Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:83614..88370 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G00260.1 vs.
Match: EWM22529.1 (hypothetical protein Naga_100290g6 [Nannochloropsis gaditana])
HSP 1 Score: 867.1 bits (2239), Expect = 7.100e-248
Identity = 597/1235 (48.34%), Postives = 740/1235 (59.92%), Query Frame = 0
Query: 19 LVAEAERLKQEKGG-LFLLHAEEGYECVTLAAVDTSKGLYV----HPQGAMGII-----EQQQGRWVSWEETRNMAMTRFGGHLPKAASLSSIVDAVKQHQNLGELTHFHEATLLEGIRQGVKQGMTCQQCGPTLVTLGSMDAAVTSDLP-GALPSFLALTSPSPPSVPASTSSLLPVWKSDLNQDLCLAARSEPHPCDALHAAFRQLHTPGAPSHQTLVLLGSASGLADTKTHILQALFEHYRRPAPQLVKRISTAVSLLSTLLVLDDAALLSSPMEIKFFVKLQQQQQQQQSMKDETMDTPSTPGGAIAAAATAGAAAGFEGKLVGAELDVFLIERDPAKYDSLRDALASPQSVQTLGLEGLGLGGRE----GGIGESSGGGGGGMMGGMGNPPPSFSVGAPIDGTSLSATALGDLDMGDLSSSLSSSLSGSNHSIFPGSAHPLCRQGEHKGSMTFESLLQSFTDIGLSVANATRILRAMAASIILSKASVPLALPLYRAFDFLGFPAKLTKTAIQRVGSAERDLKQLAREAFTLAIQDLVGLLNSAMAVVPSFSPSSLSCA-----SEKIGTLSVLTIPSPTLSNNLGRFSDLAAALGVIHTMTYIGPRIVQAY--------------GKKEGGEKAEQEEG----AGAISSTEEGEGSSNSSSS----SNNNRNNNNGP------------PSVLMTTVDEVNSTADSMYGLAEAVNRSTLARVAESKVERELKASLKLGKADDVTLPWGKTLLAKPLIRLNAAMLPPRLAEMVGCTKRASGADSATVLDGLVAWIDKAVGKEEGEKKREVRDGEKMMNPATIEEVEEEEEQVMVEE--------GVKEEWGRKEGERMENVTGAGDLKGEVGTTFPTFTSVKQNEDNAASTVDKSRAFHLVCALKTNSSPTTFDGMKVVHQIRLYQLHYLAQGIGFVGPSATPTFSADFISQRILSGGDGGPGAHGGNPLLMGKNQQLFPGLTSVTQSRLAAYVSHAGNNGSRREAPMSPGRIGRHFERHGGPPGGGNGHTHAAAASAVMSGLSEAFAGRGGGGGMSHSSIAPNMGGRARLSAKDSTLALGHGRPHPHHAHPHAPAALKT--LQEECWALRRRNEELGAMNTELLQLVVGEKHEVFSSPNT------------VGAGKRAGALTSPQTQAQVSQLSTLIHETVEKFTKVIWDTFGFDVRKEGVASLRRLRAEIVSHLDTLIAQEDILENV 1178
LVAEAE L QE LFL HA +GYE V L AVD +KGL+V H + E++ RWV WEE R +A RFGGHLP+A S + + NLG L +FHEA LLEGIR V QG +CQ+CGPT+V + D P G +PSF TSPS + P+S S L W+ L++ + PHPCDALHAAF LH+ +HQ LVLLG SG DT++ +L+ LF+HY+ AP LV+RIS A+SLLS+LLVL+DAALLSSP++I F + LQ + Q D T T G L GA LD+F+IERDPAKYD+LRDALAS +TLG++G+ GG G + S+ +GG GNPP P++G SLSATAL DLD+ DLSSSLS L N ++ + + E KG TFE+L SF +G+ ++A +LRAMAASI+LSKAS PL L LY F+ L FP KLTK IQRVG++ERDLKQLAREAFTLAIQ+LVGLLN+A++ + SPSSL+ S + LS+L +P+PTL++NLGRFSDLAAAL VI TMT IGP + + Y G KE E E++ A AISSTEE E + SSS ++ + ++N+G P + VNS +S+YGL AVNR+TLARVAE+KVERELKASL+LGK DDVTLPWGKTLLAKPLIRLNAAMLPP LA++VGC +R SG ++ATVLDGL+AW+D+AVGK R G E +E+ + E G + G +EG R E TG +GEVG ++ A T ++ AFHL+C LKT+SSPTTFDG+KV+ QIRLYQL LAQG FVGPS P FS FISQRILSGGDGGPGAHGGNPLL GKNQQLFPGL SVT+SRL+AY+S A + G P R+ R G P THA ++ R G + P M GRAR+SAKDST A HG H + P PA LQEECWALRRRN+EL A++ EL ++V G S NT G G+ A + + QA+V ++ ++ET++KFTKVIWDTFGFDVRKEGV LR LR EIV HLD LIAQE+ L +
