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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr20 | genome | chr20:561833..563793 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO20G01870.1 vs.
Match: EWM22053.1 (formamidopyrimidine-dna glycosylase [Nannochloropsis gaditana]) HSP 1 Score: 438.3 bits (1126), Expect = 3.400e-119 Identity = 218/320 (68.12%), Postives = 245/320 (76.56%), Query Frame = 0
Query: 30 RQSQLLRFLAFLLFFARPPLATAYRLSLQMVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGRRLARIEAVGKNLFYFWEKA--LPDEPP-----------------------VVVHIHFGMSGAFSVFPLPGKTHTPTTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKERLWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPKSTFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCGRCGSAVRNWTMAGRTVYCCPTCQP 325
R +L L+ + +AY L+MVEGHGCHRVVAAHRRLLLGHVF+ATSPNGRF EGAKLIDG+RLAR+EAVGKNLFYFW A LP PP VV+H+HFGMSGAFSV P PGK TPTTRL LVNK+ N++ASLSAMTCVHGG +L+E K ALGPDPLREDADKERLW KMQ+TSKAIGQ+LMDQS +AGIGNIYRAEILFKSG+HPEQPA T+ + FETLWMHSVLLLQRGFT+GSILTVD +EA+ LGPPWTRRYIYNH HCGRCGS ++NW+MAGRT T P
Sbjct: 14 RLDSVLLVTLLLILVSSFSKTSAYSFRLRMVEGHGCHRVVAAHRRLLLGHVFQATSPNGRFLEGAKLIDGKRLARVEAVGKNLFYFWTPAAILPGTPPPPVVKRGTGKRKPIEIATSSEETVVMHVHFGMSGAFSVSPFPGKVATPTTRLFLVNKERNLTASLSAMTCVHGGLELFEGKLEALGPDPLREDADKERLWGKMQATSKAIGQILMDQSCVAGIGNIYRAEILFKSGVHPEQPANTVAHAAFETLWMHSVLLLQRGFTSGSILTVDPSEASRLGPPWTRRYIYNHSHCGRCGSRIQNWSMAGRTATQEQTAAP 333
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO20G01870.1 ID=NO20G01870.1|Name=NO20G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp
TATGTCATAATACTTTGGTAAACGGGTCCGGGATACCCGGGTAGCCACCC
CTCTCCCGCCCTGACATACAGGTACGATCTACAAGCAAGGACGAGACAAG
CACAGAACTGAGAAGAATACAAGATGATTTATGCTCTAATATGACCCCCG
TCTGAGGAGAGGAACTCTCTTCTTACAGTATTGAGACGACGTTATTTTAC
GCTCCTACTGCTTCCTCAGCGAGCAATAGGCGATTTCAGTTGTATGCATG
ACTCAGCATCACAGCCGCACTCACAACCCCCCCGTGGTCAGCTTTAATAC
GTTCACAGGTACGGCCTGCATGAGCGCTACGGCACGTCAGTCTCAACTGC
TGCGTTTTTTGGCGTTCCTTCTCTTCTTCGCCAGGCCCCCACTTGCCACC
GCATATCGCCTTTCCCTGCAAATGGTAGAGGGCCATGGCTGTCATCGCGT
CGTCGCGGCGCACCGTCGGCTCTTGCTAGGACATGTCTTCAAGGCCACTT
CTCCCAATGGTCGCTTCACCGAGGGAGCCAAGCTAATCGACGGAAGGCGT
CTCGCACGAATCGAAGCCGTAGGTAAGAACCTATTCTATTTTTGGGAGAA
