NO20G01870, NO20G01870 (gene) Nannochloropsis oceanica

Overview
NameNO20G01870
Unique NameNO20G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1961
Alignment locationchr20:561833..563793 -

Link to JBrowse

Properties
Property NameValue
DescriptionFormamidopyrimidine-dna glycosylase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:561833..563793 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0003684damaged DNA binding
GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0008270zinc ion binding
GO:0003824catalytic activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006289nucleotide-excision repair
GO:0006284base-excision repair
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR035937MutM-like_N-ter
IPR010979Ribosomal_S13-like_H2TH
IPR000214Znf_DNA_glyclase/AP_lyase
IPR003034SAP_dom
IPR015886DNA_glyclase/AP_lyase_DNA-bd
IPR012319DNA_glycosylase/AP_lyase_cat
Homology
BLAST of NO20G01870 vs. NCBI_GenBank
Match: EWM22053.1 (formamidopyrimidine-dna glycosylase [Nannochloropsis gaditana])

HSP 1 Score: 438.3 bits (1126), Expect = 3.400e-119
Identity = 218/320 (68.12%), Postives = 245/320 (76.56%), Query Frame = 0
Query:   30 RQSQLLRFLAFLLFFARPPLATAYRLSLQMVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKA--LPDEPP-----------------------VVVHIHFGMSGAFSVFPLPGKTHTPTTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQP 325
            R   +L     L+  +     +AY   L+MVEGHGCHRVVAAHRRLLLGHVF+ATSPNGRF EGAKLIDG+RLAR+EAVGKNLFYFW  A  LP  PP                       VV+H+HFGMSGAFSV P PGK  TPTTRL LVNK+ N++ASLSAMTCVHGG +L+E K  ALGPDPLREDADKERLW KMQ+TSKAIGQ+LMDQS +AGIGNIYRAEILFKSG+HPEQPA T+  + FETLWMHSVLLLQRGFT+GSILTVD +EA+ LGPPWTRRYIYNH HCGRCGS ++NW+MAGRT     T  P
Sbjct:   14 RLDSVLLVTLLLILVSSFSKTSAYSFRLRMVEGHGCHRVVAAHRRLLLGHVFQATSPNGRFLEGAKLIDGKRLARVEAVGKNLFYFWTPAAILPGTPPPPVVKRGTGKRKPIEIATSSEETVVMHVHFGMSGAFSVSPFPGKVATPTTRLFLVNKERNLTASLSAMTCVHGGLELFEGKLEALGPDPLREDADKERLWGKMQATSKAIGQILMDQSCVAGIGNIYRAEILFKSGVHPEQPANTVAHAAFETLWMHSVLLLQRGFTSGSILTVDPSEASRLGPPWTRRYIYNHSHCGRCGSRIQNWSMAGRTATQEQTAAP 333          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: GAX84584.1 (hypothetical protein CEUSTIGMA_g12005.t1 [Chlamydomonas eustigma])

HSP 1 Score: 410.2 bits (1053), Expect = 1.000e-110
Identity = 215/397 (54.16%), Postives = 262/397 (65.99%), Query Frame = 0
Query:   55 LSLQMVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEPPV-VVHIHFGMSGAFSVFPLPGKTHTPTTRLSLVNKDINISASLSAMTCVHG-GPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQPLLAGTE-------------------LAAARKQAVAVARESEEFVSHCAGEDSATLTPAKMTVALLRSKLGALGESTRGKKAELVSRLSQTLVAAGPAAVMAIAKQEEEGKEMVATTMNVTAAESL 431