Sbjct: 8 LVAEAEGLLQEADSYLFLPHACDGYERVALLAVDHTKGLHVRAESHQLERPNTVDTYHQEEEATRWVGWEEMRRLADDRFGGHLPRALPQSHVHQMLTCADNLGSLKYFHEAHLLEGIRVSVMQGRSCQRCGPTVV---GFEKGKGKDSPQGRVPSFH--TSPSMWTSPSSAS--LSTWQHSLDERWSPNGGTSPHPCDALHAAFYALHSRAGNAHQCLVLLGGFSGANDTRSQMLRVLFQHYQADAPVLVRRISAAISLLSSLLVLEDAALLSSPLKISFSIDLQTPPEGQDH--DSTRLT---------------------GTLTGAALDIFMIERDPAKYDALRDALASASGTETLGMDGVEAGGPYPISLGTLYSSTSHTYTNALGG-GNPPSPM----PVNGASLSATALKDLDLSDLSSSLSLPLQ--NPQLWTET------KDEKKGDKTFEALWSSFQAVGVGKSDAVSVLRAMAASIVLSKASAPLPLSLYWTFELLNFPRKLTKVEIQRVGASERDLKQLAREAFTLAIQELVGLLNTALSS-NNPSPSSLAAPQSPSPSTEPRILSILNLPAPTLNHNLGRFSDLAAALAVIQTMTQIGPHLAEDYRANPSQATTGTTPEGGKEKQEMCEKKTSGKAEAAAISSTEEAESHAKSSSGRSPENSGSMDSNSGTEKRKECRGVKNFPGPAQGPGEIVNSAVESVYGLVAAVNRATLARVAENKVERELKASLRLGKTDDVTLPWGKTLLAKPLIRLNAAMLPPDLAQLVGCQRRWSGKEAATVLDGLIAWVDRAVGKSGD---RTDTSGTHASQEKGTERMEDHGQATGAGEVGDSGEGAGTRACGGEREGAR-EEATG----EGEVGDQAMEEIGEVASKARAPPTPARTPAFHLICDLKTHSSPTTFDGIKVLQQIRLYQLDTLAQGFPFVGPSPNPVFSTSFISQRILSGGDGGPGAHGGNPLLRGKNQQLFPGLNSVTRSRLSAYMSPAQSTGKVSTGAPVPARVSRT-----GGPNMSCARTHAGPLPGILPANQPDTRNRLGSVA---APAFPPMDGRARISAKDSTFATNHG--HMQYQQPSNPAQPTPGYLQEECWALRRRNQELTALSMELAEMVTGPSGR-HQSTNTSEQGLFPGVGEGSGKGREGDARSLSEVQAKVMEVRASVYETLDKFTKVIWDTFGFDVRKEGVVRLRHLRHEIVGHLDALIAQEESLRGL 1179
The following BLAST results are available for this feature:
BLAST of NO21G00260.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 Expect = 7.10e-248 / Id = 48.34 Sequence EWM22529.1
Match Name E-value Identity Description
EWM22529.1 7.100e-248 48.34 hypothetical protein Naga_100290g6 [Nannochloropsi... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G00260.1 ID=NO21G00260.1|Name=NO21G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=4757bp back to top protein sequence of NO21G00260.1