AGCCCTTCCCGACGAGCCACCTGTCGTCGTCCACATTCACTTCGGTATGT
CGGGAGCCTTTTCCGTCTTTCCACTGCCGGGAAAGACGCACACGCCAACG
ACACGCTTGAGCCTGGTCAACAAGGATATAAATATTTCAGCTTCTCTTTC
GGCAATGACTTGTGTCCATGGAGGCCCGGACCTTTACGAGAGCAAGTACA
ACGCCCTCGGACCGGACCCCCTGCGCGAGGATGCAGATAAAGAGCGGCTG
TGGCTGAAAATGCAAAGCACAAGCAAGGCCATCGGACAAGTTCTCATGGA
TCAATCGTTCATCGCCGGGATAGGGAATATATACCGCGCTGAAATCCTCT
TCAAAAGCGGCCTTCATCCGGAGCAGCCAGCCTGCACCATTCCAAAGTCT
ACTTTCGAGACGCTCTGGATGCACTCGGTCCTTCTCCTTCAGCGAGGGTT
TACCACTGGCTCAATTTTGACCGTAGATCAGGCCGAGGCTGCTCTCTTGG
GCCCCCCCTGGACTCGACGTTATATTTACAATCACAGGCATTGCGGGCGC
TGTGGAAGCGCCGTTCGAAATTGGACGATGGCAGGGAGGACAGTTTACTG
CTGTCCCACCTGCCAGCCGCTTTTGGCAGGCACTGAGCTCGCAGCTGCGC
GAAAGCAGGCCGTCGCCGTCGCACGGGAATCCGAGGAGTTCGTCTCGCAC
TGTGCGGGAGAAGACTCTGCGACCTTGACTCCGGCTAAGATGACTGTAGC
GTTGCTGCGATCGAAACTGGGGGCGCTGGGTGAGTCGACCAGGGGGAAGA
AGGCCGAGTTGGTGTCTCGTCTTTCGCAGACCTTGGTGGCTGCGGGACCG
GCGGCTGTCATGGCCATAGCCAAGCAGGAAGAGGAAGGGAAGGAGATGGT
GGCGACTACAATGAACGTGACAGCGGCAGAATCACTACCCGCCACACCGC
TGAAGGTCAGGCCAGGAACTTTGCATTTGGCTGCGGCGACGTCGGCGCAG
CGTGCGGCACGGGAAAAAAGGCGCGCAGGAGAGAATCGAGCCGTTGAGCA
TGTTGCTTTACATGCTGATAAAGCAGGAGTGGAGGAAGAGGAGGAGACCT
TGGACGTATTGGAGGAGGTTCTTATCTCTCCCTTGTCGGGTGACCATAAA
CTGAAGCGAAAAACGGCGGTGAGGAAGAGCAAGCGGCAGCGTCTGGAAAG
TGGCAAGAGAGAGTGGGCGGCCGAAGTGCCTGTGCCAGGCTCGGTGGGCA
TGATGGATGACGTACTCACCTTGGAGACTGAGAATGGAGAAACGGATGAA
ACTTCCACGTAGGCAGTTTTACAAATATAACCTAAAGTTAAATAATAGAT
GACATGTCGCA back to topprotein sequence of NO20G01870.1 >NO20G01870.1-protein ID=NO20G01870.1-protein|Name=NO20G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MTQHHSRTHNPPVVSFNTFTGTACMSATARQSQLLRFLAFLLFFARPPLA
TAYRLSLQMVEGHGCHRVVAAHRRLLLGHVFKATSPNGRFTEGAKLIDGR
RLARIEAVGKNLFYFWEKALPDEPPVVVHIHFGMSGAFSVFPLPGKTHTP
TTRLSLVNKDINISASLSAMTCVHGGPDLYESKYNALGPDPLREDADKER
LWLKMQSTSKAIGQVLMDQSFIAGIGNIYRAEILFKSGLHPEQPACTIPK
STFETLWMHSVLLLQRGFTTGSILTVDQAEAALLGPPWTRRYIYNHRHCG
RCGSAVRNWTMAGRTVYCCPTCQPLLAGTELAAARKQAVAVARESEEFVS
HCAGEDSATLTPAKMTVALLRSKLGALGESTRGKKAELVSRLSQTLVAAG
PAAVMAIAKQEEEGKEMVATTMNVTAAESLPATPLKVRPGTLHLAAATSA
QRAAREKRRAGENRAVEHVALHADKAGVEEEEETLDVLEEVLISPLSGDH
KLKRKTAVRKSKRQRLESGKREWAAEVPVPGSVGMMDDVLTLETENGETD