            +S+ MVEGHGCHRV  AHR+LLLGH FK +SPNGRF EGAK IDG+ L RIE +GKNLFYF+  +        VVH HFGMSGAF V  LPG    PTTRL L+N+++ +   LSAMT  HG  P  Y  K   LGPDPLREDADKE LW ++Q++ K IG VLM Q  +AGIGNIYRAEILFK+G+HPEQPA ++ + +F+ +W HSV LLQRGF TGSILTVD  +AA+LG PWTRRYIYNH +CG CG  VR W MA R VYCCP CQPL +  +                   + AARK A+A +R ++ F+SHCA EDSA L+PA+MTV  L++ L A+G    G K EL+ RL Q    AG        K+EEE ++       +  AE L
Sbjct:   23 VSVVMVEGHGCHRVGHAHRQLLLGHTFKCSSPNGRFVEGAKAIDGKFLVRIEVIGKNLFYFFGPSKDAGGATDVVHFHFGMSGAFRVVSLPGPEPKPTTRLQLLNEELGLVGHLSAMTLDHGPSPSFYHEKAAKLGPDPLREDADKEVLWNQIQTSKKPIGLVLMSQDMVAGIGNIYRAEILFKAGVHPEQPAASVDRDSFDRIWFHSVTLLQRGFVTGSILTVDPEDAAVLGQPWTRRYIYNHSNCGFCGGPVRVWDMAARKVYCCPKCQPLRSPEDKSIPSVSAPKSPAPGLSYGITAARKAAMAASRPAQPFISHCAPEDSAVLSPARMTVPQLKASLKAVGLPASGSKGELLQRLQQIKPDAGN------DKKEEEDEDTPDLGDEIDLAEKL 413          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: XP_013904457.1 (endonuclease VIII [Monoraphidium neglectum] >KIZ05438.1 endonuclease VIII [Monoraphidium neglectum])

HSP 1 Score: 383.3 bits (983), Expect = 1.300e-102
Identity = 205/406 (50.49%), Postives = 254/406 (62.56%), Query Frame = 0
Query:   59 MVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIE-------------------------------------AVGKNLFYFWEK--------ALPDEPPVVVHIHFGMSGAFSVFPLPGKTHTP---TTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQPLLAGTELAAARKQAVAVARESEEFVSHCAGEDSATLTPAKMTVALLRSKLGALGESTRGKKAELVSRL--SQTLVAAGPAAVMAIAKQEEEG 415
            MVEGH CHRV  AHR+LL+G  FKATSPNGRF +GA+ IDG+ L+RIE                                       GKNLFYF+ +        AL D    VVHIHFGMSGAF   P   +   P   TTRL L +    + A LSAMT  HGG +LY  K + LGPDPLREDAD E LW K+Q   K IG VLMDQ+ +AG+GNIYRAE+L+K+ +HPEQPA T+ +  F+T+W HSV LLQRGFT+GSILTVD  +A +LG PWTRRYIYNH  CGRC   V++W MA RTVYCCPTCQPLL GT++   R+ ++A A+ ++EFVSHCA +D+    P+KMTV  L+++L AL     G KA L++RL  ++   A G A   A A+    G
Sbjct:    1 MVEGHQCHRVAHAHRQLLVGRAFKATSPNGRFADGARAIDGKPLSRIEVGARRPEHAARQLDSGAARYRGGAVADAATRASDACSVHGKNLFYFFGERQGGQEGNALAD----VVHIHFGMSGAFRTMPAAQEAQKPPRETTRLRLEHPGDGLVAHLSAMTVAHGGMELYHEKSSKLGPDPLREDADPELLWAKVQKCKKPIGLVLMDQTMMAGVGNIYRAEVLYKAAIHPEQPANTLSRDAFDTVWAHSVELLQRGFTSGSILTVDPEDAKILGKPWTRRYIYNHAQCGRCKGPVKSWDMANRTVYCCPTCQPLLEGTQVTPQRRASMAAAKTAKEFVSHCAPDDTGDAPPSKMTVPQLKAQLKALNLDITGSKAALIARLEAARDWAAGGGAKAEAAAEAGPSG 402          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: XP_002502394.1 (DNA glycosylase [Micromonas commoda] >ACO63652.1 DNA glycosylase [Micromonas commoda])

HSP 1 Score: 367.5 bits (942), Expect = 7.500e-98
Identity = 213/428 (49.77%), Postives = 264/428 (61.68%), Query Frame = 0
Query:   59 MVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEPPV-VVHIHFGMSGAFSV-FPLPGKTHTPTTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQPLL-AGTELAAARKQAVAVARESEEFVSHCAGEDSATLT--PAKMTVALLRSKLGAL-----GESTRGKKAELVSRLSQTLVAAGPAAVMAIAKQEEEGKEMVATTMNVTAAESLPATPLKVRPGTLHLAAATSAQRAAREKRRAGENRAVEHVALHADKA 477
