms
Publications