ETST* back to topmRNA from alignment at chr20:561833..563793- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO20G01870.1 ID=NO20G01870.1|Name=NO20G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp|location=Sequence derived from alignment at chr20:561833..563793- (Nannochloropsis oceanica)
TATGTCATAATACTTTGGTAAACGGGTCCGGGATACCCGGGTAGCCACCC
CTCTCCCGCCCTGACATACAGGTACGATCTACAAGCAAGGACGAGACAAG
CACAGAACTGAGAAGAATACAAGATGATTTATGCTCTAATATGACCCCCG
TCTGAGGAGAGGAACTCTCTTCTTACAGTATTGAGACGACGTTATTTTAC
GCTCCTACTGCTTCCTCAGCGAGCAATAGGCGATTTCAGTTGTATGCATG
ACTCAGCATCACAGCCGCACTCACAACCCCCCCGTGGTCAGCTTTAATAC
GTTCACAGGTACGGCCTGCATGAGCGCTACGGCACGTCAGTCTCAACTGC
TGCGTTTTTTGGCGTTCCTTCTCTTCTTCGCCAGGCCCCCACTTGCCACC
GCATATCGCCTTTCCCTGCAAATGGTAGAGGGCCATGGCTGTCATCGCGT
CGTCGCGGCGCACCGTCGGCTCTTGCTAGGACATGTCTTCAAGGCCACTT
CTCCCAATGGTCGCTTCACCGAGGGAGCCAAGCTAATCGACGGAAGGCGT
CTCGCACGAATCGAAGCCGTAGGTAAGAACCTATTCTATTTTTGGGAGAA
AGCCCTTCCCGACGAGCCACCTGTCGTCGTCCACATTCACTTCGGTATGT
CGGGAGCCTTTTCCGTCTTTCCACTGCCGGGAAAGACGCACACGCCAACG
ACACGCTTGAGCCTGGTCAACAAGGATATAAATATTTCAGCTTCTCTTTC
GGCAATGACTTGTGTCCATGGAGGCCCGGACCTTTACGAGAGCAAGTACA
ACGCCCTCGGACCGGACCCCCTGCGCGAGGATGCAGATAAAGAGCGGCTG
TGGCTGAAAATGCAAAGCACAAGCAAGGCCATCGGACAAGTTCTCATGGA
TCAATCGTTCATCGCCGGGATAGGGAATATATACCGCGCTGAAATCCTCT
TCAAAAGCGGCCTTCATCCGGAGCAGCCAGCCTGCACCATTCCAAAGTCT
ACTTTCGAGACGCTCTGGATGCACTCGGTCCTTCTCCTTCAGCGAGGGTT
TACCACTGGCTCAATTTTGACCGTAGATCAGGCCGAGGCTGCTCTCTTGG
GCCCCCCCTGGACTCGACGTTATATTTACAATCACAGGCATTGCGGGCGC
TGTGGAAGCGCCGTTCGAAATTGGACGATGGCAGGGAGGACAGTTTACTG
CTGTCCCACCTGCCAGCCGCTTTTGGCAGGCACTGAGCTCGCAGCTGCGC
GAAAGCAGGCCGTCGCCGTCGCACGGGAATCCGAGGAGTTCGTCTCGCAC
TGTGCGGGAGAAGACTCTGCGACCTTGACTCCGGCTAAGATGACTGTAGC
GTTGCTGCGATCGAAACTGGGGGCGCTGGGTGAGTCGACCAGGGGGAAGA
AGGCCGAGTTGGTGTCTCGTCTTTCGCAGACCTTGGTGGCTGCGGGACCG
GCGGCTGTCATGGCCATAGCCAAGCAGGAAGAGGAAGGGAAGGAGATGGT
GGCGACTACAATGAACGTGACAGCGGCAGAATCACTACCCGCCACACCGC
TGAAGGTCAGGCCAGGAACTTTGCATTTGGCTGCGGCGACGTCGGCGCAG
CGTGCGGCACGGGAAAAAAGGCGCGCAGGAGAGAATCGAGCCGTTGAGCA
TGTTGCTTTACATGCTGATAAAGCAGGAGTGGAGGAAGAGGAGGAGACCT
TGGACGTATTGGAGGAGGTTCTTATCTCTCCCTTGTCGGGTGACCATAAA
CTGAAGCGAAAAACGGCGGTGAGGAAGAGCAAGCGGCAGCGTCTGGAAAG