            MVEGHG HRV A+ RR L+G  F ATSPNGRF  GA++IDG+ L R++A+GKNLFYF+ +A  D P   V+H+HFGMSG FS    LPG     TTRL L +++  I A LSAMT   G   L+++K   LG DPLREDAD +RLW K   + K++G  LMDQ+  AG+GNIYRAEIL+K+G+HPEQP   +P+  F+ +W HSV LLQRGF TGSILTVD  EA  LG PWTRRY+YN R CGRCGSAV+ W MA RTVYCC  CQPL+ + T   A+    + VAR+   FVSHCA E   TL   P K+TVA L+  L +      G     KKAELV+ +          A +A        +  +A T    +   +PA  +    G     A  SA     EKRRAGE   VEHVAL  D++
Sbjct:    1 MVEGHGVHRVAASARRHLVGKRFTATSPNGRFAHGAEVIDGKELKRVDAIGKNLFYFFNEA--DGPDAHVMHVHFGMSGRFSTHHTLPGPEPGATTRLRLESREHGICALLSAMTVELGDISLFQTKRAKLGEDPLREDADADRLWEKFTRSRKSVGLALMDQAMFAGVGNIYRAEILYKAGVHPEQPCADLPRPAFDEVWRHSVELLQRGFVTGSILTVDPDEAKTLGEPWTRRYVYNQRSCGRCGSAVKTWDMAARTVYCCEVCQPLVKSETSNGASAAVRIKVARDHVPFVSHCAAESPGTLAAEPEKLTVAKLKEILDSAAAWPEGLKRTAKKAELVAAVRDMATGGYTPATLA--------RHGLAAT---PSPRKIPAPGIAALEG-----AEASASXXXAEKRRAGEKGNVEHVALADDES 410          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: XP_011397691.1 (Endonuclease 8 1 [Auxenochlorella protothecoides] >KFM24803.1 Endonuclease 8 1 [Auxenochlorella protothecoides])

HSP 1 Score: 357.5 bits (916), Expect = 7.700e-95
Identity = 189/351 (53.85%), Postives = 227/351 (64.67%), Query Frame = 0
Query:   59 MVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEPPVVVHIHFGMSGAFSVFPLPGKTHTPTTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQPLLAGTELAAARKQAVAVARESEEFVSHCAGEDSATL-TPAKMTVALLRSKLGALGESTRGKKAELVSRLSQT----LVAAGPAAV 405
            MVEGH CHRV  AHRR LLG  FKA+SPNGRFT+GA  +  + L RIE  GK LFYF+      + P+V+H HFGMSGAF    LPG   T TTRL L++++    + LSAMT +HG  DLY++K + LGPDPLREDAD+E +W  + ++ K+IG +LMDQS +AGIGNIYRAEIL+K+G+HPEQP  T+    F+ LW HSVLLLQRGF TGSILTVD+ EA  LGP W RRYIYN   CGRCG  V  W MAGRT                               EF+SHCA ED A L +P KMTVA LR+ LGALG  T G+KA L +RL++      V A P  V
Sbjct:    1 MVEGHQCHRVAHAHRRQLLGRRFKASSPNGRFTDGAAALHDQPLHRIEVHGKYLFYFF--GTDPKDPIVLHFHFGMSGAFRTTALPGPEPTATTRLQLLDQEAGTVSHLSAMTVLHGSRDLYDAKRSKLGPDPLREDADEELVWSTVSTSKKSIGLLLMDQSVVAGIGNIYRAEILYKAGVHPEQPGNTLSVEAFQRLWRHSVLLLQRGFATGSILTVDEGEAPSLGPAWARRYIYNQARCGRCGGRVATWDMAGRT-------------------------------EFLSHCAPEDPAALGSPKKMTVAGLRAALGALGADTAGRKAALAARLAERRALGFVEAAPGGV 318          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: KXS17204.1 (H2TH-domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 347.1 bits (889), Expect = 1.000e-91
Identity = 190/377 (50.40%), Postives = 235/377 (62.33%), Query Frame = 0
Query:   59 MVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEPPVVVHIHFGMSGAFSVFPLPGKTHT-PTTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQPLLAGTELAAARKQAVAVARESEEFVSHCAGEDSATLTPAKMTVALLRSKLGALGESTRGKKAELVSRLSQTLVAAGPAAVMAIAKQEEEGKEMVATTMNVTAAESLPATP 435