>NO21G00260.1-protein ID=NO21G00260.1-protein|Name=NO21G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1305bp back to top mRNA from alignment at chr21:83614..88370-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G00260.1 ID=NO21G00260.1|Name=NO21G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=4757bp|location=Sequence derived from alignment at chr21:83614..88370- (Nannochloropsis oceanica)A
TGACAATGATGGACGCAGCGATAATTGAAAACTTAGAAAGGCAGCAACAT
CTGCTCGTCGCAGAGGCGGAGAGGCTGAAGCAGGAGAAGGGTGGTCTCTT
TCTCCTCCATGCCGAAGAGGGCTACGAATGCGTGACCTTGGCAGCAGTGG
ACACTAGCAAGGGCCTTTACGTACACCCTCAAGGAGCAATGGGAATTATC
GAGCAGCAACAGGGGCGGTGGGTATCTTGGGAGGAGACGAGGAATATGGC
AATGACCCGTTTCGGGGGGCACTTGCCAAAGGCGGCATCACTGTCAAGTA
TTGTGGATGCCGTCAAGCAACACCAAAACCTGGGAGAGCTCACGCATTTC
CACGAGGCGACCTTATTGGAAGGCATTCGGCAGGGGGTGAAACAGGGAAT
GACCTGCCAACAATGCGGCCCAACCCTTGTCACTTTGGGCAGCATGGACG
CAGCCGTAACGTCGGATCTACCCGGCGCCCTGCCCTCTTTCTTGGCCCTG
ACTTCGCCATCTCCGCCTTCCGTTCCCGCTTCCACCTCCTCTCTCCTTCC
CGTGTGGAAGAGTGACCTGAACCAGGACCTGTGCCTTGCGGCAAGGTCAG
AGCCCCATCCATGCGACGCCCTGCACGCAGCCTTTCGCCAGCTCCACACC
CCCGGTGCTCCCTCGCACCAAACACTTGTTCTCCTCGGCTCAGCCTCCGG
GCTGGCTGACACCAAGACCCACATCCTCCAAGCACTTTTTGAGCATTACC
GTCGCCCGGCACCGCAGCTGGTGAAGCGTATCTCGACGGCCGTCTCCCTC
CTCTCCACCCTCCTCGTCCTGGACGATGCTGCCCTCCTATCCTCACCGAT
GGAGATCAAATTCTTCGTGAAGCTCCAGCAGCAGCAGCAGCAGCAGCAGT
CCATGAAAGATGAAACAATGGATACCCCTTCTACCCCCGGAGGTGCTATT
GCTGCTGCTGCTACCGCGGGCGCTGCTGCTGGGTTTGAGGGCAAGCTAGT
TGGGGCTGAATTAGATGTGTTTTTGATTGAAAGGGATCCCGCCAAGTACG
ACTCCTTAAGAGATGCTTTGGCCAGCCCACAAAGCGTTCAAACACTGGGA
TTAGAAGGGTTGGGGCTTGGAGGGAGGGAAGGAGGGATCGGTGAGAGCAG
CGGTGGTGGTGGGGGAGGGATGATGGGGGGGATGGGGAATCCGCCTCCTT
CCTTCTCGGTAGGAGCGCCGATTGATGGAACGTCGCTGTCGGCCACTGCA
CTTGGGGACTTAGATATGGGTGATTTATCATCTTCCTTGTCTTCGAGTCT
CTCCGGGAGCAATCACAGTATCTTTCCAGGGAGTGCTCATCCTCTTTGCC
GCCAGGGTGAGCACAAGGGGAGCATGACCTTCGAGAGTCTCCTTCAGTCA
TTCACTGACATTGGCCTCTCTGTTGCCAACGCCACCAGGATCCTCCGAGC
TATGGCCGCCTCCATCATTCTCTCCAAGGCCTCTGTTCCTCTCGCCTTAC
CTCTATACCGAGCCTTTGACTTTTTGGGGTTTCCCGCCAAGCTGACAAAG
ACAGCAATCCAACGTGTGGGATCCGCTGAACGCGACCTGAAGCAGCTCGC
ACGTGAGGCATTCACCCTTGCAATCCAAGACCTCGTCGGCCTATTGAACA
GTGCCATGGCCGTCGTCCCGTCTTTCTCCCCTTCTTCCCTCTCCTGCGCC
AGTGAGAAGATTGGTACCTTGTCAGTGCTGACCATACCCTCCCCCACTCT
TTCCAACAACCTCGGGCGCTTTAGTGATCTAGCTGCCGCCTTGGGCGTCA
TCCACACTATGACTTACATCGGCCCGCGCATTGTGCAGGCATATGGAAAG
AAGGAGGGAGGGGAGAAGGCAGAGCAGGAGGAAGGGGCTGGCGCTATCTC
TTCCACGGAGGAGGGCGAGGGCAGCAGCAACAGCAGCAGCAGTAGCAACA
ACAACAGGAACAACAACAACGGTCCTCCTTCTGTCTTGATGACAACTGTG