TGGCAAGAGAGAGTGGGCGGCCGAAGTGCCTGTGCCAGGCTCGGTGGGCA
TGATGGATGACGTACTCACCTTGGAGACTGAGAATGGAGAAACGGATGAA
ACTTCCACGTAGGCAGTTTTACAAATATAACCTAAAGTTAAATAATAGAT
GACATGTCGCA back to topCoding sequence (CDS) from alignment at chr20:561833..563793- >NO20G01870.1 ID=NO20G01870.1|Name=NO20G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at chr20:561833..563793- (Nannochloropsis oceanica)
ATGACTCAGCATCACAGCCGCACTCACAACCCCCCCGTGGTCAGCTTTAA
TACGTTCACAGGTACGGCCTGCATGAGCGCTACGGCACGTCAGTCTCAAC
TGCTGCGTTTTTTGGCGTTCCTTCTCTTCTTCGCCAGGCCCCCACTTGCC
ACCGCATATCGCCTTTCCCTGCAAATGGTAGAGGGCCATGGCTGTCATCG
CGTCGTCGCGGCGCACCGTCGGCTCTTGCTAGGACATGTCTTCAAGGCCA
CTTCTCCCAATGGTCGCTTCACCGAGGGAGCCAAGCTAATCGACGGAAGG
CGTCTCGCACGAATCGAAGCCGTAGGTAAGAACCTATTCTATTTTTGGGA
GAAAGCCCTTCCCGACGAGCCACCTGTCGTCGTCCACATTCACTTCGGTA
TGTCGGGAGCCTTTTCCGTCTTTCCACTGCCGGGAAAGACGCACACGCCA
ACGACACGCTTGAGCCTGGTCAACAAGGATATAAATATTTCAGCTTCTCT
TTCGGCAATGACTTGTGTCCATGGAGGCCCGGACCTTTACGAGAGCAAGT
ACAACGCCCTCGGACCGGACCCCCTGCGCGAGGATGCAGATAAAGAGCGG
CTGTGGCTGAAAATGCAAAGCACAAGCAAGGCCATCGGACAAGTTCTCAT
GGATCAATCGTTCATCGCCGGGATAGGGAATATATACCGCGCTGAAATCC
TCTTCAAAAGCGGCCTTCATCCGGAGCAGCCAGCCTGCACCATTCCAAAG
TCTACTTTCGAGACGCTCTGGATGCACTCGGTCCTTCTCCTTCAGCGAGG
GTTTACCACTGGCTCAATTTTGACCGTAGATCAGGCCGAGGCTGCTCTCT
TGGGCCCCCCCTGGACTCGACGTTATATTTACAATCACAGGCATTGCGGG
CGCTGTGGAAGCGCCGTTCGAAATTGGACGATGGCAGGGAGGACAGTTTA
CTGCTGTCCCACCTGCCAGCCGCTTTTGGCAGGCACTGAGCTCGCAGCTG
CGCGAAAGCAGGCCGTCGCCGTCGCACGGGAATCCGAGGAGTTCGTCTCG
CACTGTGCGGGAGAAGACTCTGCGACCTTGACTCCGGCTAAGATGACTGT
AGCGTTGCTGCGATCGAAACTGGGGGCGCTGGGTGAGTCGACCAGGGGGA
AGAAGGCCGAGTTGGTGTCTCGTCTTTCGCAGACCTTGGTGGCTGCGGGA
CCGGCGGCTGTCATGGCCATAGCCAAGCAGGAAGAGGAAGGGAAGGAGAT
GGTGGCGACTACAATGAACGTGACAGCGGCAGAATCACTACCCGCCACAC
CGCTGAAGGTCAGGCCAGGAACTTTGCATTTGGCTGCGGCGACGTCGGCG
CAGCGTGCGGCACGGGAAAAAAGGCGCGCAGGAGAGAATCGAGCCGTTGA
GCATGTTGCTTTACATGCTGATAAAGCAGGAGTGGAGGAAGAGGAGGAGA
CCTTGGACGTATTGGAGGAGGTTCTTATCTCTCCCTTGTCGGGTGACCAT
AAACTGAAGCGAAAAACGGCGGTGAGGAAGAGCAAGCGGCAGCGTCTGGA
AAGTGGCAAGAGAGAGTGGGCGGCCGAAGTGCCTGTGCCAGGCTCGGTGG
GCATGATGGATGACGTACTCACCTTGGAGACTGAGAATGGAGAAACGGAT
GAAACTTCCACGTAG back to top
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