            MVEGH  HRV A HR+LLLG  F A+SPNGRF++ A+ I GR L R+EA GKNLFYF++   PD  P VVHIHFGMSG ++  P        P+ RL L+N   ++   +SA     GG + Y+     LG DPLR+DAD ER+W KMQ+T K IG VLMDQS IAGIGNIYRAEILFKS LHP QP+ T+P+ TF+++W HSV  LQRGF TGSILTVD+ +AA LGPPWTRRY+YNH  CG+CG+ + +W M GRT + C TCQ L       ++   +    R ++ F S CA +D  TL P KMTVA L+ +L   G   +G KA+LV  L    V AG A   A     E G             +  P TP
Sbjct:    1 MVEGHQVHRVAAHHRKLLLGKSFVASSPNGRFSDAAR-ISGRPLTRVEAHGKNLFYFFKTPSPD--PFVVHIHFGMSGRWTELPSSSSVPALPSHRLELLNTTEDLLLRVSAQVLDAGGEEFYDRWRQKLGEDPLRDDADVERVWTKMQATKKPIGLVLMDQSVIAGIGNIYRAEILFKSRLHPNQPSHTVPRDTFDSVWRHSVECLQRGFQTGSILTVDKEDAARLGPPWTRRYVYNHSKCGKCGTGISSWEMGGRTCWACTTCQRL----HSTSSDPISTPTTRPAKVFSSRCARDDGETLRPVKMTVAQLKEQLEKRGMEAKGLKAQLVKMLEG--VWAGEAGAGAEVVVMESGAGAAKDDGKAQEEDDEPKTP 368          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: XP_001749205.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ86011.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 338.2 bits (866), Expect = 4.900e-89
Identity = 198/412 (48.06%), Postives = 243/412 (58.98%), Query Frame = 0
Query:   65 CHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEPPVVVHIHFGMSGAFSVFPL-PGKTHTPTTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQPLLAGTELAAARKQAVAVARESEEFVSHCAGE--DSATLTPAKMTVALLRSKLGALGESTRGKKAELVSRLSQTL---VAAGPAAVMAIAKQEEEGKEMVATTMNVTAAESLPATPLKVRPGTLHLAAATSAQRAAREKRRAGENRAVEHVA 471
            CHRV AAHRR LL   F  TSPNGRF EGA+ IDG+ L+RIE  GKNLFYF+          +VH+HFGMSG F+VF L      T TTRL LVN+   + A LSAMT        Y++K   LG DPLR DA    LW +++++ K+IG +LMDQ    G+GNIYRAEILFKSG+HPE PA  + +  FET+W H+VLLLQRGF  GSILTVD  EA  LG P  RRYIYN +HCGRC   VR+W +  RT Y CPTCQPL  G     A  Q +  A+    F SHCA +  +     P K+ VA LR++L  LG +  G KA LV RL+  +        AA  +        ++    + + T A          RPGT HL    SA  AAR+KR  GE ++VEHVA
Sbjct:  151 CHRVAAAHRRRLLKKRFVCTSPNGRFVEGARAIDGQPLSRIEVHGKNLFYFFGPRPEAANVAIVHVHFGMSGRFAVFDLDKAPEPTATTRLRLVNEQAGLVAHLSAMTVRLLDLAGYKAKARELGEDPLRSDAQPSVLWPRVKASRKSIGALLMDQ----GVGNIYRAEILFKSGVHPEIPAALLEEEQFETIWRHAVLLLQRGFEVGSILTVDPEEARRLGRPKMRRYIYNQKHCGRCRGPVRSWIINARTCYACPTCQPLTEGVSDTVA--QVLERAKSPTVFTSHCAPDTLEERRCQPTKLRVAELRAELERLGHAVTGTKAVLVERLTSVMHQQPKTSKAAAASKPASRRRARQKRVKSQSETKAPIAGVAAKLPRPGTAHLKQMRSAAAAARDKRAVGEKQSVEHVA 556          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: XP_005839410.1 (hypothetical protein GUITHDRAFT_157061 [Guillardia theta CCMP2712] >EKX52430.1 hypothetical protein GUITHDRAFT_157061 [Guillardia theta CCMP2712])

HSP 1 Score: 318.5 bits (815), Expect = 4.000e-83
Identity = 202/450 (44.89%), Postives = 266/450 (59.11%), Query Frame = 0