GACGAAGTGAACAGCACGGCTGACTCTATGTACGGGCTCGCAGAAGCTGT
TAATCGCTCCACTCTCGCCCGTGTCGCTGAGAGCAAGGTAGAACGCGAGC
TTAAGGCATCCCTCAAATTGGGGAAGGCTGACGATGTGACGTTACCATGG
GGAAAGACGCTCTTAGCCAAGCCCTTGATTCGTTTAAATGCCGCGATGCT
GCCACCAAGACTAGCGGAGATGGTGGGTTGTACTAAGAGGGCGTCGGGCG
CGGATTCGGCTACGGTGCTTGACGGGTTGGTCGCATGGATTGACAAGGCA
GTGGGGAAGGAGGAAGGAGAGAAAAAGAGAGAGGTCAGAGATGGAGAAAA
GATGATGAACCCTGCTACCATTGAGGAGGTAGAGGAGGAAGAGGAGCAGG
TGATGGTAGAGGAAGGGGTAAAAGAGGAGTGGGGGAGGAAGGAGGGTGAG
AGAATGGAGAATGTCACGGGTGCCGGTGACTTGAAGGGAGAAGTTGGCAC
CACTTTTCCCACCTTTACTAGCGTGAAGCAAAACGAGGATAACGCTGCTT
CTACCGTGGACAAGAGCCGAGCCTTTCACCTTGTGTGTGCCTTGAAGACC
AACTCCTCCCCCACAACATTTGACGGCATGAAAGTCGTTCACCAAATCCG
GTTGTATCAGCTCCACTACCTCGCACAAGGCATCGGTTTCGTCGGCCCCT
CCGCCACCCCCACCTTTTCCGCGGACTTTATCTCGCAGCGCATCCTGAGC
GGGGGCGATGGTGGCCCAGGTGCTCACGGGGGCAACCCTCTTTTGATGGG
GAAAAACCAGCAGCTCTTCCCGGGCTTAACATCTGTCACCCAGTCACGGT
TGGCGGCCTATGTCTCACATGCAGGTAATAACGGCAGCAGAAGAGAGGCA
CCGATGTCGCCTGGGCGGATAGGGCGTCATTTTGAGCGGCATGGTGGACC
CCCAGGCGGTGGAAATGGCCACACTCATGCTGCCGCGGCATCAGCAGTCA
TGTCGGGCTTATCGGAGGCTTTTGCGGGCCGTGGAGGCGGGGGGGGGATG
TCCCATTCCTCTATTGCTCCAAACATGGGTGGACGTGCTCGGCTTTCGGC
AAAGGACTCGACACTGGCGTTGGGCCACGGGCGTCCACACCCTCACCATG
CCCATCCGCACGCACCCGCAGCCTTGAAGACGCTGCAGGAAGAGTGTTGG
GCGCTGCGGCGACGGAACGAAGAGCTTGGGGCTATGAATACAGAGCTGCT
ACAGTTGGTTGTGGGCGAGAAGCACGAGGTTTTTTCCTCGCCCAACACAG
TGGGAGCAGGGAAGCGCGCTGGAGCTCTGACTAGCCCTCAAACCCAGGCT
CAAGTCTCACAGTTGTCTACATTGATCCACGAGACGGTCGAGAAGTTCAC
GAAGGTAATTTGGGATACCTTTGGCTTTGACGTGCGAAAGGAGGGCGTGG
CGAGCCTGCGTCGATTGCGCGCAGAGATCGTGAGCCACTTGGACACTCTC
ATTGCCCAGGAGGACATTTTGGAGAACGTGAAGAGTGGTTTTGGGAGTGG
AGGCGTCAGTGGCAGCATCGGTGGCATCGGTACCCTTGGCGGGGCGCCGG
GGATGGGACCAGGAGAATTGCCTCATCTACCGGCGATGCCTCCTCTTCAG
CACCACCGAGACGCTGGTGTATCCGGACATCACCACGGAGGTCATCACAA
CCAATATCACAACAACAACAACCACCACAAGGCCTATCAGCATCAGCAGC
ATCAGCTTCAACAGGAGCAATACCCGTATTCGCACTCTCTTCATCACAAC
GCCCACCACCACGTACCCCCTCACCACCTTGCTGCACCAAACCATCATCA
CAAGCAACACCATCACCATACCTCACCTTTCTCCTTGCCGAACGGAGAGG
ACATGTTTTACTGA back to top Coding sequence (CDS) from alignment at chr21:83614..88370-
>NO21G00260.1 ID=NO21G00260.1|Name=NO21G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=3915bp|location=Sequence derived from alignment at chr21:83614..88370- (Nannochloropsis oceanica) back to top