Query:   59 MVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEPPVVVHIHFGMSGAFSVFPLPGKTHTP---TTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQS---TSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQPLLAGTELAAARKQAVAVARESEEFVSHCAG---EDSATLTPAKMTVALLRSKLGALGESTRGKKAELVSRLSQTLVAAGPAAVMAIAKQEEEGKEMVATTMNVTAAESLPATPLKVRPGTLHLAAATSAQRAAREKRRAGENRAVEHVA-LH-----------ADKAGVEEEEETLDV 488
            MVEGH  HRV AAHR+ L+G VF+A+SPNGRF +GA+ IDG++  RIEAVGKNLF F+ +   +   +V+H+HFGMSG +S+F    +   P   TTRL LV++   + + LSAMT        Y  K  +LG DPLR+DAD + L+ K+ S     ++IG+++MDQSF AG GNIYRAEILF++G+HP      + +  F  +W  +V LL+RGF TGSILTVD  EA  LG P  RRYIYN + CGRCG+ V +W M GRT Y CPTCQP       A A  Q V  A  +  F+SHCA    E+  +    K+TV+ LR++L  LG ST GKK+EL++R+  +           +  +EEEG++ V                     G        SA  AAREK RAGE+RAVEHVA +H           A++A VE EEE  D+
Sbjct:    1 MVEGHSVHRVAAAHRQKLVGKVFRASSPNGRFADGARAIDGKKYHRIEAVGKNLFAFFGEDAGNF--IVLHVHFGMSGQWSIFDQNKEDVPPVTSTTRLCLVHES-GLVSHLSAMTLRCEDESYYHEKRKSLGQDPLRDDADPKELFSKVSSKRAAGRSIGEIIMDQSFFAGPGNIYRAEILFRAGVHPNTLCGDLEEEAFSRIWAETVSLLRRGFLTGSILTVDPKEAQALGRPSMRRYIYNAKDCGRCGTRVVSWDMKGRTCYACPTCQP-------APAHSQDVKFA-PARVFLSHCARESLEERESQGLEKLTVSELRNRLTQLGLSTSGKKSELIARIEGS----------GLRIKEEEGEKEVV--------------------GKGEEEEPVSALEAAREKLRAGESRAVEHVADVHPSQVAGLRGPRAEEARVEREEEEEDL 409          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: GAQ78620.1 (putative DNA glycosylase [Klebsormidium nitens])

HSP 1 Score: 316.6 bits (810), Expect = 1.500e-82
Identity = 158/278 (56.83%), Postives = 187/278 (67.27%), Query Frame = 0
Query:   59 MVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKALPDEPPVVVHIHFGMSGAFSVFPLPGKTHTPTTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWT------RRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQPLLAGTE 331
            MVEG G HRV  AH++ LLG  F+A+SPNGRF EGA  I GR LARIEA GKNLFYF+      + PVVVHIHFGMSG FS   LP      TTRL LVN++  I A LSAM C +G P+ Y+ K   LGPDPLR+DADKE +W KMQ++   IG  +MDQS IAGIGNIYRAEILF +G+HPEQP+ T+ +  FE +W  SV LL  G  TG I+T+D  E    G P        RRY+YNH  C RCGS +R+W +A RT+Y C TCQPLL   E
Sbjct:    1 MVEGPGVHRVAIAHKKALLGKKFEASSPNGRFAEGAAAITGRNLARIEAHGKNLFYFF--TADGQEPVVVHIHFGMSGRFSAHKLPSPEPRETTRLQLVNREAKIGAHLSAMFCNYGPPEFYDQKLALLGPDPLRDDADKEVVWKKMQASKSPIGTFVMDQSKIAGIGNIYRAEILFLAGIHPEQPSKTVSRDAFERMWEESVRLLHIGVQTGRIVTMDPVELGKPGTPMAALRGGDRRYVYNHASCRRCGSQIRSWVVATRTLYACETCQPLLLEVE 276          
BLAST of NO20G01870 vs. NCBI_GenBank
Match: XP_003062786.1 (formamidopyrimidine-dna glycosylase [Micromonas pusilla CCMP1545] >EEH52725.1 formamidopyrimidine-dna glycosylase [Micromonas pusilla CCMP1545])

HSP 1 Score: 307.8 bits (787), Expect = 7.000e-80
Identity = 180/383 (47.00%), Postives = 218/383 (56.92%), Query Frame = 0
Query:   59 MVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEK-------ALPDEPPVVVHIHFGMSGAFSVFPLPG-KTHTPTTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCC------------------------PTCQPLLAGTEL-------------------------AAARKQAVA--VARESEEFVSHCAGEDSATLT--PAKMTVALLRSKLGALGES 381
            MVEGHG HRV  AHRR L+G  FKA+SPNGRF +GA+ ID + LAR+EA+GKNLFYF+++               V+H+HFGMSG FSV         TPTTRL L  +     A LSAM         +E+K  ALG DPLREDA  + LW K  ++ K++G  LMDQS  AG+GNIYRAEILFK+G+HPEQP   + +  F++LW HSV LLQRG++TGSILTVD  EA +LG PWTRRY+YN   CGRCG  V  W MA RTVYCC                        P   P+L   +L                         A A+K+A A  V RE   FVSHCA +  AT    P+KMTV  LR  L A  +S
Sbjct:    1 MVEGHGVHRVAQAHRRALVGKKFKASSPNGRFVDGARAIDDKALARVEAIGKNLFYFFDRGEGGRGGGSERHGHHVMHVHFGMSGRFSVHAASDPPAATPTTRLKL--EGHGRVAMLSAMVVDLMDESGFEAKRVALGQDPLREDACADTLWEKFTASRKSVGLALMDQSMFAGVGNIYRAEILFKAGVHPEQPCRDLDRGVFDSLWRHSVELLQRGYSTGSILTVDPEEALVLGEPWTRRYVYNQSSCGRCGGKVLTWEMANRTVYCCGGSCQKLIESRSSGLCPAHLSAHPPLSIPVLGAFQLQLTPFNSTPTFARMERPSVANPSSGAGAKKRAAAKKVVREHVPFVSHCAPDSGATAASDPSKMTVKALREILAAGSDS 381          
The following BLAST results are available for this feature:
BLAST of NO20G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22053.13.400e-11968.13formamidopyrimidine-dna glycosylase [Nannochlorops... [more]
GAX84584.11.000e-11054.16hypothetical protein CEUSTIGMA_g12005.t1 [Chlamydo... [more]
XP_013904457.11.300e-10250.49endonuclease VIII [Monoraphidium neglectum] >KIZ05... [more]
XP_002502394.17.500e-9849.77DNA glycosylase [Micromonas commoda] >ACO63652.1 D... [more]
XP_011397691.17.700e-9553.85Endonuclease 8 1 [Auxenochlorella protothecoides] ... [more]
KXS17204.11.000e-9150.40H2TH-domain-containing protein [Gonapodya prolifer... [more]
XP_001749205.14.900e-8948.06hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_005839410.14.000e-8344.89hypothetical protein GUITHDRAFT_157061 [Guillardia... [more]
GAQ78620.11.500e-8256.83putative DNA glycosylase [Klebsormidium nitens][more]
XP_003062786.17.000e-8047.00formamidopyrimidine-dna glycosylase [Micromonas pu... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002727NSK002727Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01870.1NO20G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594920gene_6406Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g18gene8387Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01870.1NO20G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01870 ID=NO20G01870|Name=NO20G01870|organism=Nannochloropsis oceanica|type=gene|length=1961bp
TATGTCATAATACTTTGGTAAACGGGTCCGGGATACCCGGGTAGCCACCC
CTCTCCCGCCCTGACATACAGGTACGATCTACAAGCAAGGACGAGACAAG
CACAGAACTGAGAAGAATACAAGATGATTTATGCTCTAATATGACCCCCG
TCTGAGGAGAGGAACTCTCTTCTTACAGTATTGAGACGACGTTATTTTAC
GCTCCTACTGCTTCCTCAGCGAGCAATAGGCGATTTCAGTTGTATGCATG
ACTCAGCATCACAGCCGCACTCACAACCCCCCCGTGGTCAGCTTTAATAC
GTTCACAGGTACGGCCTGCATGAGCGCTACGGCACGTCAGTCTCAACTGC
TGCGTTTTTTGGCGTTCCTTCTCTTCTTCGCCAGGCCCCCACTTGCCACC
GCATATCGCCTTTCCCTGCAAATGGTAGAGGGCCATGGCTGTCATCGCGT
CGTCGCGGCGCACCGTCGGCTCTTGCTAGGACATGTCTTCAAGGCCACTT
CTCCCAATGGTCGCTTCACCGAGGGAGCCAAGCTAATCGACGGAAGGCGT
CTCGCACGAATCGAAGCCGTAGGTAAGAACCTATTCTATTTTTGGGAGAA
AGCCCTTCCCGACGAGCCACCTGTCGTCGTCCACATTCACTTCGGTATGT
CGGGAGCCTTTTCCGTCTTTCCACTGCCGGGAAAGACGCACACGCCAACG
ACACGCTTGAGCCTGGTCAACAAGGATATAAATATTTCAGCTTCTCTTTC
GGCAATGACTTGTGTCCATGGAGGCCCGGACCTTTACGAGAGCAAGTACA
ACGCCCTCGGACCGGACCCCCTGCGCGAGGATGCAGATAAAGAGCGGCTG
TGGCTGAAAATGCAAAGCACAAGCAAGGCCATCGGACAAGTTCTCATGGA
TCAATCGTTCATCGCCGGGATAGGGAATATATACCGCGCTGAAATCCTCT
TCAAAAGCGGCCTTCATCCGGAGCAGCCAGCCTGCACCATTCCAAAGTCT
ACTTTCGAGACGCTCTGGATGCACTCGGTCCTTCTCCTTCAGCGAGGGTT
TACCACTGGCTCAATTTTGACCGTAGATCAGGCCGAGGCTGCTCTCTTGG
GCCCCCCCTGGACTCGACGTTATATTTACAATCACAGGCATTGCGGGCGC
TGTGGAAGCGCCGTTCGAAATTGGACGATGGCAGGGAGGACAGTTTACTG
CTGTCCCACCTGCCAGCCGCTTTTGGCAGGCACTGAGCTCGCAGCTGCGC
GAAAGCAGGCCGTCGCCGTCGCACGGGAATCCGAGGAGTTCGTCTCGCAC
TGTGCGGGAGAAGACTCTGCGACCTTGACTCCGGCTAAGATGACTGTAGC
GTTGCTGCGATCGAAACTGGGGGCGCTGGGTGAGTCGACCAGGGGGAAGA
AGGCCGAGTTGGTGTCTCGTCTTTCGCAGACCTTGGTGGCTGCGGGACCG
GCGGCTGTCATGGCCATAGCCAAGCAGGAAGAGGAAGGGAAGGAGATGGT
GGCGACTACAATGAACGTGACAGCGGCAGAATCACTACCCGCCACACCGC
TGAAGGTCAGGCCAGGAACTTTGCATTTGGCTGCGGCGACGTCGGCGCAG
CGTGCGGCACGGGAAAAAAGGCGCGCAGGAGAGAATCGAGCCGTTGAGCA
TGTTGCTTTACATGCTGATAAAGCAGGAGTGGAGGAAGAGGAGGAGACCT
TGGACGTATTGGAGGAGGTTCTTATCTCTCCCTTGTCGGGTGACCATAAA
CTGAAGCGAAAAACGGCGGTGAGGAAGAGCAAGCGGCAGCGTCTGGAAAG
TGGCAAGAGAGAGTGGGCGGCCGAAGTGCCTGTGCCAGGCTCGGTGGGCA
TGATGGATGACGTACTCACCTTGGAGACTGAGAATGGAGAAACGGATGAA
ACTTCCACGTAGGCAGTTTTACAAATATAACCTAAAGTTAAATAATAGAT
GACATGTCGCA
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protein sequence of NO20G01870.1

>NO20G01870.1-protein ID=NO20G01870.1-protein|Name=NO20G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MTQHHSRTHNPPVVSFNTFTGTACMSATARQSQLLRFLAFLLFFARPPLA
TAYRLSLQMVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGR
RLARIEAVGKNLFYFWEKALPDEPPVVVHIHFGMSGAFSVFPLPGKTHTP
TTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKER
LWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPK
STFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCG
RCGSAVRNWTMAGRTVYCCPTCQPLLAGTELAAARKQAVAVARESEEFVS
HCAGEDSATLTPAKMTVALLRSKLGALGESTRGKKAELVSRLSQTLVAAG
PAAVMAIAKQEEEGKEMVATTMNVTAAESLPATPLKVRPGTLHLAAATSA
QRAAREKRRAGENRAVEHVALHADKAGVEEEEETLDVLEEVLISPLSGDH
KLKRKTAVRKSKRQRLESGKREWAAEVPVPGSVGMMDDVLTLETENGETD
ETST*
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Synonyms
Publications